RNA–Protein interactions for RNA: ENST00000429456.1

LINC01238-203, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 2,170 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-203ENST00000429456 IGHV6-1A0A0B4J1U7 121 aa6.85□□□□□ -1.31
LINC01238-203ENST00000429456 A8MUN3 132 aa6.85□□□□□ -1.31
LINC01238-203ENST00000429456 Q8N9P0 234 aaPredicted RBP6.85□□□□□ -1.31
LINC01238-203ENST00000429456 FRAS1Q86XX4 4008 aa6.84□□□□□ -1.31
LINC01238-203ENST00000429456 A8MU10 97 aa6.84□□□□□ -1.32
LINC01238-203ENST00000429456 CDK2AP2O75956 126 aa6.84□□□□□ -1.32
LINC01238-203ENST00000429456 DNAH2Q9P225 4427 aa6.83□□□□□ -1.32
LINC01238-203ENST00000429456 PCOTHQ58A44 107 aa6.83□□□□□ -1.32
LINC01238-203ENST00000429456 COA5Q86WW8 74 aa6.83□□□□□ -1.32
LINC01238-203ENST00000429456 MRPL34Q9BQ48 92 aaKnown RBP6.83□□□□□ -1.32
LINC01238-203ENST00000429456 Q5VV11 94 aa6.82□□□□□ -1.32
LINC01238-203ENST00000429456 LIMD2Q9BT23 127 aa6.82□□□□□ -1.32
LINC01238-203ENST00000429456 A0A087X002 238 aa6.81□□□□□ -1.32
LINC01238-203ENST00000429456 NOTCH2NLQ7Z3S9 236 aa6.81□□□□□ -1.32
LINC01238-203ENST00000429456 KMT2AQ03164 3969 aa6.81□□□□□ -1.32
LINC01238-203ENST00000429456 IGLV7-43P04211 117 aa6.78□□□□□ -1.32
LINC01238-203ENST00000429456 LCA10Q71F78 164 aa6.78□□□□□ -1.32
LINC01238-203ENST00000429456 A6NN06 94 aa6.76□□□□□ -1.33
LINC01238-203ENST00000429456 PRR15LQ9BU68 103 aa6.76□□□□□ -1.33
LINC01238-203ENST00000429456 DNHD1Q96M86 4753 aa6.76□□□□□ -1.33
LINC01238-203ENST00000429456 C1orf134Q5TEV5 83 aa6.76□□□□□ -1.33
LINC01238-203ENST00000429456 LOC101927531A0A1B0GV80 90 aa6.75□□□□□ -1.33
LINC01238-203ENST00000429456 CHKB-CPT1BH3BT56 60 aa6.74□□□□□ -1.33
LINC01238-203ENST00000429456 SPINK6Q6UWN8 80 aa6.74□□□□□ -1.33
LINC01238-203ENST00000429456 C7orf65Q6ZTY9 151 aa6.74□□□□□ -1.33
LINC01238-203ENST00000429456 ALMS1Q8TCU4 4167 aa6.73□□□□□ -1.33
LINC01238-203ENST00000429456 KRTAP13-3Q3SY46 172 aa6.73□□□□□ -1.33
LINC01238-203ENST00000429456 Q75L30 129 aa6.73□□□□□ -1.33
LINC01238-203ENST00000429456 CIRBP-AS1Q8TBR5 109 aa6.73□□□□□ -1.33
LINC01238-203ENST00000429456 DNAH11Q96DT5 4516 aa6.72□□□□□ -1.33
LINC01238-203ENST00000429456 HRES1P13985 223 aa6.72□□□□□ -1.33
LINC01238-203ENST00000429456 Q5W150 140 aa6.72□□□□□ -1.33
LINC01238-203ENST00000429456 SSBP3-AS1Q7Z2R9 100 aa6.72□□□□□ -1.33
LINC01238-203ENST00000429456 FAM229AH3BQW9 127 aa6.71□□□□□ -1.33
LINC01238-203ENST00000429456 ATP11AUNQ6ZP68 121 aa6.71□□□□□ -1.33
LINC01238-203ENST00000429456 A0A0A0MQY5 61 aa6.71□□□□□ -1.34
LINC01238-203ENST00000429456 LINC01558Q9Y6Z2 57 aa6.71□□□□□ -1.34
LINC01238-203ENST00000429456 DNAH5Q8TE73 4624 aa6.7□□□□□ -1.34
LINC01238-203ENST00000429456 DNAH6Q9C0G6 4158 aa6.7□□□□□ -1.34
LINC01238-203ENST00000429456 LCE2BO14633 110 aa6.69□□□□□ -1.34
LINC01238-203ENST00000429456 FBN3Q75N90 2809 aa6.69□□□□□ -1.34
LINC01238-203ENST00000429456 LINC00313P59037 77 aa6.68□□□□□ -1.34
LINC01238-203ENST00000429456 SPTSSBQ8NFR3 76 aa6.68□□□□□ -1.34
LINC01238-203ENST00000429456 SPAG11AQ6PDA7 123 aa6.68□□□□□ -1.34
LINC01238-203ENST00000429456 MEGF8Q7Z7M0 2845 aa6.68□□□□□ -1.34
LINC01238-203ENST00000429456 LY6G6CO95867 125 aa6.66□□□□□ -1.34
LINC01238-203ENST00000429456 KRTAP10-2P60368 255 aa6.65□□□□□ -1.34
LINC01238-203ENST00000429456 A6NED7 52 aa6.64□□□□□ -1.35
LINC01238-203ENST00000429456 TGP01266 2768 aa6.63□□□□□ -1.35
LINC01238-203ENST00000429456 KRTAP13-2Q52LG2 175 aa6.62□□□□□ -1.35
LINC01238-203ENST00000429456 LINC01554Q52M75 96 aa6.62□□□□□ -1.35
LINC01238-203ENST00000429456 CDC42SE1Q9NRR8 79 aa6.6□□□□□ -1.35
LINC01238-203ENST00000429456 ACYP2P14621 99 aa6.59□□□□□ -1.35
LINC01238-203ENST00000429456 Q6ZSA8 131 aa6.59□□□□□ -1.35
LINC01238-203ENST00000429456 KRTAP10-1P60331 282 aa6.58□□□□□ -1.36
LINC01238-203ENST00000429456 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
LINC01238-203ENST00000429456 LRP1BQ9NZR2 4599 aa6.57□□□□□ -1.36
LINC01238-203ENST00000429456 KRTAP16-1A8MUX0 517 aa6.57□□□□□ -1.36
LINC01238-203ENST00000429456 IGKV2-30P06310 120 aa6.56□□□□□ -1.36
LINC01238-203ENST00000429456 SPINK7P58062 85 aa6.56□□□□□ -1.36
LINC01238-203ENST00000429456 RETNLBQ9BQ08 111 aa6.55□□□□□ -1.36
LINC01238-203ENST00000429456 KRTAP1-4P0C5Y4 121 aa6.55□□□□□ -1.36
LINC01238-203ENST00000429456 PKD1P98161 4303 aa6.55□□□□□ -1.36
LINC01238-203ENST00000429456 FAT2Q9NYQ8 4349 aa6.53□□□□□ -1.36
LINC01238-203ENST00000429456 LCE2CQ5TA81 110 aa6.51□□□□□ -1.37
LINC01238-203ENST00000429456 PRAC1Q96KF2 57 aa6.51□□□□□ -1.37
LINC01238-203ENST00000429456 VPS13BQ7Z7G8 4022 aa6.49□□□□□ -1.37
LINC01238-203ENST00000429456 HYDINQ4G0P3 5121 aa6.48□□□□□ -1.37
LINC01238-203ENST00000429456 KRTAP21-3Q3LHN1 58 aa6.48□□□□□ -1.37
LINC01238-203ENST00000429456 PLA2G1BP04054 148 aaKnown RBP6.45□□□□□ -1.38
LINC01238-203ENST00000429456 TYMSOSQ8TAI1 123 aa6.45□□□□□ -1.38
LINC01238-203ENST00000429456 IGKV2D-30A0A075B6S6 120 aa6.44□□□□□ -1.38
LINC01238-203ENST00000429456 SPINK1P00995 79 aa6.44□□□□□ -1.38
LINC01238-203ENST00000429456 A0A1B0GU69 56 aa6.42□□□□□ -1.38
LINC01238-203ENST00000429456 ADM2Q7Z4H4 148 aa6.42□□□□□ -1.38
LINC01238-203ENST00000429456 SACSQ9NZJ4 4579 aa6.41□□□□□ -1.38
LINC01238-203ENST00000429456 LCE2AQ5TA79 106 aaPredicted RBP6.41□□□□□ -1.38
LINC01238-203ENST00000429456 RPS29P62273 56 aaKnown RBP6.37□□□□□ -1.39
LINC01238-203ENST00000429456 SPATA8Q6RVD6 105 aa6.36□□□□□ -1.39
LINC01238-203ENST00000429456 LINC00304Q8N9R0 145 aa6.36□□□□□ -1.39
LINC01238-203ENST00000429456 UQCR11O14957 56 aa6.31□□□□□ -1.4
LINC01238-203ENST00000429456 MIR22HGQ0VDD5 57 aa6.31□□□□□ -1.4
LINC01238-203ENST00000429456 Q8N1X5 172 aa6.3□□□□□ -1.4
LINC01238-203ENST00000429456 PKHD1P08F94 4074 aa6.29□□□□□ -1.4
LINC01238-203ENST00000429456 PKHD1L1Q86WI1 4243 aa6.29□□□□□ -1.4
LINC01238-203ENST00000429456 DYNC1H1Q14204 4646 aaKnown RBP6.28□□□□□ -1.4
LINC01238-203ENST00000429456 LORP23490 312 aaPredicted RBP6.27□□□□□ -1.41
LINC01238-203ENST00000429456 A8MUU9 505 aa6.25□□□□□ -1.41
LINC01238-203ENST00000429456 SMR3BP02814 79 aaPredicted RBP6.25□□□□□ -1.41
LINC01238-203ENST00000429456 C20orf166-AS1Q96NR2 134 aa6.25□□□□□ -1.41
LINC01238-203ENST00000429456 APOBP04114 4563 aaKnown RBP6.24□□□□□ -1.41
LINC01238-203ENST00000429456 C9orf92A6NGG3 77 aa6.23□□□□□ -1.41
LINC01238-203ENST00000429456 KRTAP10-4P60372 401 aaPredicted RBP6.22□□□□□ -1.41
LINC01238-203ENST00000429456 FAT1Q14517 4588 aa6.2□□□□□ -1.42
LINC01238-203ENST00000429456 A0A1B0GVY2 172 aa6.2□□□□□ -1.42
LINC01238-203ENST00000429456 CSAG1Q6PB30 78 aa6.2□□□□□ -1.42
LINC01238-203ENST00000429456 KRTAP3-1Q9BYR8 98 aa6.18□□□□□ -1.42
LINC01238-203ENST00000429456 ROMO1P60602 79 aa6.18□□□□□ -1.42
LINC01238-203ENST00000429456 H0YAA0 97 aa6.1□□□□□ -1.43
LINC01238-203ENST00000429456 SEC61BP60468 96 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms