RNA–Protein interactions for RNA: ENST00000427516.2

VTI1BP4-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 4, humanhuman

BASIC

Gene VTI1BP4, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP4-201ENST00000427516 KRTAP10-9P60411 292 aa3.11□□□□□ -1.91
VTI1BP4-201ENST00000427516 FN1P02751 2386 aaKnown RBP3.11□□□□□ -1.91
VTI1BP4-201ENST00000427516 APCP25054 2843 aa3.11□□□□□ -1.91
VTI1BP4-201ENST00000427516 RPS29P62273 56 aaKnown RBP3.1□□□□□ -1.91
VTI1BP4-201ENST00000427516 ZFHX2Q9C0A1 2572 aaPredicted RBP3.1□□□□□ -1.91
VTI1BP4-201ENST00000427516 NBDYA0A0U1RRE5 68 aa3.09□□□□□ -1.91
VTI1BP4-201ENST00000427516 KRTAP10-11P60412 298 aa3.09□□□□□ -1.91
VTI1BP4-201ENST00000427516 CAMK2N1Q7Z7J9 78 aa3.09□□□□□ -1.91
VTI1BP4-201ENST00000427516 MXRA5Q9NR99 2828 aa3.08□□□□□ -1.92
VTI1BP4-201ENST00000427516 TYMSOSQ8TAI1 123 aa3.08□□□□□ -1.92
VTI1BP4-201ENST00000427516 HIVEP2P31629 2446 aa3.07□□□□□ -1.92
VTI1BP4-201ENST00000427516 KRTAP24-1Q3LI83 254 aa3.06□□□□□ -1.92
VTI1BP4-201ENST00000427516 NAV2Q8IVL1 2488 aa3.06□□□□□ -1.92
VTI1BP4-201ENST00000427516 USP9XQ93008 2570 aaPredicted RBP3.06□□□□□ -1.92
VTI1BP4-201ENST00000427516 ZFYVE26Q68DK2 2539 aa3.05□□□□□ -1.92
VTI1BP4-201ENST00000427516 PTPN13Q12923 2485 aa3.05□□□□□ -1.92
VTI1BP4-201ENST00000427516 TEX15Q9BXT5 2789 aa3.05□□□□□ -1.92
VTI1BP4-201ENST00000427516 EPG5Q9HCE0 2579 aa3.05□□□□□ -1.92
VTI1BP4-201ENST00000427516 USP9YO00507 2555 aaPredicted RBP3.05□□□□□ -1.92
VTI1BP4-201ENST00000427516 NBEAL2Q6ZNJ1 2754 aa3.04□□□□□ -1.92
VTI1BP4-201ENST00000427516 KRTAP1-5Q9BYS1 174 aa3.04□□□□□ -1.92
VTI1BP4-201ENST00000427516 RELNP78509 3460 aa3.04□□□□□ -1.92
VTI1BP4-201ENST00000427516 CHD8Q9HCK8 2581 aa3.03□□□□□ -1.92
VTI1BP4-201ENST00000427516 TPRXLQ17RH7 258 aa3.03□□□□□ -1.92
VTI1BP4-201ENST00000427516 APLNQ9ULZ1 77 aa3.03□□□□□ -1.92
VTI1BP4-201ENST00000427516 LRRK2Q5S007 2527 aa3.03□□□□□ -1.92
VTI1BP4-201ENST00000427516 ACACBO00763 2458 aa3.03□□□□□ -1.92
VTI1BP4-201ENST00000427516 LAMA5O15230 3695 aa3.02□□□□□ -1.93
VTI1BP4-201ENST00000427516 SVEP1Q4LDE5 3571 aa3.02□□□□□ -1.93
VTI1BP4-201ENST00000427516 IGF2RP11717 2491 aa3.02□□□□□ -1.93
VTI1BP4-201ENST00000427516 NF1P21359 2839 aa3.01□□□□□ -1.93
VTI1BP4-201ENST00000427516 Q6ZRN7 208 aaPredicted RBP3.01□□□□□ -1.93
VTI1BP4-201ENST00000427516 OTOGQ6ZRI0 2925 aa3□□□□□ -1.93
VTI1BP4-201ENST00000427516 LCE1AQ5T7P2 110 aa3□□□□□ -1.93
VTI1BP4-201ENST00000427516 CACNA1AO00555 2505 aa3□□□□□ -1.93
VTI1BP4-201ENST00000427516 UNC79Q9P2D8 2635 aa3□□□□□ -1.93
VTI1BP4-201ENST00000427516 AKAP9Q99996 3911 aa3□□□□□ -1.93
VTI1BP4-201ENST00000427516 NBPF19A0A087WUL8 3843 aa2.99□□□□□ -1.93
VTI1BP4-201ENST00000427516 MTORP42345 2549 aa2.98□□□□□ -1.93
VTI1BP4-201ENST00000427516 PLAC4Q8WY50 150 aa2.98□□□□□ -1.93
VTI1BP4-201ENST00000427516 S4R3F8 94 aa2.98□□□□□ -1.93
VTI1BP4-201ENST00000427516 F8P00451 2351 aa2.97□□□□□ -1.93
VTI1BP4-201ENST00000427516 CFAP46Q8IYW2 2715 aa2.97□□□□□ -1.93
VTI1BP4-201ENST00000427516 ZANQ9Y493 2812 aa2.97□□□□□ -1.93
VTI1BP4-201ENST00000427516 ITPR3Q14573 2671 aa2.96□□□□□ -1.93
VTI1BP4-201ENST00000427516 M0QZ58 72 aa2.96□□□□□ -1.94
VTI1BP4-201ENST00000427516 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
VTI1BP4-201ENST00000427516 HIVEP1P15822 2718 aa2.95□□□□□ -1.94
VTI1BP4-201ENST00000427516 SONP18583 2426 aaKnown RBP2.95□□□□□ -1.94
VTI1BP4-201ENST00000427516 FASNP49327 2511 aaKnown RBP2.95□□□□□ -1.94
VTI1BP4-201ENST00000427516 CENPEQ02224 2701 aa2.95□□□□□ -1.94
VTI1BP4-201ENST00000427516 FAM208BQ5VWN6 2430 aa2.94□□□□□ -1.94
VTI1BP4-201ENST00000427516 A0A0D9SG42 100 aa2.94□□□□□ -1.94
VTI1BP4-201ENST00000427516 KRTAP13-2Q52LG2 175 aa2.94□□□□□ -1.94
VTI1BP4-201ENST00000427516 USP24Q9UPU5 2620 aa2.94□□□□□ -1.94
VTI1BP4-201ENST00000427516 VPS13CQ709C8 3753 aa2.94□□□□□ -1.94
VTI1BP4-201ENST00000427516 ZNF462Q96JM2 2506 aa2.93□□□□□ -1.94
VTI1BP4-201ENST00000427516 NIPBLQ6KC79 2804 aaeCLIP2.93□□□□□ -1.94
VTI1BP4-201ENST00000427516 PKD1L2Q7Z442 2459 aa2.93□□□□□ -1.94
VTI1BP4-201ENST00000427516 FBN2P35556 2912 aa2.93□□□□□ -1.94
VTI1BP4-201ENST00000427516 BAHCC1Q9P281 2608 aa2.92□□□□□ -1.94
VTI1BP4-201ENST00000427516 C10orf95Q9H7T3 257 aa2.92□□□□□ -1.94
VTI1BP4-201ENST00000427516 FLNAP21333 2647 aaKnown RBP2.92□□□□□ -1.94
VTI1BP4-201ENST00000427516 HECTD1Q9ULT8 2610 aa2.91□□□□□ -1.94
VTI1BP4-201ENST00000427516 ABCA12Q86UK0 2595 aa2.91□□□□□ -1.94
VTI1BP4-201ENST00000427516 UBR5O95071 2799 aaPredicted RBP2.9□□□□□ -1.94
VTI1BP4-201ENST00000427516 TENM4Q6N022 2769 aa2.9□□□□□ -1.94
VTI1BP4-201ENST00000427516 MYO18BQ8IUG5 2567 aa2.9□□□□□ -1.94
VTI1BP4-201ENST00000427516 SMR3AQ99954 134 aa2.9□□□□□ -1.95
VTI1BP4-201ENST00000427516 CSMD2Q7Z408 3487 aa2.9□□□□□ -1.95
VTI1BP4-201ENST00000427516 ANK3Q12955 4377 aaKnown RBP2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 SETD2Q9BYW2 2564 aaPredicted RBP2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 J3QKU1 62 aa2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 KRTAP10-6P60371 365 aaPredicted RBP2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 DNAH1Q9P2D7 4330 aa2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 POLQO75417 2590 aa2.89□□□□□ -1.95
VTI1BP4-201ENST00000427516 NOTCH2Q04721 2471 aa2.88□□□□□ -1.95
VTI1BP4-201ENST00000427516 HELZ2Q9BYK8 2649 aaKnown RBP2.87□□□□□ -1.95
VTI1BP4-201ENST00000427516 KRTAP1-4P0C5Y4 121 aa2.87□□□□□ -1.95
VTI1BP4-201ENST00000427516 CCDC168Q8NDH2 2452 aa2.87□□□□□ -1.95
VTI1BP4-201ENST00000427516 FLNCQ14315 2725 aa2.86□□□□□ -1.95
VTI1BP4-201ENST00000427516 SRRM2Q9UQ35 2752 aaKnown RBP2.86□□□□□ -1.95
VTI1BP4-201ENST00000427516 KRTAP12-1P59990 96 aa2.85□□□□□ -1.95
VTI1BP4-201ENST00000427516 FLNBO75369 2602 aaKnown RBP2.85□□□□□ -1.95
VTI1BP4-201ENST00000427516 IGSF10Q6WRI0 2623 aa2.85□□□□□ -1.95
VTI1BP4-201ENST00000427516 VWFP04275 2813 aa2.84□□□□□ -1.95
VTI1BP4-201ENST00000427516 KRTAP12-2P59991 146 aa2.84□□□□□ -1.95
VTI1BP4-201ENST00000427516 KRTAP13-4Q3LI77 160 aa2.84□□□□□ -1.95
VTI1BP4-201ENST00000427516 PRO2289Q9P1D8 64 aa2.84□□□□□ -1.95
VTI1BP4-201ENST00000427516 FLG2Q5D862 2391 aaPredicted RBP2.81□□□□□ -1.96
VTI1BP4-201ENST00000427516 C9orf92A6NGG3 77 aa2.81□□□□□ -1.96
VTI1BP4-201ENST00000427516 INE1O15225 51 aa2.81□□□□□ -1.96
VTI1BP4-201ENST00000427516 MEGF8Q7Z7M0 2845 aa2.8□□□□□ -1.96
VTI1BP4-201ENST00000427516 MAST4O15021 2626 aa2.8□□□□□ -1.96
VTI1BP4-201ENST00000427516 TEP1Q99973 2627 aaKnown RBP2.8□□□□□ -1.96
VTI1BP4-201ENST00000427516 ZNF469Q96JG9 3925 aaPredicted RBP2.8□□□□□ -1.96
VTI1BP4-201ENST00000427516 KRTAP2-2Q9BYT5 123 aa2.79□□□□□ -1.96
VTI1BP4-201ENST00000427516 TGP01266 2768 aa2.79□□□□□ -1.96
VTI1BP4-201ENST00000427516 ACANP16112 2415 aa2.78□□□□□ -1.96
VTI1BP4-201ENST00000427516 PDZD2O15018 2839 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms