RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 NOTCH2NLQ7Z3S9 236 aa12.56□□□□□ -0.4
CNEP1R1-202ENST00000427478 KRTAP10-4P60372 401 aaPredicted RBP12.53□□□□□ -0.4
CNEP1R1-202ENST00000427478 Q5XG85 94 aa12.53□□□□□ -0.4
CNEP1R1-202ENST00000427478 PRR26Q8N8Z3 221 aa12.52□□□□□ -0.41
CNEP1R1-202ENST00000427478 ZCCHC13Q8WW36 166 aaKnown RBP12.51□□□□□ -0.41
CNEP1R1-202ENST00000427478 MP68P56378 58 aa12.5□□□□□ -0.41
CNEP1R1-202ENST00000427478 C4orf48Q5BLP8 95 aa12.5□□□□□ -0.41
CNEP1R1-202ENST00000427478 C1orf195Q5TG92 126 aa12.5□□□□□ -0.41
CNEP1R1-202ENST00000427478 LIMD2Q9BT23 127 aa12.5□□□□□ -0.41
CNEP1R1-202ENST00000427478 H0Y9P7 68 aa12.49□□□□□ -0.41
CNEP1R1-202ENST00000427478 MRPL34Q9BQ48 92 aaKnown RBP12.49□□□□□ -0.41
CNEP1R1-202ENST00000427478 NDUFS5O43920 106 aa12.47□□□□□ -0.41
CNEP1R1-202ENST00000427478 FAT1Q14517 4588 aa12.47□□□□□ -0.41
CNEP1R1-202ENST00000427478 LINC00208Q96KT6 92 aa12.46□□□□□ -0.42
CNEP1R1-202ENST00000427478 SPINK1P00995 79 aa12.44□□□□□ -0.42
CNEP1R1-202ENST00000427478 TP53AIP1Q9HCN2 124 aa12.43□□□□□ -0.42
CNEP1R1-202ENST00000427478 TRAV22A0A0B4J277 110 aa12.43□□□□□ -0.42
CNEP1R1-202ENST00000427478 LINC00304Q8N9R0 145 aa12.42□□□□□ -0.42
CNEP1R1-202ENST00000427478 C8orf87E5RJ46 101 aa12.41□□□□□ -0.42
CNEP1R1-202ENST00000427478 RPS28P62857 69 aaKnown RBP12.4□□□□□ -0.42
CNEP1R1-202ENST00000427478 RYR3Q15413 4870 aa12.4□□□□□ -0.42
CNEP1R1-202ENST00000427478 H3BPC8 53 aa12.38□□□□□ -0.43
CNEP1R1-202ENST00000427478 ATP5EP56381 51 aaPredicted RBP12.38□□□□□ -0.43
CNEP1R1-202ENST00000427478 OXTP01178 125 aa12.37□□□□□ -0.43
CNEP1R1-202ENST00000427478 C1orf64Q8NEQ6 169 aa12.37□□□□□ -0.43
CNEP1R1-202ENST00000427478 LINC00313P59037 77 aa12.36□□□□□ -0.43
CNEP1R1-202ENST00000427478 SPAG11AQ6PDA7 123 aa12.33□□□□□ -0.44
CNEP1R1-202ENST00000427478 SERP1Q9Y6X1 66 aa12.32□□□□□ -0.44
CNEP1R1-202ENST00000427478 FAM229AH3BQW9 127 aa12.32□□□□□ -0.44
CNEP1R1-202ENST00000427478 RPS29P62273 56 aaKnown RBP12.31□□□□□ -0.44
CNEP1R1-202ENST00000427478 Q5VSD8 79 aa12.25□□□□□ -0.45
CNEP1R1-202ENST00000427478 PRR4Q16378 134 aa12.24□□□□□ -0.45
CNEP1R1-202ENST00000427478 KRTAP16-1A8MUX0 517 aa12.23□□□□□ -0.45
CNEP1R1-202ENST00000427478 Q5W150 140 aa12.23□□□□□ -0.45
CNEP1R1-202ENST00000427478 Q8N9P0 234 aaPredicted RBP12.22□□□□□ -0.45
CNEP1R1-202ENST00000427478 PKHD1L1Q86WI1 4243 aa12.21□□□□□ -0.45
CNEP1R1-202ENST00000427478 HSPG2P98160 4391 aa12.21□□□□□ -0.46
CNEP1R1-202ENST00000427478 KRTAP13-3Q3SY46 172 aa12.19□□□□□ -0.46
CNEP1R1-202ENST00000427478 PCOTHQ58A44 107 aa12.19□□□□□ -0.46
CNEP1R1-202ENST00000427478 SPANXA2-OT1Q8N9U9 137 aa12.15□□□□□ -0.46
CNEP1R1-202ENST00000427478 CYP4F30PQ9H0H9 118 aa12.15□□□□□ -0.46
CNEP1R1-202ENST00000427478 RETNLBQ9BQ08 111 aa12.14□□□□□ -0.47
CNEP1R1-202ENST00000427478 LOC101927531A0A1B0GV80 90 aa12.11□□□□□ -0.47
CNEP1R1-202ENST00000427478 KRTAP17-1Q9BYP8 105 aa12.11□□□□□ -0.47
CNEP1R1-202ENST00000427478 RYR1P21817 5038 aa12.1□□□□□ -0.47
CNEP1R1-202ENST00000427478 Q8N1X5 172 aa12.05□□□□□ -0.48
CNEP1R1-202ENST00000427478 IGLV7-46A0A075B6I9 117 aa12.05□□□□□ -0.48
CNEP1R1-202ENST00000427478 SMIM26A0A096LP01 95 aa12.04□□□□□ -0.48
CNEP1R1-202ENST00000427478 KRTAP10-8P60410 259 aa12.03□□□□□ -0.48
CNEP1R1-202ENST00000427478 LRP1Q07954 4544 aaKnown RBP12.02□□□□□ -0.48
CNEP1R1-202ENST00000427478 C9orf92A6NGG3 77 aa12.01□□□□□ -0.49
CNEP1R1-202ENST00000427478 FP248Q71RG6 208 aaPredicted RBP12□□□□□ -0.49
CNEP1R1-202ENST00000427478 FLG2Q5D862 2391 aaPredicted RBP11.98□□□□□ -0.49
CNEP1R1-202ENST00000427478 KIAA1109Q2LD37 5005 aa11.98□□□□□ -0.49
CNEP1R1-202ENST00000427478 TNXBP22105 4242 aa11.97□□□□□ -0.49
CNEP1R1-202ENST00000427478 IGKV2-30P06310 120 aa11.96□□□□□ -0.49
CNEP1R1-202ENST00000427478 EPPK1P58107 5090 aaKnown RBP11.95□□□□□ -0.5
CNEP1R1-202ENST00000427478 C4orf26Q17RF5 130 aa11.92□□□□□ -0.5
CNEP1R1-202ENST00000427478 IGKV2D-30A0A075B6S6 120 aa11.9□□□□□ -0.5
CNEP1R1-202ENST00000427478 MPLKIPQ8TAP9 179 aa11.89□□□□□ -0.51
CNEP1R1-202ENST00000427478 FAT3Q8TDW7 4589 aa11.89□□□□□ -0.51
CNEP1R1-202ENST00000427478 HRES1P13985 223 aa11.88□□□□□ -0.51
CNEP1R1-202ENST00000427478 COA5Q86WW8 74 aa11.87□□□□□ -0.51
CNEP1R1-202ENST00000427478 C20orf166-AS1Q96NR2 134 aa11.87□□□□□ -0.51
CNEP1R1-202ENST00000427478 A8MUU9 505 aa11.86□□□□□ -0.51
CNEP1R1-202ENST00000427478 MT1HL1P0DM35 61 aa11.81□□□□□ -0.52
CNEP1R1-202ENST00000427478 C7orf65Q6ZTY9 151 aa11.76□□□□□ -0.53
CNEP1R1-202ENST00000427478 MYCBP2O75592 4640 aa11.75□□□□□ -0.53
CNEP1R1-202ENST00000427478 DMAC1Q96GE9 116 aa11.74□□□□□ -0.53
CNEP1R1-202ENST00000427478 Q1T7F1 81 aa11.72□□□□□ -0.53
CNEP1R1-202ENST00000427478 DMBT1Q9UGM3 2413 aaPredicted RBP11.71□□□□□ -0.54
CNEP1R1-202ENST00000427478 ACYP2P14621 99 aa11.71□□□□□ -0.54
CNEP1R1-202ENST00000427478 Q75L30 129 aa11.7□□□□□ -0.54
CNEP1R1-202ENST00000427478 KRTAP4-5Q9BYR2 181 aa11.68□□□□□ -0.54
CNEP1R1-202ENST00000427478 V9GYY9 64 aa11.62□□□□□ -0.55
CNEP1R1-202ENST00000427478 PSPHP1O15172 72 aa11.6□□□□□ -0.55
CNEP1R1-202ENST00000427478 CHKB-CPT1BH3BT56 60 aa11.57□□□□□ -0.56
CNEP1R1-202ENST00000427478 SPINK7P58062 85 aa11.57□□□□□ -0.56
CNEP1R1-202ENST00000427478 XP32Q5T750 250 aa11.57□□□□□ -0.56
CNEP1R1-202ENST00000427478 A8MUN3 132 aa11.54□□□□□ -0.56
CNEP1R1-202ENST00000427478 RPL37P61927 97 aaKnown RBP11.54□□□□□ -0.56
CNEP1R1-202ENST00000427478 ATP11AUNQ6ZP68 121 aa11.54□□□□□ -0.56
CNEP1R1-202ENST00000427478 PRR15LQ9BU68 103 aa11.5□□□□□ -0.57
CNEP1R1-202ENST00000427478 LINC01558Q9Y6Z2 57 aa11.46□□□□□ -0.57
CNEP1R1-202ENST00000427478 Q5VV11 94 aa11.45□□□□□ -0.58
CNEP1R1-202ENST00000427478 KRTAP3-1Q9BYR8 98 aa11.38□□□□□ -0.59
CNEP1R1-202ENST00000427478 TPRXLQ17RH7 258 aa11.38□□□□□ -0.59
CNEP1R1-202ENST00000427478 BRK1Q8WUW1 75 aa11.38□□□□□ -0.59
CNEP1R1-202ENST00000427478 ABCA13Q86UQ4 5058 aa11.34□□□□□ -0.59
CNEP1R1-202ENST00000427478 J3QL48 77 aa11.3□□□□□ -0.6
CNEP1R1-202ENST00000427478 COX6B2Q6YFQ2 88 aa11.3□□□□□ -0.6
CNEP1R1-202ENST00000427478 BIRC6Q9NR09 4857 aa11.28□□□□□ -0.6
CNEP1R1-202ENST00000427478 HERC2O95714 4834 aa11.24□□□□□ -0.61
CNEP1R1-202ENST00000427478 PRO0628Q9UI54 55 aa11.23□□□□□ -0.61
CNEP1R1-202ENST00000427478 LPAP08519 4548 aa11.23□□□□□ -0.61
CNEP1R1-202ENST00000427478 A0A1B0GU69 56 aa11.21□□□□□ -0.62
CNEP1R1-202ENST00000427478 A6NED7 52 aa11.2□□□□□ -0.62
CNEP1R1-202ENST00000427478 LRP2P98164 4655 aa11.19□□□□□ -0.62
CNEP1R1-202ENST00000427478 SPTSSBQ8NFR3 76 aa11.18□□□□□ -0.62
CNEP1R1-202ENST00000427478 A8MU10 97 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms