RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 MPLKIPQ8TAP9 179 aa11.15□□□□□ -0.62
MSH6-202ENST00000411819 BAALC-AS2P0C853 105 aa11.13□□□□□ -0.63
MSH6-202ENST00000411819 USH2AO75445 5202 aa11.13□□□□□ -0.63
MSH6-202ENST00000411819 C9JAW5 83 aa11.12□□□□□ -0.63
MSH6-202ENST00000411819 J3KT08 172 aa11.1□□□□□ -0.63
MSH6-202ENST00000411819 MT2AP02795 61 aa11.1□□□□□ -0.63
MSH6-202ENST00000411819 C21orf62-AS1Q17RA5 79 aa11.1□□□□□ -0.63
MSH6-202ENST00000411819 SSPOA2VEC9 5147 aa11.08□□□□□ -0.64
MSH6-202ENST00000411819 ZCCHC13Q8WW36 166 aaKnown RBP11.07□□□□□ -0.64
MSH6-202ENST00000411819 Q6ZQT0 140 aa11.06□□□□□ -0.64
MSH6-202ENST00000411819 NDUFB1O75438 58 aa11.04□□□□□ -0.64
MSH6-202ENST00000411819 MTURNQ8N3F0 131 aa11.04□□□□□ -0.64
MSH6-202ENST00000411819 NAA38Q9BRA0 125 aaKnown RBP11.03□□□□□ -0.64
MSH6-202ENST00000411819 ATXN8Q156A1 80 aa11.02□□□□□ -0.65
MSH6-202ENST00000411819 MT1FP04733 61 aa11.01□□□□□ -0.65
MSH6-202ENST00000411819 SPINK7P58062 85 aa11□□□□□ -0.65
MSH6-202ENST00000411819 JMJD7-PLA2G4BH0Y9G9 81 aa10.99□□□□□ -0.65
MSH6-202ENST00000411819 M0R143 59 aa10.99□□□□□ -0.65
MSH6-202ENST00000411819 KRTAP10-10P60014 251 aa10.98□□□□□ -0.65
MSH6-202ENST00000411819 LYRM7Q5U5X0 104 aa10.98□□□□□ -0.65
MSH6-202ENST00000411819 C8orf17Q9NRJ1 99 aa10.97□□□□□ -0.65
MSH6-202ENST00000411819 Q8N9P0 234 aaPredicted RBP10.96□□□□□ -0.65
MSH6-202ENST00000411819 LOC110117498A0A087WWA1 95 aa10.95□□□□□ -0.66
MSH6-202ENST00000411819 A8MWP4 228 aa10.95□□□□□ -0.66
MSH6-202ENST00000411819 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.93□□□□□ -0.66
MSH6-202ENST00000411819 A0A1B0GW54 56 aa10.92□□□□□ -0.66
MSH6-202ENST00000411819 C14orf132Q9NPU4 83 aa10.92□□□□□ -0.66
MSH6-202ENST00000411819 IGKV3D-7A0A0C4DH55 119 aa10.91□□□□□ -0.66
MSH6-202ENST00000411819 PDE6GP18545 87 aa10.91□□□□□ -0.66
MSH6-202ENST00000411819 LCE2BO14633 110 aa10.9□□□□□ -0.66
MSH6-202ENST00000411819 WFDC13Q8IUB5 93 aa10.9□□□□□ -0.66
MSH6-202ENST00000411819 KRTAP9-3Q9BYQ3 159 aa10.89□□□□□ -0.67
MSH6-202ENST00000411819 Q6ZVQ6 151 aa10.87□□□□□ -0.67
MSH6-202ENST00000411819 KRTAP9-7A8MTY7 169 aa10.86□□□□□ -0.67
MSH6-202ENST00000411819 NREPQ16612 68 aa10.84□□□□□ -0.67
MSH6-202ENST00000411819 PRR15Q8IV56 129 aa10.83□□□□□ -0.68
MSH6-202ENST00000411819 FCGBPQ9Y6R7 5405 aaPredicted RBP10.82□□□□□ -0.68
MSH6-202ENST00000411819 KRTAP19-1Q8IUB9 90 aa10.81□□□□□ -0.68
MSH6-202ENST00000411819 BATFQ16520 125 aa10.78□□□□□ -0.68
MSH6-202ENST00000411819 MMP24-AS1A0A0U1RRL7 71 aa10.77□□□□□ -0.69
MSH6-202ENST00000411819 TMEM254Q8TBM7 123 aa10.77□□□□□ -0.69
MSH6-202ENST00000411819 MRPL34Q9BQ48 92 aaKnown RBP10.77□□□□□ -0.69
MSH6-202ENST00000411819 SMIM6P0DI80 62 aa10.76□□□□□ -0.69
MSH6-202ENST00000411819 NDUFS5O43920 106 aa10.74□□□□□ -0.69
MSH6-202ENST00000411819 K7EQZ3 153 aa10.72□□□□□ -0.69
MSH6-202ENST00000411819 hDV103S1A0JD37 113 aa10.71□□□□□ -0.69
MSH6-202ENST00000411819 TSTD3H0UI37 97 aa10.7□□□□□ -0.7
MSH6-202ENST00000411819 H3BT86 120 aa10.67□□□□□ -0.7
MSH6-202ENST00000411819 BPY2O14599 106 aa10.63□□□□□ -0.71
MSH6-202ENST00000411819 IGKV2D-30A0A075B6S6 120 aa10.62□□□□□ -0.71
MSH6-202ENST00000411819 C9orf118A6NHY6 69 aa10.62□□□□□ -0.71
MSH6-202ENST00000411819 IGKV2-30P06310 120 aa10.62□□□□□ -0.71
MSH6-202ENST00000411819 H1FX-AS1Q4G0G2 97 aa10.62□□□□□ -0.71
MSH6-202ENST00000411819 LINC00846Q9NV44 126 aa10.6□□□□□ -0.71
MSH6-202ENST00000411819 A0A1W2PPM0 123 aa10.59□□□□□ -0.71
MSH6-202ENST00000411819 C7orf65Q6ZTY9 151 aa10.57□□□□□ -0.72
MSH6-202ENST00000411819 TAX1BP3O14907 124 aa10.56□□□□□ -0.72
MSH6-202ENST00000411819 MACF1Q9UPN3 7388 aaKnown RBP10.55□□□□□ -0.72
MSH6-202ENST00000411819 KRTAP19-6Q3LI70 58 aa10.54□□□□□ -0.72
MSH6-202ENST00000411819 Q5W150 140 aa10.54□□□□□ -0.72
MSH6-202ENST00000411819 Q8N9L7 120 aa10.54□□□□□ -0.72
MSH6-202ENST00000411819 CASC2Q6XLA1 102 aa10.52□□□□□ -0.73
MSH6-202ENST00000411819 HCG22E2RYF7 251 aa10.5□□□□□ -0.73
MSH6-202ENST00000411819 SYNE2Q8WXH0 6885 aaKnown RBP10.48□□□□□ -0.73
MSH6-202ENST00000411819 SPCS1Q9Y6A9 102 aa10.46□□□□□ -0.73
MSH6-202ENST00000411819 C4orf26Q17RF5 130 aa10.43□□□□□ -0.74
MSH6-202ENST00000411819 CXCL6P80162 114 aa10.4□□□□□ -0.74
MSH6-202ENST00000411819 SMCPP49901 116 aaPredicted RBP10.38□□□□□ -0.75
MSH6-202ENST00000411819 LOC105371267A0A1B0GV96 52 aa10.36□□□□□ -0.75
MSH6-202ENST00000411819 UBL5Q9BZL1 73 aa10.36□□□□□ -0.75
MSH6-202ENST00000411819 C5orf47Q569G3 176 aa10.31□□□□□ -0.76
MSH6-202ENST00000411819 FAM236AA0A1B0GUQ0 79 aa10.28□□□□□ -0.76
MSH6-202ENST00000411819 FAM236BA0A1B0GV22 79 aa10.28□□□□□ -0.76
MSH6-202ENST00000411819 PRO0461Q9UI25 63 aa10.25□□□□□ -0.77
MSH6-202ENST00000411819 S4R3F8 94 aa10.24□□□□□ -0.77
MSH6-202ENST00000411819 COL5A1-AS1Q5SY13 56 aa10.23□□□□□ -0.77
MSH6-202ENST00000411819 K7EP34 96 aa10.22□□□□□ -0.77
MSH6-202ENST00000411819 KRTAP3-1Q9BYR8 98 aa10.21□□□□□ -0.77
MSH6-202ENST00000411819 C1orf64Q8NEQ6 169 aa10.2□□□□□ -0.78
MSH6-202ENST00000411819 CSAG1Q6PB30 78 aa10.16□□□□□ -0.78
MSH6-202ENST00000411819 LCA10Q71F78 164 aa10.15□□□□□ -0.78
MSH6-202ENST00000411819 TP53AIP1Q9HCN2 124 aa10.15□□□□□ -0.78
MSH6-202ENST00000411819 KRTAP6-3Q3LI67 103 aa10.14□□□□□ -0.79
MSH6-202ENST00000411819 Q5VV11 94 aa10.07□□□□□ -0.8
MSH6-202ENST00000411819 GTF2H5Q6ZYL4 71 aa10.07□□□□□ -0.8
MSH6-202ENST00000411819 A6NN06 94 aa10.06□□□□□ -0.8
MSH6-202ENST00000411819 MT1BP07438 61 aa10.05□□□□□ -0.8
MSH6-202ENST00000411819 ETDBQ3ZM63 59 aa10.02□□□□□ -0.81
MSH6-202ENST00000411819 SPRR2GQ9BYE4 73 aa10.02□□□□□ -0.81
MSH6-202ENST00000411819 F8W1H4 67 aa10□□□□□ -0.81
MSH6-202ENST00000411819 KRTAP19-8Q3LI54 63 aa9.99□□□□□ -0.81
MSH6-202ENST00000411819 KLKP1Q107X0 134 aa9.98□□□□□ -0.81
MSH6-202ENST00000411819 CYP4F30PQ9H0H9 118 aa9.97□□□□□ -0.81
MSH6-202ENST00000411819 TRAV22A0A0B4J277 110 aa9.94□□□□□ -0.82
MSH6-202ENST00000411819 KRTAP3-3Q9BYR6 98 aa9.94□□□□□ -0.82
MSH6-202ENST00000411819 LOC101927531A0A1B0GV80 90 aa9.9□□□□□ -0.82
MSH6-202ENST00000411819 A0A087WVE0 104 aa9.88□□□□□ -0.83
MSH6-202ENST00000411819 PCP4L1A6NKN8 68 aa9.86□□□□□ -0.83
MSH6-202ENST00000411819 KRTAP10-5P60370 271 aa9.86□□□□□ -0.83
MSH6-202ENST00000411819 NEBP20929 6669 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms