RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 KMT2CQ8NEZ4 4911 aaKnown RBP11.69□□□□□ -0.54
USP39-204ENST00000409766 A0A1B0GVY2 172 aa11.69□□□□□ -0.54
USP39-204ENST00000409766 LINC00208Q96KT6 92 aa11.69□□□□□ -0.54
USP39-204ENST00000409766 NOTCH2NLQ7Z3S9 236 aa11.68□□□□□ -0.54
USP39-204ENST00000409766 H3BPC8 53 aa11.67□□□□□ -0.54
USP39-204ENST00000409766 DYNC1H1Q14204 4646 aaKnown RBP11.67□□□□□ -0.54
USP39-204ENST00000409766 TP53AIP1Q9HCN2 124 aa11.65□□□□□ -0.54
USP39-204ENST00000409766 Q5XG85 94 aa11.65□□□□□ -0.54
USP39-204ENST00000409766 TRAV22A0A0B4J277 110 aa11.64□□□□□ -0.55
USP39-204ENST00000409766 MRPL34Q9BQ48 92 aaKnown RBP11.64□□□□□ -0.55
USP39-204ENST00000409766 PLA2G1BP04054 148 aaKnown RBP11.63□□□□□ -0.55
USP39-204ENST00000409766 C1orf64Q8NEQ6 169 aa11.6□□□□□ -0.55
USP39-204ENST00000409766 C1orf195Q5TG92 126 aa11.58□□□□□ -0.56
USP39-204ENST00000409766 NDUFS5O43920 106 aa11.57□□□□□ -0.56
USP39-204ENST00000409766 APOBP04114 4563 aaKnown RBP11.55□□□□□ -0.56
USP39-204ENST00000409766 SMR3BP02814 79 aaPredicted RBP11.55□□□□□ -0.56
USP39-204ENST00000409766 TYMSOSQ8TAI1 123 aa11.55□□□□□ -0.56
USP39-204ENST00000409766 C8orf87E5RJ46 101 aa11.54□□□□□ -0.56
USP39-204ENST00000409766 LIMD2Q9BT23 127 aa11.53□□□□□ -0.56
USP39-204ENST00000409766 CYP4F30PQ9H0H9 118 aa11.52□□□□□ -0.56
USP39-204ENST00000409766 SMIM26A0A096LP01 95 aa11.5□□□□□ -0.57
USP39-204ENST00000409766 C4orf48Q5BLP8 95 aa11.5□□□□□ -0.57
USP39-204ENST00000409766 PRR4Q16378 134 aa11.48□□□□□ -0.57
USP39-204ENST00000409766 SPANXA2-OT1Q8N9U9 137 aa11.48□□□□□ -0.57
USP39-204ENST00000409766 SPINK1P00995 79 aa11.48□□□□□ -0.57
USP39-204ENST00000409766 LINC00313P59037 77 aa11.48□□□□□ -0.57
USP39-204ENST00000409766 KRTAP10-4P60372 401 aaPredicted RBP11.47□□□□□ -0.57
USP39-204ENST00000409766 FAT1Q14517 4588 aa11.47□□□□□ -0.57
USP39-204ENST00000409766 PRR26Q8N8Z3 221 aa11.47□□□□□ -0.57
USP39-204ENST00000409766 FP248Q71RG6 208 aaPredicted RBP11.46□□□□□ -0.57
USP39-204ENST00000409766 KRTAP13-3Q3SY46 172 aa11.42□□□□□ -0.58
USP39-204ENST00000409766 Q5W150 140 aa11.42□□□□□ -0.58
USP39-204ENST00000409766 C4orf26Q17RF5 130 aa11.42□□□□□ -0.58
USP39-204ENST00000409766 RYR3Q15413 4870 aa11.42□□□□□ -0.58
USP39-204ENST00000409766 Q8N9P0 234 aaPredicted RBP11.4□□□□□ -0.59
USP39-204ENST00000409766 LINC00304Q8N9R0 145 aa11.4□□□□□ -0.59
USP39-204ENST00000409766 PCOTHQ58A44 107 aa11.38□□□□□ -0.59
USP39-204ENST00000409766 RPS29P62273 56 aaKnown RBP11.38□□□□□ -0.59
USP39-204ENST00000409766 IGLV7-46A0A075B6I9 117 aa11.37□□□□□ -0.59
USP39-204ENST00000409766 KRTAP16-1A8MUX0 517 aa11.37□□□□□ -0.59
USP39-204ENST00000409766 SPAG11AQ6PDA7 123 aa11.36□□□□□ -0.59
USP39-204ENST00000409766 LOC101927531A0A1B0GV80 90 aa11.34□□□□□ -0.59
USP39-204ENST00000409766 PKHD1L1Q86WI1 4243 aa11.32□□□□□ -0.6
USP39-204ENST00000409766 FAM229AH3BQW9 127 aa11.3□□□□□ -0.6
USP39-204ENST00000409766 MPLKIPQ8TAP9 179 aa11.28□□□□□ -0.6
USP39-204ENST00000409766 RETNLBQ9BQ08 111 aa11.22□□□□□ -0.61
USP39-204ENST00000409766 Q1T7F1 81 aa11.19□□□□□ -0.62
USP39-204ENST00000409766 COA5Q86WW8 74 aa11.18□□□□□ -0.62
USP39-204ENST00000409766 IGKV2-30P06310 120 aa11.16□□□□□ -0.62
USP39-204ENST00000409766 HSPG2P98160 4391 aa11.16□□□□□ -0.62
USP39-204ENST00000409766 HRES1P13985 223 aa11.11□□□□□ -0.63
USP39-204ENST00000409766 Q5VSD8 79 aa11.09□□□□□ -0.63
USP39-204ENST00000409766 V9GYY9 64 aa11.06□□□□□ -0.64
USP39-204ENST00000409766 RYR1P21817 5038 aa11.05□□□□□ -0.64
USP39-204ENST00000409766 FLG2Q5D862 2391 aaPredicted RBP11.05□□□□□ -0.64
USP39-204ENST00000409766 LRP1Q07954 4544 aaKnown RBP11.04□□□□□ -0.64
USP39-204ENST00000409766 TNXBP22105 4242 aa11.04□□□□□ -0.64
USP39-204ENST00000409766 IGKV2D-30A0A075B6S6 120 aa11.03□□□□□ -0.64
USP39-204ENST00000409766 SVIPQ8NHG7 77 aa11.03□□□□□ -0.64
USP39-204ENST00000409766 KRTAP17-1Q9BYP8 105 aa11.03□□□□□ -0.64
USP39-204ENST00000409766 C9orf92A6NGG3 77 aa11.02□□□□□ -0.64
USP39-204ENST00000409766 KRTAP10-8P60410 259 aa11.02□□□□□ -0.65
USP39-204ENST00000409766 Q8N1X5 172 aa11.02□□□□□ -0.65
USP39-204ENST00000409766 DMAC1Q96GE9 116 aa11.01□□□□□ -0.65
USP39-204ENST00000409766 EPPK1P58107 5090 aaKnown RBP11.01□□□□□ -0.65
USP39-204ENST00000409766 PSPHP1O15172 72 aa10.99□□□□□ -0.65
USP39-204ENST00000409766 ACYP2P14621 99 aa10.99□□□□□ -0.65
USP39-204ENST00000409766 C20orf166-AS1Q96NR2 134 aa10.99□□□□□ -0.65
USP39-204ENST00000409766 A8MUU9 505 aa10.99□□□□□ -0.65
USP39-204ENST00000409766 KIAA1109Q2LD37 5005 aa10.97□□□□□ -0.65
USP39-204ENST00000409766 A8MUN3 132 aa10.95□□□□□ -0.66
USP39-204ENST00000409766 FAT3Q8TDW7 4589 aa10.94□□□□□ -0.66
USP39-204ENST00000409766 C7orf65Q6ZTY9 151 aa10.92□□□□□ -0.66
USP39-204ENST00000409766 Q5VV11 94 aa10.89□□□□□ -0.67
USP39-204ENST00000409766 BRK1Q8WUW1 75 aa10.87□□□□□ -0.67
USP39-204ENST00000409766 PRR15LQ9BU68 103 aa10.87□□□□□ -0.67
USP39-204ENST00000409766 LINC01558Q9Y6Z2 57 aa10.87□□□□□ -0.67
USP39-204ENST00000409766 PRO0628Q9UI54 55 aa10.85□□□□□ -0.67
USP39-204ENST00000409766 CHKB-CPT1BH3BT56 60 aa10.82□□□□□ -0.68
USP39-204ENST00000409766 Q75L30 129 aa10.82□□□□□ -0.68
USP39-204ENST00000409766 DMBT1Q9UGM3 2413 aaPredicted RBP10.79□□□□□ -0.68
USP39-204ENST00000409766 MYCBP2O75592 4640 aa10.78□□□□□ -0.68
USP39-204ENST00000409766 MT1HL1P0DM35 61 aa10.76□□□□□ -0.69
USP39-204ENST00000409766 SPINK7P58062 85 aa10.72□□□□□ -0.69
USP39-204ENST00000409766 KRTAP4-5Q9BYR2 181 aa10.67□□□□□ -0.7
USP39-204ENST00000409766 ATP11AUNQ6ZP68 121 aa10.62□□□□□ -0.71
USP39-204ENST00000409766 A6NED7 52 aa10.62□□□□□ -0.71
USP39-204ENST00000409766 RPL37P61927 97 aaKnown RBP10.62□□□□□ -0.71
USP39-204ENST00000409766 XP32Q5T750 250 aa10.62□□□□□ -0.71
USP39-204ENST00000409766 KRTAP3-1Q9BYR8 98 aa10.62□□□□□ -0.71
USP39-204ENST00000409766 A8MU10 97 aa10.6□□□□□ -0.71
USP39-204ENST00000409766 LCA10Q71F78 164 aa10.56□□□□□ -0.72
USP39-204ENST00000409766 A0A1B0GU69 56 aa10.55□□□□□ -0.72
USP39-204ENST00000409766 COX6B2Q6YFQ2 88 aa10.5□□□□□ -0.73
USP39-204ENST00000409766 CDC42SE1Q9NRR8 79 aa10.5□□□□□ -0.73
USP39-204ENST00000409766 BIRC6Q9NR09 4857 aa10.47□□□□□ -0.73
USP39-204ENST00000409766 SPTSSBQ8NFR3 76 aa10.46□□□□□ -0.74
USP39-204ENST00000409766 ABCA13Q86UQ4 5058 aa10.42□□□□□ -0.74
USP39-204ENST00000409766 TPRXLQ17RH7 258 aa10.41□□□□□ -0.74
USP39-204ENST00000409766 HERC2O95714 4834 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms