RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ZCCHC13Q8WW36 166 aaKnown RBP11.97□□□□□ -0.49
USP39-203ENST00000409470 Q5XG85 94 aa11.96□□□□□ -0.49
USP39-203ENST00000409470 H0Y9P7 68 aa11.96□□□□□ -0.5
USP39-203ENST00000409470 C4orf48Q5BLP8 95 aa11.96□□□□□ -0.5
USP39-203ENST00000409470 NOTCH2NLQ7Z3S9 236 aa11.96□□□□□ -0.5
USP39-203ENST00000409470 RPS28P62857 69 aaKnown RBP11.95□□□□□ -0.5
USP39-203ENST00000409470 APOBP04114 4563 aaKnown RBP11.94□□□□□ -0.5
USP39-203ENST00000409470 LIMD2Q9BT23 127 aa11.94□□□□□ -0.5
USP39-203ENST00000409470 NDUFS5O43920 106 aa11.93□□□□□ -0.5
USP39-203ENST00000409470 LINC00208Q96KT6 92 aa11.93□□□□□ -0.5
USP39-203ENST00000409470 MRPL34Q9BQ48 92 aaKnown RBP11.93□□□□□ -0.5
USP39-203ENST00000409470 C1orf195Q5TG92 126 aa11.92□□□□□ -0.5
USP39-203ENST00000409470 TP53AIP1Q9HCN2 124 aa11.92□□□□□ -0.5
USP39-203ENST00000409470 ATP5EP56381 51 aaPredicted RBP11.91□□□□□ -0.5
USP39-203ENST00000409470 PRR26Q8N8Z3 221 aa11.91□□□□□ -0.5
USP39-203ENST00000409470 TRAV22A0A0B4J277 110 aa11.89□□□□□ -0.51
USP39-203ENST00000409470 H3BPC8 53 aa11.89□□□□□ -0.51
USP39-203ENST00000409470 C8orf87E5RJ46 101 aa11.87□□□□□ -0.51
USP39-203ENST00000409470 SPINK1P00995 79 aa11.87□□□□□ -0.51
USP39-203ENST00000409470 KRTAP10-4P60372 401 aaPredicted RBP11.86□□□□□ -0.51
USP39-203ENST00000409470 FAT1Q14517 4588 aa11.86□□□□□ -0.51
USP39-203ENST00000409470 SERP1Q9Y6X1 66 aa11.85□□□□□ -0.51
USP39-203ENST00000409470 C1orf64Q8NEQ6 169 aa11.84□□□□□ -0.51
USP39-203ENST00000409470 LINC00304Q8N9R0 145 aa11.83□□□□□ -0.52
USP39-203ENST00000409470 OXTP01178 125 aa11.82□□□□□ -0.52
USP39-203ENST00000409470 LINC00313P59037 77 aa11.82□□□□□ -0.52
USP39-203ENST00000409470 SPAG11AQ6PDA7 123 aa11.78□□□□□ -0.52
USP39-203ENST00000409470 RPS29P62273 56 aaKnown RBP11.74□□□□□ -0.53
USP39-203ENST00000409470 FAM229AH3BQW9 127 aa11.73□□□□□ -0.53
USP39-203ENST00000409470 PRR4Q16378 134 aa11.71□□□□□ -0.53
USP39-203ENST00000409470 RYR3Q15413 4870 aa11.7□□□□□ -0.54
USP39-203ENST00000409470 Q5W150 140 aa11.67□□□□□ -0.54
USP39-203ENST00000409470 Q8N9P0 234 aaPredicted RBP11.66□□□□□ -0.54
USP39-203ENST00000409470 SPANXA2-OT1Q8N9U9 137 aa11.65□□□□□ -0.54
USP39-203ENST00000409470 PCOTHQ58A44 107 aa11.65□□□□□ -0.54
USP39-203ENST00000409470 CYP4F30PQ9H0H9 118 aa11.65□□□□□ -0.54
USP39-203ENST00000409470 KRTAP16-1A8MUX0 517 aa11.64□□□□□ -0.55
USP39-203ENST00000409470 KRTAP13-3Q3SY46 172 aa11.62□□□□□ -0.55
USP39-203ENST00000409470 Q5VSD8 79 aa11.62□□□□□ -0.55
USP39-203ENST00000409470 PKHD1L1Q86WI1 4243 aa11.61□□□□□ -0.55
USP39-203ENST00000409470 LOC101927531A0A1B0GV80 90 aa11.6□□□□□ -0.55
USP39-203ENST00000409470 SMIM26A0A096LP01 95 aa11.59□□□□□ -0.55
USP39-203ENST00000409470 RETNLBQ9BQ08 111 aa11.58□□□□□ -0.56
USP39-203ENST00000409470 HSPG2P98160 4391 aa11.57□□□□□ -0.56
USP39-203ENST00000409470 IGLV7-46A0A075B6I9 117 aa11.55□□□□□ -0.56
USP39-203ENST00000409470 FP248Q71RG6 208 aaPredicted RBP11.5□□□□□ -0.57
USP39-203ENST00000409470 RYR1P21817 5038 aa11.46□□□□□ -0.57
USP39-203ENST00000409470 C4orf26Q17RF5 130 aa11.45□□□□□ -0.58
USP39-203ENST00000409470 Q8N1X5 172 aa11.45□□□□□ -0.58
USP39-203ENST00000409470 C9orf92A6NGG3 77 aa11.43□□□□□ -0.58
USP39-203ENST00000409470 IGKV2-30P06310 120 aa11.43□□□□□ -0.58
USP39-203ENST00000409470 KRTAP10-8P60410 259 aa11.43□□□□□ -0.58
USP39-203ENST00000409470 MPLKIPQ8TAP9 179 aa11.42□□□□□ -0.58
USP39-203ENST00000409470 KRTAP17-1Q9BYP8 105 aa11.4□□□□□ -0.58
USP39-203ENST00000409470 SVIPQ8NHG7 77 aa11.4□□□□□ -0.59
USP39-203ENST00000409470 LRP1Q07954 4544 aaKnown RBP11.4□□□□□ -0.59
USP39-203ENST00000409470 FLG2Q5D862 2391 aaPredicted RBP11.38□□□□□ -0.59
USP39-203ENST00000409470 COA5Q86WW8 74 aa11.37□□□□□ -0.59
USP39-203ENST00000409470 IGKV2D-30A0A075B6S6 120 aa11.36□□□□□ -0.59
USP39-203ENST00000409470 TNXBP22105 4242 aa11.36□□□□□ -0.59
USP39-203ENST00000409470 HRES1P13985 223 aa11.36□□□□□ -0.59
USP39-203ENST00000409470 KIAA1109Q2LD37 5005 aa11.33□□□□□ -0.6
USP39-203ENST00000409470 C20orf166-AS1Q96NR2 134 aa11.31□□□□□ -0.6
USP39-203ENST00000409470 A8MUU9 505 aa11.3□□□□□ -0.6
USP39-203ENST00000409470 EPPK1P58107 5090 aaKnown RBP11.27□□□□□ -0.61
USP39-203ENST00000409470 Q1T7F1 81 aa11.27□□□□□ -0.61
USP39-203ENST00000409470 FAT3Q8TDW7 4589 aa11.27□□□□□ -0.61
USP39-203ENST00000409470 C7orf65Q6ZTY9 151 aa11.24□□□□□ -0.61
USP39-203ENST00000409470 ACYP2P14621 99 aa11.23□□□□□ -0.61
USP39-203ENST00000409470 DMAC1Q96GE9 116 aa11.23□□□□□ -0.61
USP39-203ENST00000409470 V9GYY9 64 aa11.19□□□□□ -0.62
USP39-203ENST00000409470 DMBT1Q9UGM3 2413 aaPredicted RBP11.19□□□□□ -0.62
USP39-203ENST00000409470 MT1HL1P0DM35 61 aa11.18□□□□□ -0.62
USP39-203ENST00000409470 Q75L30 129 aa11.16□□□□□ -0.62
USP39-203ENST00000409470 MYCBP2O75592 4640 aa11.13□□□□□ -0.63
USP39-203ENST00000409470 PSPHP1O15172 72 aa11.13□□□□□ -0.63
USP39-203ENST00000409470 CHKB-CPT1BH3BT56 60 aa11.11□□□□□ -0.63
USP39-203ENST00000409470 A8MUN3 132 aa11.07□□□□□ -0.64
USP39-203ENST00000409470 SPINK7P58062 85 aa11.04□□□□□ -0.64
USP39-203ENST00000409470 PRR15LQ9BU68 103 aa11.04□□□□□ -0.64
USP39-203ENST00000409470 ATP11AUNQ6ZP68 121 aa11.03□□□□□ -0.64
USP39-203ENST00000409470 KRTAP4-5Q9BYR2 181 aa11.01□□□□□ -0.65
USP39-203ENST00000409470 XP32Q5T750 250 aa10.99□□□□□ -0.65
USP39-203ENST00000409470 LINC01558Q9Y6Z2 57 aa10.99□□□□□ -0.65
USP39-203ENST00000409470 RPL37P61927 97 aaKnown RBP10.99□□□□□ -0.65
USP39-203ENST00000409470 Q5VV11 94 aa10.97□□□□□ -0.65
USP39-203ENST00000409470 BRK1Q8WUW1 75 aa10.96□□□□□ -0.66
USP39-203ENST00000409470 KRTAP3-1Q9BYR8 98 aa10.84□□□□□ -0.67
USP39-203ENST00000409470 PRO0628Q9UI54 55 aa10.84□□□□□ -0.67
USP39-203ENST00000409470 TPRXLQ17RH7 258 aa10.82□□□□□ -0.68
USP39-203ENST00000409470 COX6B2Q6YFQ2 88 aa10.8□□□□□ -0.68
USP39-203ENST00000409470 A6NED7 52 aa10.77□□□□□ -0.68
USP39-203ENST00000409470 A0A1B0GU69 56 aa10.76□□□□□ -0.69
USP39-203ENST00000409470 J3QL48 77 aa10.74□□□□□ -0.69
USP39-203ENST00000409470 SPTSSBQ8NFR3 76 aa10.74□□□□□ -0.69
USP39-203ENST00000409470 ABCA13Q86UQ4 5058 aa10.72□□□□□ -0.69
USP39-203ENST00000409470 BIRC6Q9NR09 4857 aa10.66□□□□□ -0.7
USP39-203ENST00000409470 HERC2O95714 4834 aa10.64□□□□□ -0.71
USP39-203ENST00000409470 A8MU10 97 aa10.63□□□□□ -0.71
USP39-203ENST00000409470 LRP2P98164 4655 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms