RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
SCN9A-202ENST00000409435 TRIOO75962 3097 aa4.08□□□□□ -1.76
SCN9A-202ENST00000409435 KRTAP10-10P60014 251 aa4.07□□□□□ -1.76
SCN9A-202ENST00000409435 TNP1P09430 55 aa4.06□□□□□ -1.76
SCN9A-202ENST00000409435 COL12A1Q99715 3063 aa4.06□□□□□ -1.76
SCN9A-202ENST00000409435 CDH23Q9H251 3354 aa4.05□□□□□ -1.76
SCN9A-202ENST00000409435 DMXL2Q8TDJ6 3036 aa4.04□□□□□ -1.76
SCN9A-202ENST00000409435 XIRP2A4UGR9 3374 aa4.03□□□□□ -1.76
SCN9A-202ENST00000409435 P0C880 135 aa4.03□□□□□ -1.76
SCN9A-202ENST00000409435 TACC2O95359 2948 aa4.02□□□□□ -1.77
SCN9A-202ENST00000409435 LAMA2P24043 3122 aaKnown RBP4.01□□□□□ -1.77
SCN9A-202ENST00000409435 TENM2Q9NT68 2774 aa4.01□□□□□ -1.77
SCN9A-202ENST00000409435 NBEAQ8NFP9 2946 aa4.01□□□□□ -1.77
SCN9A-202ENST00000409435 ATMQ13315 3056 aa4.01□□□□□ -1.77
SCN9A-202ENST00000409435 XP32Q5T750 250 aa4.01□□□□□ -1.77
SCN9A-202ENST00000409435 LRBAP50851 2863 aa3.97□□□□□ -1.77
SCN9A-202ENST00000409435 PRO2289Q9P1D8 64 aa3.97□□□□□ -1.77
SCN9A-202ENST00000409435 KRTAP10-8P60410 259 aa3.95□□□□□ -1.78
SCN9A-202ENST00000409435 KRTAP13-1Q8IUC0 172 aa3.95□□□□□ -1.78
SCN9A-202ENST00000409435 KRTAP1-4P0C5Y4 121 aa3.94□□□□□ -1.78
SCN9A-202ENST00000409435 NBEAL2Q6ZNJ1 2754 aa3.93□□□□□ -1.78
SCN9A-202ENST00000409435 DMXL1Q9Y485 3027 aa3.93□□□□□ -1.78
SCN9A-202ENST00000409435 NIPBLQ6KC79 2804 aaeCLIP3.92□□□□□ -1.78
SCN9A-202ENST00000409435 LAMA1P25391 3075 aa3.92□□□□□ -1.78
SCN9A-202ENST00000409435 KALRNO60229 2985 aa3.91□□□□□ -1.78
SCN9A-202ENST00000409435 KRTAP13-3Q3SY46 172 aa3.91□□□□□ -1.78
SCN9A-202ENST00000409435 KRTAP7-1Q8IUC3 87 aa3.89□□□□□ -1.79
SCN9A-202ENST00000409435 TENM1Q9UKZ4 2725 aa3.89□□□□□ -1.79
SCN9A-202ENST00000409435 SPTBN5Q9NRC6 3674 aaKnown RBP3.88□□□□□ -1.79
SCN9A-202ENST00000409435 VCANP13611 3396 aa3.87□□□□□ -1.79
SCN9A-202ENST00000409435 VPS13AQ96RL7 3174 aa3.87□□□□□ -1.79
SCN9A-202ENST00000409435 TENM3Q9P273 2699 aa3.86□□□□□ -1.79
SCN9A-202ENST00000409435 NF1P21359 2839 aa3.85□□□□□ -1.79
SCN9A-202ENST00000409435 FBN3Q75N90 2809 aa3.84□□□□□ -1.79
SCN9A-202ENST00000409435 FBN2P35556 2912 aa3.84□□□□□ -1.79
SCN9A-202ENST00000409435 MXRA5Q9NR99 2828 aa3.84□□□□□ -1.79
SCN9A-202ENST00000409435 ZZEF1O43149 2961 aa3.84□□□□□ -1.79
SCN9A-202ENST00000409435 H0YAA0 97 aa3.83□□□□□ -1.8
SCN9A-202ENST00000409435 CFAP47Q6ZTR5 3102 aa3.83□□□□□ -1.8
SCN9A-202ENST00000409435 CELSR2Q9HCU4 2923 aa3.82□□□□□ -1.8
SCN9A-202ENST00000409435 PDZD2O15018 2839 aa3.82□□□□□ -1.8
SCN9A-202ENST00000409435 NBPF19A0A087WUL8 3843 aa3.81□□□□□ -1.8
SCN9A-202ENST00000409435 KRTAP4-5Q9BYR2 181 aa3.8□□□□□ -1.8
SCN9A-202ENST00000409435 BOD1L1Q8NFC6 3051 aa3.79□□□□□ -1.8
SCN9A-202ENST00000409435 DCHS2Q6V1P9 2916 aa3.77□□□□□ -1.81
SCN9A-202ENST00000409435 OTOGQ6ZRI0 2925 aa3.75□□□□□ -1.81
SCN9A-202ENST00000409435 PKD1L1Q8TDX9 2849 aa3.75□□□□□ -1.81
SCN9A-202ENST00000409435 CELSR3Q9NYQ7 3312 aa3.75□□□□□ -1.81
SCN9A-202ENST00000409435 ADGRG4Q8IZF6 3080 aa3.75□□□□□ -1.81
SCN9A-202ENST00000409435 INE1O15225 51 aa3.74□□□□□ -1.81
SCN9A-202ENST00000409435 FREM2Q5SZK8 3169 aa3.74□□□□□ -1.81
SCN9A-202ENST00000409435 ZFHX3Q15911 3703 aa3.7□□□□□ -1.82
SCN9A-202ENST00000409435 ZANQ9Y493 2812 aa3.69□□□□□ -1.82
SCN9A-202ENST00000409435 SPEGQ15772 3267 aa3.68□□□□□ -1.82
SCN9A-202ENST00000409435 MT1HL1P0DM35 61 aa3.67□□□□□ -1.82
SCN9A-202ENST00000409435 ANK3Q12955 4377 aaKnown RBP3.65□□□□□ -1.82
SCN9A-202ENST00000409435 HRNRQ86YZ3 2850 aaPredicted RBP3.64□□□□□ -1.83
SCN9A-202ENST00000409435 CELSR1Q9NYQ6 3014 aa3.64□□□□□ -1.83
SCN9A-202ENST00000409435 ALMS1Q8TCU4 4167 aa3.64□□□□□ -1.83
SCN9A-202ENST00000409435 FBN1P35555 2871 aaKnown RBP3.64□□□□□ -1.83
SCN9A-202ENST00000409435 VWFP04275 2813 aa3.61□□□□□ -1.83
SCN9A-202ENST00000409435 DNAH14Q0VDD8 3507 aa3.61□□□□□ -1.83
SCN9A-202ENST00000409435 TGP01266 2768 aa3.6□□□□□ -1.83
SCN9A-202ENST00000409435 KRTAP12-2P59991 146 aa3.6□□□□□ -1.83
SCN9A-202ENST00000409435 DCHS1Q96JQ0 3298 aa3.59□□□□□ -1.84
SCN9A-202ENST00000409435 MYO15AQ9UKN7 3530 aa3.57□□□□□ -1.84
SCN9A-202ENST00000409435 KRTAP13-4Q3LI77 160 aa3.57□□□□□ -1.84
SCN9A-202ENST00000409435 KRTAP23-1A1A580 65 aa3.55□□□□□ -1.84
SCN9A-202ENST00000409435 LOC400499M0QZD8 3231 aa3.52□□□□□ -1.85
SCN9A-202ENST00000409435 KRTAP15-1Q3LI76 137 aa3.51□□□□□ -1.85
SCN9A-202ENST00000409435 RELNP78509 3460 aa3.49□□□□□ -1.85
SCN9A-202ENST00000409435 LORP23490 312 aaPredicted RBP3.48□□□□□ -1.85
SCN9A-202ENST00000409435 WDFY3Q8IZQ1 3526 aa3.48□□□□□ -1.85
SCN9A-202ENST00000409435 KRTAP12-1P59990 96 aa3.45□□□□□ -1.86
SCN9A-202ENST00000409435 KRTAP10-4P60372 401 aaPredicted RBP3.45□□□□□ -1.86
SCN9A-202ENST00000409435 ASPMQ8IZT6 3477 aa3.42□□□□□ -1.86
SCN9A-202ENST00000409435 KRTAP17-1Q9BYP8 105 aa3.41□□□□□ -1.86
SCN9A-202ENST00000409435 HUWE1Q7Z6Z7 4374 aaKnown RBP3.41□□□□□ -1.86
SCN9A-202ENST00000409435 MUC3AQ02505 3323 aa3.41□□□□□ -1.86
SCN9A-202ENST00000409435 LAMA5O15230 3695 aa3.39□□□□□ -1.87
SCN9A-202ENST00000409435 SRRM2Q9UQ35 2752 aaKnown RBP3.39□□□□□ -1.87
SCN9A-202ENST00000409435 DNAH1Q9P2D7 4330 aa3.37□□□□□ -1.87
SCN9A-202ENST00000409435 CSMD1Q96PZ7 3565 aa3.36□□□□□ -1.87
SCN9A-202ENST00000409435 SMG1Q96Q15 3661 aaKnown RBP3.36□□□□□ -1.87
SCN9A-202ENST00000409435 COL7A1Q02388 2944 aa3.35□□□□□ -1.87
SCN9A-202ENST00000409435 ZFHX4Q86UP3 3567 aa3.34□□□□□ -1.87
SCN9A-202ENST00000409435 KRTAP8-1Q8IUC2 63 aa3.33□□□□□ -1.88
SCN9A-202ENST00000409435 DNHD1Q96M86 4753 aa3.32□□□□□ -1.88
SCN9A-202ENST00000409435 CSMD2Q7Z408 3487 aa3.31□□□□□ -1.88
SCN9A-202ENST00000409435 DNAH9Q9NYC9 4486 aa3.3□□□□□ -1.88
SCN9A-202ENST00000409435 DMDP11532 3685 aa3.3□□□□□ -1.88
SCN9A-202ENST00000409435 TRRAPQ9Y4A5 3859 aa3.29□□□□□ -1.88
SCN9A-202ENST00000409435 KRTAP10-6P60371 365 aaPredicted RBP3.29□□□□□ -1.88
SCN9A-202ENST00000409435 DNAH11Q96DT5 4516 aa3.29□□□□□ -1.88
SCN9A-202ENST00000409435 MT1HP80294 61 aa3.27□□□□□ -1.89
SCN9A-202ENST00000409435 CRCT1Q9UGL9 99 aa3.27□□□□□ -1.89
SCN9A-202ENST00000409435 AKAP9Q99996 3911 aa3.25□□□□□ -1.89
SCN9A-202ENST00000409435 MEGF8Q7Z7M0 2845 aa3.23□□□□□ -1.89
SCN9A-202ENST00000409435 KRTAP10-12P60413 245 aa3.22□□□□□ -1.89
SCN9A-202ENST00000409435 DNAH5Q8TE73 4624 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms