RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 RPS28P62857 69 aaKnown RBP14.27□□□□□ -0.13
DNMT3A-206ENST00000406659 ZCCHC13Q8WW36 166 aaKnown RBP14.27□□□□□ -0.13
DNMT3A-206ENST00000406659 C4orf48Q5BLP8 95 aa14.26□□□□□ -0.13
DNMT3A-206ENST00000406659 H0Y9P7 68 aa14.24□□□□□ -0.13
DNMT3A-206ENST00000406659 LIMD2Q9BT23 127 aa14.24□□□□□ -0.13
DNMT3A-206ENST00000406659 NOTCH2NLQ7Z3S9 236 aa14.23□□□□□ -0.13
DNMT3A-206ENST00000406659 ATP5EP56381 51 aaPredicted RBP14.22□□□□□ -0.13
DNMT3A-206ENST00000406659 KMT2CQ8NEZ4 4911 aaKnown RBP14.22□□□□□ -0.13
DNMT3A-206ENST00000406659 MRPL34Q9BQ48 92 aaKnown RBP14.22□□□□□ -0.13
DNMT3A-206ENST00000406659 TP53AIP1Q9HCN2 124 aa14.22□□□□□ -0.13
DNMT3A-206ENST00000406659 C1orf195Q5TG92 126 aa14.21□□□□□ -0.13
DNMT3A-206ENST00000406659 LINC00208Q96KT6 92 aa14.21□□□□□ -0.13
DNMT3A-206ENST00000406659 H3BPC8 53 aa14.2□□□□□ -0.14
DNMT3A-206ENST00000406659 NDUFS5O43920 106 aa14.19□□□□□ -0.14
DNMT3A-206ENST00000406659 PRR26Q8N8Z3 221 aa14.17□□□□□ -0.14
DNMT3A-206ENST00000406659 TRAV22A0A0B4J277 110 aa14.17□□□□□ -0.14
DNMT3A-206ENST00000406659 C8orf87E5RJ46 101 aa14.17□□□□□ -0.14
DNMT3A-206ENST00000406659 SPINK1P00995 79 aa14.15□□□□□ -0.14
DNMT3A-206ENST00000406659 KRTAP10-4P60372 401 aaPredicted RBP14.15□□□□□ -0.14
DNMT3A-206ENST00000406659 APOBP04114 4563 aaKnown RBP14.14□□□□□ -0.15
DNMT3A-206ENST00000406659 SERP1Q9Y6X1 66 aa14.14□□□□□ -0.15
DNMT3A-206ENST00000406659 C1orf64Q8NEQ6 169 aa14.11□□□□□ -0.15
DNMT3A-206ENST00000406659 LINC00304Q8N9R0 145 aa14.1□□□□□ -0.15
DNMT3A-206ENST00000406659 LINC00313P59037 77 aa14.09□□□□□ -0.15
DNMT3A-206ENST00000406659 OXTP01178 125 aa14.07□□□□□ -0.16
DNMT3A-206ENST00000406659 SPAG11AQ6PDA7 123 aa14.06□□□□□ -0.16
DNMT3A-206ENST00000406659 RPS29P62273 56 aaKnown RBP14.01□□□□□ -0.17
DNMT3A-206ENST00000406659 FAM229AH3BQW9 127 aa13.99□□□□□ -0.17
DNMT3A-206ENST00000406659 FAT1Q14517 4588 aa13.97□□□□□ -0.17
DNMT3A-206ENST00000406659 RYR3Q15413 4870 aa13.94□□□□□ -0.18
DNMT3A-206ENST00000406659 PRR4Q16378 134 aa13.91□□□□□ -0.18
DNMT3A-206ENST00000406659 Q8N9P0 234 aaPredicted RBP13.91□□□□□ -0.18
DNMT3A-206ENST00000406659 SPANXA2-OT1Q8N9U9 137 aa13.91□□□□□ -0.18
DNMT3A-206ENST00000406659 CYP4F30PQ9H0H9 118 aa13.9□□□□□ -0.18
DNMT3A-206ENST00000406659 Q5W150 140 aa13.89□□□□□ -0.19
DNMT3A-206ENST00000406659 KRTAP16-1A8MUX0 517 aa13.88□□□□□ -0.19
DNMT3A-206ENST00000406659 PCOTHQ58A44 107 aa13.86□□□□□ -0.19
DNMT3A-206ENST00000406659 KRTAP13-3Q3SY46 172 aa13.86□□□□□ -0.19
DNMT3A-206ENST00000406659 LOC101927531A0A1B0GV80 90 aa13.84□□□□□ -0.19
DNMT3A-206ENST00000406659 PKHD1L1Q86WI1 4243 aa13.83□□□□□ -0.2
DNMT3A-206ENST00000406659 SMIM26A0A096LP01 95 aa13.83□□□□□ -0.2
DNMT3A-206ENST00000406659 Q5VSD8 79 aa13.83□□□□□ -0.2
DNMT3A-206ENST00000406659 IGLV7-46A0A075B6I9 117 aa13.78□□□□□ -0.2
DNMT3A-206ENST00000406659 RETNLBQ9BQ08 111 aa13.76□□□□□ -0.21
DNMT3A-206ENST00000406659 HSPG2P98160 4391 aa13.7□□□□□ -0.22
DNMT3A-206ENST00000406659 FP248Q71RG6 208 aaPredicted RBP13.69□□□□□ -0.22
DNMT3A-206ENST00000406659 KRTAP10-8P60410 259 aa13.65□□□□□ -0.22
DNMT3A-206ENST00000406659 IGKV2-30P06310 120 aa13.63□□□□□ -0.23
DNMT3A-206ENST00000406659 C4orf26Q17RF5 130 aa13.63□□□□□ -0.23
DNMT3A-206ENST00000406659 Q8N1X5 172 aa13.63□□□□□ -0.23
DNMT3A-206ENST00000406659 RYR1P21817 5038 aa13.6□□□□□ -0.23
DNMT3A-206ENST00000406659 C9orf92A6NGG3 77 aa13.6□□□□□ -0.23
DNMT3A-206ENST00000406659 MPLKIPQ8TAP9 179 aa13.57□□□□□ -0.24
DNMT3A-206ENST00000406659 KRTAP17-1Q9BYP8 105 aa13.56□□□□□ -0.24
DNMT3A-206ENST00000406659 COA5Q86WW8 74 aa13.55□□□□□ -0.24
DNMT3A-206ENST00000406659 FLG2Q5D862 2391 aaPredicted RBP13.54□□□□□ -0.24
DNMT3A-206ENST00000406659 IGKV2D-30A0A075B6S6 120 aa13.53□□□□□ -0.24
DNMT3A-206ENST00000406659 HRES1P13985 223 aa13.53□□□□□ -0.24
DNMT3A-206ENST00000406659 C20orf166-AS1Q96NR2 134 aa13.49□□□□□ -0.25
DNMT3A-206ENST00000406659 A8MUU9 505 aa13.48□□□□□ -0.25
DNMT3A-206ENST00000406659 TNXBP22105 4242 aa13.47□□□□□ -0.25
DNMT3A-206ENST00000406659 EPPK1P58107 5090 aaKnown RBP13.45□□□□□ -0.26
DNMT3A-206ENST00000406659 LRP1Q07954 4544 aaKnown RBP13.45□□□□□ -0.26
DNMT3A-206ENST00000406659 Q1T7F1 81 aa13.44□□□□□ -0.26
DNMT3A-206ENST00000406659 ACYP2P14621 99 aa13.4□□□□□ -0.26
DNMT3A-206ENST00000406659 C7orf65Q6ZTY9 151 aa13.39□□□□□ -0.27
DNMT3A-206ENST00000406659 KIAA1109Q2LD37 5005 aa13.39□□□□□ -0.27
DNMT3A-206ENST00000406659 DMAC1Q96GE9 116 aa13.37□□□□□ -0.27
DNMT3A-206ENST00000406659 V9GYY9 64 aa13.37□□□□□ -0.27
DNMT3A-206ENST00000406659 FAT3Q8TDW7 4589 aa13.36□□□□□ -0.27
DNMT3A-206ENST00000406659 MT1HL1P0DM35 61 aa13.32□□□□□ -0.28
DNMT3A-206ENST00000406659 Q75L30 129 aa13.31□□□□□ -0.28
DNMT3A-206ENST00000406659 DMBT1Q9UGM3 2413 aaPredicted RBP13.28□□□□□ -0.28
DNMT3A-206ENST00000406659 PSPHP1O15172 72 aa13.24□□□□□ -0.29
DNMT3A-206ENST00000406659 CHKB-CPT1BH3BT56 60 aa13.23□□□□□ -0.29
DNMT3A-206ENST00000406659 A8MUN3 132 aa13.18□□□□□ -0.3
DNMT3A-206ENST00000406659 SPINK7P58062 85 aa13.15□□□□□ -0.3
DNMT3A-206ENST00000406659 ATP11AUNQ6ZP68 121 aa13.14□□□□□ -0.31
DNMT3A-206ENST00000406659 PRR15LQ9BU68 103 aa13.14□□□□□ -0.31
DNMT3A-206ENST00000406659 MYCBP2O75592 4640 aa13.13□□□□□ -0.31
DNMT3A-206ENST00000406659 LINC01558Q9Y6Z2 57 aa13.12□□□□□ -0.31
DNMT3A-206ENST00000406659 KRTAP4-5Q9BYR2 181 aa13.1□□□□□ -0.31
DNMT3A-206ENST00000406659 RPL37P61927 97 aaKnown RBP13.09□□□□□ -0.31
DNMT3A-206ENST00000406659 XP32Q5T750 250 aa13.09□□□□□ -0.31
DNMT3A-206ENST00000406659 Q5VV11 94 aa13.07□□□□□ -0.32
DNMT3A-206ENST00000406659 BIRC6Q9NR09 4857 aa13.04□□□□□ -0.32
DNMT3A-206ENST00000406659 BRK1Q8WUW1 75 aa13.02□□□□□ -0.32
DNMT3A-206ENST00000406659 PRO0628Q9UI54 55 aa12.92□□□□□ -0.34
DNMT3A-206ENST00000406659 KRTAP3-1Q9BYR8 98 aa12.91□□□□□ -0.34
DNMT3A-206ENST00000406659 TPRXLQ17RH7 258 aa12.89□□□□□ -0.35
DNMT3A-206ENST00000406659 LCE2DQ5TA82 110 aaPredicted RBP12.89□□□□□ -0.35
DNMT3A-206ENST00000406659 COX6B2Q6YFQ2 88 aa12.88□□□□□ -0.35
DNMT3A-206ENST00000406659 SPTSSBQ8NFR3 76 aa12.84□□□□□ -0.35
DNMT3A-206ENST00000406659 A6NED7 52 aa12.82□□□□□ -0.36
DNMT3A-206ENST00000406659 SVIPQ8NHG7 77 aa12.82□□□□□ -0.36
DNMT3A-206ENST00000406659 HERC2O95714 4834 aa12.82□□□□□ -0.36
DNMT3A-206ENST00000406659 A0A1B0GU69 56 aa12.81□□□□□ -0.36
DNMT3A-206ENST00000406659 J3QL48 77 aa12.79□□□□□ -0.36
DNMT3A-206ENST00000406659 ABCA13Q86UQ4 5058 aa12.68□□□□□ -0.38
DNMT3A-206ENST00000406659 A8MU10 97 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms