RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 IMUPQ9GZP8 106 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 FAM236AA0A1B0GUQ0 79 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 FAM236BA0A1B0GV22 79 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 IGHV6-1A0A0B4J1U7 121 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 A8MWP4 228 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 J3KT08 172 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 NDUFB1O75438 58 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 KRTAP10-8P60410 259 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 C1orf195Q5TG92 126 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 RETNLBQ9BQ08 111 aa2.12□□□□□ -2.07
RTN4-208ENST00000404909 OXTP01178 125 aa2.11□□□□□ -2.07
RTN4-208ENST00000404909 WFDC13Q8IUB5 93 aa2.11□□□□□ -2.07
RTN4-208ENST00000404909 PRR15Q8IV56 129 aa2.11□□□□□ -2.07
RTN4-208ENST00000404909 ASB16-AS1Q495Z4 193 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 MT1HL1P0DM35 61 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 RPS29P62273 56 aaKnown RBP2.1□□□□□ -2.07
RTN4-208ENST00000404909 A0A1B0GVX0 72 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 HCG22E2RYF7 251 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 NDUFS5O43920 106 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 PRO0628Q9UI54 55 aa2.1□□□□□ -2.07
RTN4-208ENST00000404909 NOTCH2NLQ7Z3S9 236 aa2.09□□□□□ -2.07
RTN4-208ENST00000404909 PCLOQ9Y6V0 5065 aa2.09□□□□□ -2.07
RTN4-208ENST00000404909 CASC2Q6XLA1 102 aa2.09□□□□□ -2.08
RTN4-208ENST00000404909 C8orf17Q9NRJ1 99 aa2.09□□□□□ -2.08
RTN4-208ENST00000404909 hDV103S1A0JD37 113 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 MMP24-AS1A0A0U1RRL7 71 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 LINC00313P59037 77 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 ANAPC13Q9BS18 74 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 C9orf92A6NGG3 77 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 KRTAP29-1A8MX34 341 aaPredicted RBP2.08□□□□□ -2.08
RTN4-208ENST00000404909 XP32Q5T750 250 aa2.08□□□□□ -2.08
RTN4-208ENST00000404909 ATOX1O00244 68 aa2.07□□□□□ -2.08
RTN4-208ENST00000404909 SEC61GP60059 68 aa2.07□□□□□ -2.08
RTN4-208ENST00000404909 FAM236DA0A1B0GTK5 79 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 CCDC179H3BU77 68 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 FAM236CP0DP71 79 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 C8orf87E5RJ46 101 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 MRPL34Q9BQ48 92 aaKnown RBP2.06□□□□□ -2.08
RTN4-208ENST00000404909 HERC1Q15751 4861 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 IGLV7-46A0A075B6I9 117 aa2.06□□□□□ -2.08
RTN4-208ENST00000404909 TMEM254Q8TBM7 123 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 LOC100996750A0A140TA64 210 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 SMIM20Q8N5G0 67 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 SERP2Q8N6R1 65 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 KRTAP4-6Q9BYQ5 205 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 OCR1Q9BZK8 76 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 COX6B2Q6YFQ2 88 aa2.05□□□□□ -2.08
RTN4-208ENST00000404909 TRAV7A0A075B6U4 112 aa2.04□□□□□ -2.08
RTN4-208ENST00000404909 FP248Q71RG6 208 aaPredicted RBP2.04□□□□□ -2.08
RTN4-208ENST00000404909 LPAP08519 4548 aa2.04□□□□□ -2.08
RTN4-208ENST00000404909 KRTAP16-1A8MUX0 517 aa2.04□□□□□ -2.08
RTN4-208ENST00000404909 COX7CP15954 63 aa2.04□□□□□ -2.08
RTN4-208ENST00000404909 C20orf197Q8N268 126 aa2.03□□□□□ -2.08
RTN4-208ENST00000404909 UQCRQO14949 82 aa2.03□□□□□ -2.08
RTN4-208ENST00000404909 TP53AIP1Q9HCN2 124 aa2.03□□□□□ -2.08
RTN4-208ENST00000404909 A0A0U1RQV1 116 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 Q8N9P0 234 aaPredicted RBP2.02□□□□□ -2.09
RTN4-208ENST00000404909 SNURFQ9Y675 71 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 LRP2P98164 4655 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 MP68P56378 58 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 TRAV22A0A0B4J277 110 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 H0Y9P7 68 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 TMEM258P61165 79 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 KRTAP13-3Q3SY46 172 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 Q5W150 140 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 LINC00208Q96KT6 92 aa2.02□□□□□ -2.09
RTN4-208ENST00000404909 LCE2AQ5TA79 106 aaPredicted RBP2.01□□□□□ -2.09
RTN4-208ENST00000404909 A8MUU9 505 aa2□□□□□ -2.09
RTN4-208ENST00000404909 C1orf64Q8NEQ6 169 aa2□□□□□ -2.09
RTN4-208ENST00000404909 C20orf166-AS1Q96NR2 134 aa2□□□□□ -2.09
RTN4-208ENST00000404909 CYSTM1Q9H1C7 97 aa2□□□□□ -2.09
RTN4-208ENST00000404909 TPRXLQ17RH7 258 aa2□□□□□ -2.09
RTN4-208ENST00000404909 ATP11AUNQ6ZP68 121 aa2□□□□□ -2.09
RTN4-208ENST00000404909 IGKV2D-30A0A075B6S6 120 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 IGKV2-30P06310 120 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 Q75L30 129 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 ZCCHC13Q8WW36 166 aaKnown RBP1.99□□□□□ -2.09
RTN4-208ENST00000404909 HMCN2Q8NDA2 5059 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 C4orf26Q17RF5 130 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 KLKP1Q107X0 134 aa1.99□□□□□ -2.09
RTN4-208ENST00000404909 RPL37P61927 97 aaKnown RBP1.98□□□□□ -2.09
RTN4-208ENST00000404909 PCOTHQ58A44 107 aa1.98□□□□□ -2.09
RTN4-208ENST00000404909 H3BPC8 53 aa1.98□□□□□ -2.09
RTN4-208ENST00000404909 M0R2T5 61 aa1.98□□□□□ -2.09
RTN4-208ENST00000404909 LOC101927531A0A1B0GV80 90 aa1.98□□□□□ -2.09
RTN4-208ENST00000404909 H7BZZ5 65 aa1.97□□□□□ -2.09
RTN4-208ENST00000404909 CYP4F30PQ9H0H9 118 aa1.97□□□□□ -2.09
RTN4-208ENST00000404909 V9GYY9 64 aa1.97□□□□□ -2.09
RTN4-208ENST00000404909 MUC2Q02817 5179 aa1.96□□□□□ -2.1
RTN4-208ENST00000404909 NDUFC1O43677 76 aa1.96□□□□□ -2.1
RTN4-208ENST00000404909 SPINK7P58062 85 aa1.96□□□□□ -2.1
RTN4-208ENST00000404909 C7orf65Q6ZTY9 151 aa1.96□□□□□ -2.1
RTN4-208ENST00000404909 LCE2CQ5TA81 110 aa1.96□□□□□ -2.1
RTN4-208ENST00000404909 CHKB-CPT1BH3BT56 60 aa1.95□□□□□ -2.1
RTN4-208ENST00000404909 SERP1Q9Y6X1 66 aa1.95□□□□□ -2.1
RTN4-208ENST00000404909 UBR4Q5T4S7 5183 aa1.95□□□□□ -2.1
RTN4-208ENST00000404909 SEC61BP60468 96 aaKnown RBP1.94□□□□□ -2.1
RTN4-208ENST00000404909 HRES1P13985 223 aa1.94□□□□□ -2.1
RTN4-208ENST00000404909 ATP5EP56381 51 aaPredicted RBP1.93□□□□□ -2.1
RTN4-208ENST00000404909 RBM12B-AS1Q9P1G2 102 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms