RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 USP24Q9UPU5 2620 aa5.52□□□□□ -1.53
SMAD9-203ENST00000399275 TEX15Q9BXT5 2789 aa5.51□□□□□ -1.53
SMAD9-203ENST00000399275 SMR3BP02814 79 aaPredicted RBP5.5□□□□□ -1.53
SMAD9-203ENST00000399275 CFAP46Q8IYW2 2715 aa5.49□□□□□ -1.53
SMAD9-203ENST00000399275 BSNQ9UPA5 3926 aa5.48□□□□□ -1.53
SMAD9-203ENST00000399275 SVEP1Q4LDE5 3571 aa5.47□□□□□ -1.53
SMAD9-203ENST00000399275 FLNCQ14315 2725 aa5.46□□□□□ -1.54
SMAD9-203ENST00000399275 ITPR1Q14643 2758 aa5.45□□□□□ -1.54
SMAD9-203ENST00000399275 UTP20O75691 2785 aaKnown RBP5.45□□□□□ -1.54
SMAD9-203ENST00000399275 GCN1Q92616 2671 aaKnown RBP5.45□□□□□ -1.54
SMAD9-203ENST00000399275 DCHS2Q6V1P9 2916 aa5.44□□□□□ -1.54
SMAD9-203ENST00000399275 KRTAP13-1Q8IUC0 172 aa5.44□□□□□ -1.54
SMAD9-203ENST00000399275 ATRQ13535 2644 aa5.43□□□□□ -1.54
SMAD9-203ENST00000399275 NBEAL2Q6ZNJ1 2754 aa5.41□□□□□ -1.54
SMAD9-203ENST00000399275 M0R2T5 61 aa5.39□□□□□ -1.55
SMAD9-203ENST00000399275 SETXQ7Z333 2677 aaKnown RBP5.38□□□□□ -1.55
SMAD9-203ENST00000399275 HELZ2Q9BYK8 2649 aaKnown RBP5.38□□□□□ -1.55
SMAD9-203ENST00000399275 TNP1P09430 55 aa5.38□□□□□ -1.55
SMAD9-203ENST00000399275 ASH1LQ9NR48 2969 aaKnown RBP5.37□□□□□ -1.55
SMAD9-203ENST00000399275 ZANQ9Y493 2812 aa5.36□□□□□ -1.55
SMAD9-203ENST00000399275 STAB2Q8WWQ8 2551 aa5.36□□□□□ -1.55
SMAD9-203ENST00000399275 CRYBG3Q68DQ2 2970 aa5.35□□□□□ -1.55
SMAD9-203ENST00000399275 H0YAA0 97 aa5.34□□□□□ -1.55
SMAD9-203ENST00000399275 Q6ZRN7 208 aaPredicted RBP5.32□□□□□ -1.56
SMAD9-203ENST00000399275 RPS29P62273 56 aaKnown RBP5.31□□□□□ -1.56
SMAD9-203ENST00000399275 UNC79Q9P2D8 2635 aa5.31□□□□□ -1.56
SMAD9-203ENST00000399275 KRTAP10-8P60410 259 aa5.31□□□□□ -1.56
SMAD9-203ENST00000399275 APCP25054 2843 aa5.3□□□□□ -1.56
SMAD9-203ENST00000399275 CELSR1Q9NYQ6 3014 aa5.3□□□□□ -1.56
SMAD9-203ENST00000399275 FLNBO75369 2602 aaKnown RBP5.28□□□□□ -1.56
SMAD9-203ENST00000399275 FBN2P35556 2912 aa5.28□□□□□ -1.56
SMAD9-203ENST00000399275 CELSR2Q9HCU4 2923 aa5.28□□□□□ -1.56
SMAD9-203ENST00000399275 MAST4O15021 2626 aa5.27□□□□□ -1.57
SMAD9-203ENST00000399275 TEP1Q99973 2627 aaKnown RBP5.26□□□□□ -1.57
SMAD9-203ENST00000399275 KRTAP10-1P60331 282 aa5.26□□□□□ -1.57
SMAD9-203ENST00000399275 UBR5O95071 2799 aaPredicted RBP5.25□□□□□ -1.57
SMAD9-203ENST00000399275 NBEAL1Q6ZS30 2694 aa5.25□□□□□ -1.57
SMAD9-203ENST00000399275 KRTAP10-2P60368 255 aa5.24□□□□□ -1.57
SMAD9-203ENST00000399275 KRTAP13-2Q52LG2 175 aa5.23□□□□□ -1.57
SMAD9-203ENST00000399275 ZFHX3Q15911 3703 aa5.22□□□□□ -1.57
SMAD9-203ENST00000399275 MGAM2Q2M2H8 2515 aa5.22□□□□□ -1.57
SMAD9-203ENST00000399275 VPS13CQ709C8 3753 aa5.21□□□□□ -1.57
SMAD9-203ENST00000399275 MXRA5Q9NR99 2828 aa5.21□□□□□ -1.57
SMAD9-203ENST00000399275 CSMD2Q7Z408 3487 aa5.2□□□□□ -1.58
SMAD9-203ENST00000399275 ITPR2Q14571 2701 aa5.18□□□□□ -1.58
SMAD9-203ENST00000399275 NF1P21359 2839 aa5.17□□□□□ -1.58
SMAD9-203ENST00000399275 NBPF19A0A087WUL8 3843 aa5.17□□□□□ -1.58
SMAD9-203ENST00000399275 ANK3Q12955 4377 aaKnown RBP5.15□□□□□ -1.59
SMAD9-203ENST00000399275 NOTCH1P46531 2555 aa5.14□□□□□ -1.59
SMAD9-203ENST00000399275 KRTAP13-3Q3SY46 172 aa5.13□□□□□ -1.59
SMAD9-203ENST00000399275 CUBNO60494 3623 aa5.13□□□□□ -1.59
SMAD9-203ENST00000399275 HIVEP1P15822 2718 aa5.12□□□□□ -1.59
SMAD9-203ENST00000399275 STAB1Q9NY15 2570 aa5.12□□□□□ -1.59
SMAD9-203ENST00000399275 COL6A5A8TX70 2615 aa5.09□□□□□ -1.59
SMAD9-203ENST00000399275 BAHCC1Q9P281 2608 aa5.08□□□□□ -1.6
SMAD9-203ENST00000399275 NSD1Q96L73 2696 aaPredicted RBP5.08□□□□□ -1.6
SMAD9-203ENST00000399275 TPRXLQ17RH7 258 aa5.06□□□□□ -1.6
SMAD9-203ENST00000399275 INE1O15225 51 aa5.05□□□□□ -1.6
SMAD9-203ENST00000399275 PDZD2O15018 2839 aa5.05□□□□□ -1.6
SMAD9-203ENST00000399275 TENM4Q6N022 2769 aa5.04□□□□□ -1.6
SMAD9-203ENST00000399275 KMT2BQ9UMN6 2715 aaPredicted RBP5.02□□□□□ -1.61
SMAD9-203ENST00000399275 PRO2289Q9P1D8 64 aa5.02□□□□□ -1.61
SMAD9-203ENST00000399275 AKAP9Q99996 3911 aa5.02□□□□□ -1.61
SMAD9-203ENST00000399275 NIPBLQ6KC79 2804 aaeCLIP5.02□□□□□ -1.61
SMAD9-203ENST00000399275 KRTAP1-4P0C5Y4 121 aa5.01□□□□□ -1.61
SMAD9-203ENST00000399275 Q5VSD8 79 aa5□□□□□ -1.61
SMAD9-203ENST00000399275 KRTAP15-1Q3LI76 137 aa4.97□□□□□ -1.61
SMAD9-203ENST00000399275 ZNF469Q96JG9 3925 aaPredicted RBP4.94□□□□□ -1.62
SMAD9-203ENST00000399275 TENM1Q9UKZ4 2725 aa4.93□□□□□ -1.62
SMAD9-203ENST00000399275 VWFP04275 2813 aa4.91□□□□□ -1.62
SMAD9-203ENST00000399275 TENM3Q9P273 2699 aa4.91□□□□□ -1.62
SMAD9-203ENST00000399275 TRRAPQ9Y4A5 3859 aa4.91□□□□□ -1.62
SMAD9-203ENST00000399275 OTOGQ6ZRI0 2925 aa4.89□□□□□ -1.63
SMAD9-203ENST00000399275 KRTAP12-2P59991 146 aa4.88□□□□□ -1.63
SMAD9-203ENST00000399275 KRTAP23-1A1A580 65 aa4.85□□□□□ -1.63
SMAD9-203ENST00000399275 LCE2DQ5TA82 110 aaPredicted RBP4.83□□□□□ -1.64
SMAD9-203ENST00000399275 KRTAP13-4Q3LI77 160 aa4.82□□□□□ -1.64
SMAD9-203ENST00000399275 XP32Q5T750 250 aa4.81□□□□□ -1.64
SMAD9-203ENST00000399275 HUWE1Q7Z6Z7 4374 aaKnown RBP4.78□□□□□ -1.64
SMAD9-203ENST00000399275 FBN1P35555 2871 aaKnown RBP4.77□□□□□ -1.65
SMAD9-203ENST00000399275 KRTAP12-1P59990 96 aa4.77□□□□□ -1.65
SMAD9-203ENST00000399275 KRTAP21-3Q3LHN1 58 aa4.75□□□□□ -1.65
SMAD9-203ENST00000399275 PKD1L1Q8TDX9 2849 aa4.74□□□□□ -1.65
SMAD9-203ENST00000399275 KRTAP3-1Q9BYR8 98 aa4.74□□□□□ -1.65
SMAD9-203ENST00000399275 TGP01266 2768 aa4.67□□□□□ -1.66
SMAD9-203ENST00000399275 KRTAP10-6P60371 365 aaPredicted RBP4.64□□□□□ -1.67
SMAD9-203ENST00000399275 A0A1B0GVY2 172 aa4.6□□□□□ -1.67
SMAD9-203ENST00000399275 CSMD3Q7Z407 3707 aa4.6□□□□□ -1.67
SMAD9-203ENST00000399275 DNAH10Q8IVF4 4471 aa4.57□□□□□ -1.68
SMAD9-203ENST00000399275 DNAH9Q9NYC9 4486 aa4.56□□□□□ -1.68
SMAD9-203ENST00000399275 TENM2Q9NT68 2774 aa4.55□□□□□ -1.68
SMAD9-203ENST00000399275 SRRM2Q9UQ35 2752 aaKnown RBP4.54□□□□□ -1.68
SMAD9-203ENST00000399275 CMYA5Q8N3K9 4069 aa4.53□□□□□ -1.68
SMAD9-203ENST00000399275 KRTAP3-2Q9BYR7 98 aa4.5□□□□□ -1.69
SMAD9-203ENST00000399275 DNAH1Q9P2D7 4330 aa4.49□□□□□ -1.69
SMAD9-203ENST00000399275 PLECQ15149 4684 aaKnown RBP4.49□□□□□ -1.69
SMAD9-203ENST00000399275 KRTAP10-10P60014 251 aa4.48□□□□□ -1.69
SMAD9-203ENST00000399275 KRTAP17-1Q9BYP8 105 aa4.48□□□□□ -1.69
SMAD9-203ENST00000399275 KRTAP3-3Q9BYR6 98 aa4.47□□□□□ -1.69
SMAD9-203ENST00000399275 ANK2Q01484 3957 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms