RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 KRTAP4-16G5E9R7 235 aaPredicted RBP5.9□□□□□ -1.47
COL4A4-201ENST00000396625 NOTCH2NLQ7Z3S9 236 aa5.9□□□□□ -1.47
COL4A4-201ENST00000396625 PRUNE2Q8WUY3 3088 aa5.89□□□□□ -1.47
COL4A4-201ENST00000396625 PP632Q6XCG6 107 aa5.89□□□□□ -1.47
COL4A4-201ENST00000396625 RPS29P62273 56 aaKnown RBP5.88□□□□□ -1.47
COL4A4-201ENST00000396625 KRTAP11-1Q8IUC1 163 aa5.84□□□□□ -1.47
COL4A4-201ENST00000396625 DMXL2Q8TDJ6 3036 aa5.84□□□□□ -1.47
COL4A4-201ENST00000396625 LAMA3Q16787 3333 aa5.84□□□□□ -1.47
COL4A4-201ENST00000396625 CELSR3Q9NYQ7 3312 aa5.84□□□□□ -1.47
COL4A4-201ENST00000396625 BRCA2P51587 3418 aa5.84□□□□□ -1.47
COL4A4-201ENST00000396625 DNAH14Q0VDD8 3507 aa5.8□□□□□ -1.48
COL4A4-201ENST00000396625 TNRC18O15417 2968 aaPredicted RBP5.79□□□□□ -1.48
COL4A4-201ENST00000396625 LAMA1P25391 3075 aa5.78□□□□□ -1.48
COL4A4-201ENST00000396625 ZANQ9Y493 2812 aa5.78□□□□□ -1.48
COL4A4-201ENST00000396625 REV3LO60673 3130 aa5.78□□□□□ -1.48
COL4A4-201ENST00000396625 ZZEF1O43149 2961 aa5.76□□□□□ -1.49
COL4A4-201ENST00000396625 COL6A3P12111 3177 aa5.68□□□□□ -1.5
COL4A4-201ENST00000396625 BOD1L1Q8NFC6 3051 aa5.68□□□□□ -1.5
COL4A4-201ENST00000396625 P0C880 135 aa5.68□□□□□ -1.5
COL4A4-201ENST00000396625 KRTAP10-8P60410 259 aa5.68□□□□□ -1.5
COL4A4-201ENST00000396625 CDH23Q9H251 3354 aa5.67□□□□□ -1.5
COL4A4-201ENST00000396625 VWFP04275 2813 aa5.67□□□□□ -1.5
COL4A4-201ENST00000396625 Q6ZRN7 208 aaPredicted RBP5.66□□□□□ -1.5
COL4A4-201ENST00000396625 UNC80Q8N2C7 3258 aa5.66□□□□□ -1.5
COL4A4-201ENST00000396625 DCHS2Q6V1P9 2916 aa5.66□□□□□ -1.5
COL4A4-201ENST00000396625 KRTAP13-2Q52LG2 175 aa5.64□□□□□ -1.51
COL4A4-201ENST00000396625 H0YAA0 97 aa5.62□□□□□ -1.51
COL4A4-201ENST00000396625 USP34Q70CQ2 3546 aa5.62□□□□□ -1.51
COL4A4-201ENST00000396625 SPTBN5Q9NRC6 3674 aaKnown RBP5.62□□□□□ -1.51
COL4A4-201ENST00000396625 MXRA5Q9NR99 2828 aa5.61□□□□□ -1.51
COL4A4-201ENST00000396625 CELSR1Q9NYQ6 3014 aa5.61□□□□□ -1.51
COL4A4-201ENST00000396625 ADGRG4Q8IZF6 3080 aa5.6□□□□□ -1.51
COL4A4-201ENST00000396625 VCANP13611 3396 aa5.6□□□□□ -1.51
COL4A4-201ENST00000396625 HRNRQ86YZ3 2850 aaPredicted RBP5.6□□□□□ -1.51
COL4A4-201ENST00000396625 ATMQ13315 3056 aa5.59□□□□□ -1.51
COL4A4-201ENST00000396625 FBN2P35556 2912 aa5.57□□□□□ -1.52
COL4A4-201ENST00000396625 DMXL1Q9Y485 3027 aa5.56□□□□□ -1.52
COL4A4-201ENST00000396625 KRTAP13-1Q8IUC0 172 aa5.55□□□□□ -1.52
COL4A4-201ENST00000396625 PKD1L1Q8TDX9 2849 aa5.55□□□□□ -1.52
COL4A4-201ENST00000396625 KRTAP7-1Q8IUC3 87 aa5.53□□□□□ -1.52
COL4A4-201ENST00000396625 PRO2289Q9P1D8 64 aa5.53□□□□□ -1.52
COL4A4-201ENST00000396625 TENM4Q6N022 2769 aa5.51□□□□□ -1.53
COL4A4-201ENST00000396625 CFAP47Q6ZTR5 3102 aa5.49□□□□□ -1.53
COL4A4-201ENST00000396625 A0A1B0GVY2 172 aa5.47□□□□□ -1.53
COL4A4-201ENST00000396625 SZT2Q5T011 3432 aa5.47□□□□□ -1.53
COL4A4-201ENST00000396625 TENM2Q9NT68 2774 aa5.47□□□□□ -1.53
COL4A4-201ENST00000396625 XP32Q5T750 250 aa5.42□□□□□ -1.54
COL4A4-201ENST00000396625 KRTAP10-10P60014 251 aa5.39□□□□□ -1.55
COL4A4-201ENST00000396625 SPEGQ15772 3267 aa5.39□□□□□ -1.55
COL4A4-201ENST00000396625 ZFHX3Q15911 3703 aa5.38□□□□□ -1.55
COL4A4-201ENST00000396625 WDFY3Q8IZQ1 3526 aa5.37□□□□□ -1.55
COL4A4-201ENST00000396625 COL7A1Q02388 2944 aa5.36□□□□□ -1.55
COL4A4-201ENST00000396625 EYSQ5T1H1 3165 aa5.31□□□□□ -1.56
COL4A4-201ENST00000396625 KRTAP21-3Q3LHN1 58 aa5.3□□□□□ -1.56
COL4A4-201ENST00000396625 TPRXLQ17RH7 258 aa5.29□□□□□ -1.56
COL4A4-201ENST00000396625 MYO15AQ9UKN7 3530 aa5.29□□□□□ -1.56
COL4A4-201ENST00000396625 KRTAP12-2P59991 146 aa5.28□□□□□ -1.56
COL4A4-201ENST00000396625 DMDP11532 3685 aa5.26□□□□□ -1.57
COL4A4-201ENST00000396625 INE1O15225 51 aa5.25□□□□□ -1.57
COL4A4-201ENST00000396625 ZFHX4Q86UP3 3567 aa5.24□□□□□ -1.57
COL4A4-201ENST00000396625 KRTAP1-4P0C5Y4 121 aa5.22□□□□□ -1.57
COL4A4-201ENST00000396625 KRTAP13-4Q3LI77 160 aa5.22□□□□□ -1.57
COL4A4-201ENST00000396625 MEGF8Q7Z7M0 2845 aa5.22□□□□□ -1.57
COL4A4-201ENST00000396625 NBPF19A0A087WUL8 3843 aa5.21□□□□□ -1.58
COL4A4-201ENST00000396625 LOC400499M0QZD8 3231 aa5.19□□□□□ -1.58
COL4A4-201ENST00000396625 KRTAP13-3Q3SY46 172 aa5.14□□□□□ -1.59
COL4A4-201ENST00000396625 LAMA5O15230 3695 aa5.13□□□□□ -1.59
COL4A4-201ENST00000396625 SMG1Q96Q15 3661 aaKnown RBP5.13□□□□□ -1.59
COL4A4-201ENST00000396625 KRTAP15-1Q3LI76 137 aa5.13□□□□□ -1.59
COL4A4-201ENST00000396625 ASPMQ8IZT6 3477 aa5.1□□□□□ -1.59
COL4A4-201ENST00000396625 SPENQ96T58 3664 aaKnown RBP5.08□□□□□ -1.6
COL4A4-201ENST00000396625 KRTAP12-1P59990 96 aa5.07□□□□□ -1.6
COL4A4-201ENST00000396625 FBN1P35555 2871 aaKnown RBP5.07□□□□□ -1.6
COL4A4-201ENST00000396625 OTOGQ6ZRI0 2925 aa5.06□□□□□ -1.6
COL4A4-201ENST00000396625 CSMD1Q96PZ7 3565 aa5.06□□□□□ -1.6
COL4A4-201ENST00000396625 FBN3Q75N90 2809 aa5.05□□□□□ -1.6
COL4A4-201ENST00000396625 DCHS1Q96JQ0 3298 aa5.03□□□□□ -1.6
COL4A4-201ENST00000396625 RELNP78509 3460 aa5.01□□□□□ -1.61
COL4A4-201ENST00000396625 MUC3AQ02505 3323 aa4.95□□□□□ -1.62
COL4A4-201ENST00000396625 VPS13CQ709C8 3753 aa4.88□□□□□ -1.63
COL4A4-201ENST00000396625 SVEP1Q4LDE5 3571 aa4.84□□□□□ -1.64
COL4A4-201ENST00000396625 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
COL4A4-201ENST00000396625 TRRAPQ9Y4A5 3859 aa4.78□□□□□ -1.64
COL4A4-201ENST00000396625 AKAP9Q99996 3911 aa4.78□□□□□ -1.64
COL4A4-201ENST00000396625 CUBNO60494 3623 aa4.78□□□□□ -1.64
COL4A4-201ENST00000396625 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
COL4A4-201ENST00000396625 KRTAP23-1A1A580 65 aa4.75□□□□□ -1.65
COL4A4-201ENST00000396625 BSNQ9UPA5 3926 aa4.74□□□□□ -1.65
COL4A4-201ENST00000396625 KRTAP3-1Q9BYR8 98 aa4.74□□□□□ -1.65
COL4A4-201ENST00000396625 KRTAP10-6P60371 365 aaPredicted RBP4.72□□□□□ -1.65
COL4A4-201ENST00000396625 CSMD3Q7Z407 3707 aa4.67□□□□□ -1.66
COL4A4-201ENST00000396625 KRTAP12-3P60328 96 aa4.6□□□□□ -1.67
COL4A4-201ENST00000396625 ALMS1Q8TCU4 4167 aa4.59□□□□□ -1.67
COL4A4-201ENST00000396625 KRTAP10-5P60370 271 aa4.54□□□□□ -1.68
COL4A4-201ENST00000396625 KRTAP3-2Q9BYR7 98 aa4.48□□□□□ -1.69
COL4A4-201ENST00000396625 LCE3AQ5TA76 89 aa4.48□□□□□ -1.69
COL4A4-201ENST00000396625 CSMD2Q7Z408 3487 aa4.46□□□□□ -1.7
COL4A4-201ENST00000396625 LYSTQ99698 3801 aa4.45□□□□□ -1.7
COL4A4-201ENST00000396625 KRTAP3-3Q9BYR6 98 aa4.45□□□□□ -1.7
COL4A4-201ENST00000396625 ZNF469Q96JG9 3925 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms