RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 A0A087X002 238 aa12.32□□□□□ -0.44
CLK3-202ENST00000395066 IGLV5-52A0A0A0MRZ9 124 aa12.32□□□□□ -0.44
CLK3-202ENST00000395066 NDUFS5O43920 106 aa12.32□□□□□ -0.44
CLK3-202ENST00000395066 Q6ZR54 194 aa12.32□□□□□ -0.44
CLK3-202ENST00000395066 NOTCH2NLQ7Z3S9 236 aa12.32□□□□□ -0.44
CLK3-202ENST00000395066 MEGF8Q7Z7M0 2845 aa12.3□□□□□ -0.44
CLK3-202ENST00000395066 A6NED7 52 aa12.29□□□□□ -0.44
CLK3-202ENST00000395066 LCA10Q71F78 164 aa12.28□□□□□ -0.44
CLK3-202ENST00000395066 A0A1B0GVX0 72 aa12.27□□□□□ -0.44
CLK3-202ENST00000395066 ZNF861PO60384 105 aa12.25□□□□□ -0.45
CLK3-202ENST00000395066 SPTSSBQ8NFR3 76 aa12.25□□□□□ -0.45
CLK3-202ENST00000395066 SPINK6Q6UWN8 80 aa12.24□□□□□ -0.45
CLK3-202ENST00000395066 DNAH6Q9C0G6 4158 aa12.24□□□□□ -0.45
CLK3-202ENST00000395066 ZNF706Q9Y5V0 76 aaPredicted RBP12.24□□□□□ -0.45
CLK3-202ENST00000395066 SPAG11AQ6PDA7 123 aa12.24□□□□□ -0.45
CLK3-202ENST00000395066 CDK2AP2O75956 126 aa12.23□□□□□ -0.45
CLK3-202ENST00000395066 MRPL34Q9BQ48 92 aaKnown RBP12.23□□□□□ -0.45
CLK3-202ENST00000395066 PLAC8Q9NZF1 115 aa12.23□□□□□ -0.45
CLK3-202ENST00000395066 LINC01558Q9Y6Z2 57 aa12.23□□□□□ -0.45
CLK3-202ENST00000395066 ATP11AUNQ6ZP68 121 aa12.22□□□□□ -0.45
CLK3-202ENST00000395066 HRES1P13985 223 aa12.19□□□□□ -0.46
CLK3-202ENST00000395066 ALMS1Q8TCU4 4167 aa12.18□□□□□ -0.46
CLK3-202ENST00000395066 CIRBP-AS1Q8TBR5 109 aa12.17□□□□□ -0.46
CLK3-202ENST00000395066 CDC42SE1Q9NRR8 79 aa12.17□□□□□ -0.46
CLK3-202ENST00000395066 KTN1-AS1Q86SY8 53 aa12.15□□□□□ -0.46
CLK3-202ENST00000395066 DNAH11Q96DT5 4516 aa12.13□□□□□ -0.47
CLK3-202ENST00000395066 IGLV7-43P04211 117 aa12.11□□□□□ -0.47
CLK3-202ENST00000395066 C1orf134Q5TEV5 83 aa12.1□□□□□ -0.47
CLK3-202ENST00000395066 DNHD1Q96M86 4753 aa12.1□□□□□ -0.47
CLK3-202ENST00000395066 Q5W150 140 aa12.09□□□□□ -0.47
CLK3-202ENST00000395066 DNAH5Q8TE73 4624 aa12.09□□□□□ -0.47
CLK3-202ENST00000395066 A6NN06 94 aa12.09□□□□□ -0.47
CLK3-202ENST00000395066 LY6G6CO95867 125 aa12.07□□□□□ -0.48
CLK3-202ENST00000395066 SPINK7P58062 85 aa12.06□□□□□ -0.48
CLK3-202ENST00000395066 KRTAP10-2P60368 255 aa12.03□□□□□ -0.48
CLK3-202ENST00000395066 KRTAP13-3Q3SY46 172 aa12.01□□□□□ -0.49
CLK3-202ENST00000395066 PRR26Q8N8Z3 221 aa12□□□□□ -0.49
CLK3-202ENST00000395066 RETNLBQ9BQ08 111 aa11.98□□□□□ -0.49
CLK3-202ENST00000395066 LRP1BQ9NZR2 4599 aa11.97□□□□□ -0.49
CLK3-202ENST00000395066 RBM12B-AS1Q9P1G2 102 aa11.94□□□□□ -0.5
CLK3-202ENST00000395066 ACYP2P14621 99 aa11.93□□□□□ -0.5
CLK3-202ENST00000395066 KRTAP13-2Q52LG2 175 aa11.9□□□□□ -0.5
CLK3-202ENST00000395066 C7orf65Q6ZTY9 151 aa11.9□□□□□ -0.5
CLK3-202ENST00000395066 HYDINQ4G0P3 5121 aa11.89□□□□□ -0.51
CLK3-202ENST00000395066 C8orf87E5RJ46 101 aa11.88□□□□□ -0.51
CLK3-202ENST00000395066 SSBP3-AS1Q7Z2R9 100 aa11.88□□□□□ -0.51
CLK3-202ENST00000395066 PKD1P98161 4303 aa11.86□□□□□ -0.51
CLK3-202ENST00000395066 DMAC1Q96GE9 116 aa11.85□□□□□ -0.51
CLK3-202ENST00000395066 LINC00313P59037 77 aa11.84□□□□□ -0.51
CLK3-202ENST00000395066 KRTAP10-1P60331 282 aa11.84□□□□□ -0.51
CLK3-202ENST00000395066 VPS13BQ7Z7G8 4022 aa11.81□□□□□ -0.52
CLK3-202ENST00000395066 FAT2Q9NYQ8 4349 aa11.81□□□□□ -0.52
CLK3-202ENST00000395066 FAM229AH3BQW9 127 aa11.78□□□□□ -0.52
CLK3-202ENST00000395066 IGKV2-30P06310 120 aa11.73□□□□□ -0.53
CLK3-202ENST00000395066 A0A1B0GU69 56 aa11.73□□□□□ -0.53
CLK3-202ENST00000395066 KRTAP1-4P0C5Y4 121 aa11.72□□□□□ -0.53
CLK3-202ENST00000395066 Q6ZSA8 131 aa11.72□□□□□ -0.53
CLK3-202ENST00000395066 KRTAP16-1A8MUX0 517 aa11.7□□□□□ -0.54
CLK3-202ENST00000395066 IGKV2D-30A0A075B6S6 120 aa11.65□□□□□ -0.54
CLK3-202ENST00000395066 PKHD1P08F94 4074 aa11.64□□□□□ -0.55
CLK3-202ENST00000395066 SPATA8Q6RVD6 105 aa11.62□□□□□ -0.55
CLK3-202ENST00000395066 PLA2G1BP04054 148 aaKnown RBP11.61□□□□□ -0.55
CLK3-202ENST00000395066 TYMSOSQ8TAI1 123 aa11.56□□□□□ -0.56
CLK3-202ENST00000395066 PRAC1Q96KF2 57 aa11.56□□□□□ -0.56
CLK3-202ENST00000395066 UQCR11O14957 56 aa11.55□□□□□ -0.56
CLK3-202ENST00000395066 MIR22HGQ0VDD5 57 aa11.55□□□□□ -0.56
CLK3-202ENST00000395066 C4orf48Q5BLP8 95 aa11.55□□□□□ -0.56
CLK3-202ENST00000395066 ADM2Q7Z4H4 148 aa11.52□□□□□ -0.57
CLK3-202ENST00000395066 SPINK1P00995 79 aa11.43□□□□□ -0.58
CLK3-202ENST00000395066 SMR3BP02814 79 aaPredicted RBP11.43□□□□□ -0.58
CLK3-202ENST00000395066 Q8N1X5 172 aa11.42□□□□□ -0.58
CLK3-202ENST00000395066 FAT1Q14517 4588 aa11.39□□□□□ -0.59
CLK3-202ENST00000395066 SACSQ9NZJ4 4579 aa11.39□□□□□ -0.59
CLK3-202ENST00000395066 LINC00304Q8N9R0 145 aa11.38□□□□□ -0.59
CLK3-202ENST00000395066 DYNC1H1Q14204 4646 aaKnown RBP11.36□□□□□ -0.59
CLK3-202ENST00000395066 C9orf92A6NGG3 77 aa11.34□□□□□ -0.59
CLK3-202ENST00000395066 LINC01554Q52M75 96 aa11.3□□□□□ -0.6
CLK3-202ENST00000395066 APOBP04114 4563 aaKnown RBP11.2□□□□□ -0.62
CLK3-202ENST00000395066 CSAG1Q6PB30 78 aa11.2□□□□□ -0.62
CLK3-202ENST00000395066 PKHD1L1Q86WI1 4243 aa11.17□□□□□ -0.62
CLK3-202ENST00000395066 RPS29P62273 56 aaKnown RBP11.15□□□□□ -0.62
CLK3-202ENST00000395066 KRTAP10-4P60372 401 aaPredicted RBP11.1□□□□□ -0.63
CLK3-202ENST00000395066 H0YAA0 97 aa11.1□□□□□ -0.63
CLK3-202ENST00000395066 KRTAP3-1Q9BYR8 98 aa11.1□□□□□ -0.63
CLK3-202ENST00000395066 A8MUU9 505 aa11.09□□□□□ -0.63
CLK3-202ENST00000395066 C20orf166-AS1Q96NR2 134 aa11.08□□□□□ -0.64
CLK3-202ENST00000395066 A0A1B0GVY2 172 aa11.04□□□□□ -0.64
CLK3-202ENST00000395066 A0A1B0GU33 70 aa11□□□□□ -0.65
CLK3-202ENST00000395066 LRP1Q07954 4544 aaKnown RBP10.99□□□□□ -0.65
CLK3-202ENST00000395066 FLG2Q5D862 2391 aaPredicted RBP10.99□□□□□ -0.65
CLK3-202ENST00000395066 KMT2CQ8NEZ4 4911 aaKnown RBP10.96□□□□□ -0.65
CLK3-202ENST00000395066 H1FX-AS1Q4G0G2 97 aa10.95□□□□□ -0.66
CLK3-202ENST00000395066 RYR2Q92736 4967 aa10.94□□□□□ -0.66
CLK3-202ENST00000395066 FAT3Q8TDW7 4589 aa10.87□□□□□ -0.67
CLK3-202ENST00000395066 KRTAP25-1Q3LHN0 102 aa10.85□□□□□ -0.67
CLK3-202ENST00000395066 HSPG2P98160 4391 aa10.84□□□□□ -0.67
CLK3-202ENST00000395066 MYCBP2O75592 4640 aa10.83□□□□□ -0.68
CLK3-202ENST00000395066 TNXBP22105 4242 aa10.83□□□□□ -0.68
CLK3-202ENST00000395066 COX6B2Q6YFQ2 88 aa10.79□□□□□ -0.68
CLK3-202ENST00000395066 DMBT1Q9UGM3 2413 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms