RNA–Protein interactions for RNA: ENST00000380815.4

GMDS-202, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GMDS, Length 1,752 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-202ENST00000380815 SPAG11AQ6PDA7 123 aa12.32□□□□□ -0.44
GMDS-202ENST00000380815 RPS29P62273 56 aaKnown RBP12.3□□□□□ -0.44
GMDS-202ENST00000380815 KLKP1Q107X0 134 aa12.3□□□□□ -0.44
GMDS-202ENST00000380815 CYSTM1Q9H1C7 97 aa12.3□□□□□ -0.44
GMDS-202ENST00000380815 Q5VSD8 79 aa12.3□□□□□ -0.44
GMDS-202ENST00000380815 TMEM254Q8TBM7 123 aa12.28□□□□□ -0.44
GMDS-202ENST00000380815 HSPG2P98160 4391 aa12.27□□□□□ -0.45
GMDS-202ENST00000380815 C5orf47Q569G3 176 aa12.25□□□□□ -0.45
GMDS-202ENST00000380815 NOTCH2NLQ7Z3S9 236 aa12.25□□□□□ -0.45
GMDS-202ENST00000380815 SNURFQ9Y675 71 aa12.24□□□□□ -0.45
GMDS-202ENST00000380815 C8orf87E5RJ46 101 aa12.23□□□□□ -0.45
GMDS-202ENST00000380815 A0A0U1RQV1 116 aa12.22□□□□□ -0.45
GMDS-202ENST00000380815 PKHD1L1Q86WI1 4243 aa12.21□□□□□ -0.46
GMDS-202ENST00000380815 MRPL34Q9BQ48 92 aaKnown RBP12.2□□□□□ -0.46
GMDS-202ENST00000380815 RYR1P21817 5038 aa12.2□□□□□ -0.46
GMDS-202ENST00000380815 TMEM258P61165 79 aa12.18□□□□□ -0.46
GMDS-202ENST00000380815 TP53AIP1Q9HCN2 124 aa12.18□□□□□ -0.46
GMDS-202ENST00000380815 NDUFC1O43677 76 aa12.16□□□□□ -0.46
GMDS-202ENST00000380815 H7BZZ5 65 aa12.15□□□□□ -0.46
GMDS-202ENST00000380815 LINC00313P59037 77 aa12.15□□□□□ -0.46
GMDS-202ENST00000380815 KRTAP17-1Q9BYP8 105 aa12.14□□□□□ -0.47
GMDS-202ENST00000380815 MP68P56378 58 aa12.13□□□□□ -0.47
GMDS-202ENST00000380815 Q8N1X5 172 aa12.12□□□□□ -0.47
GMDS-202ENST00000380815 NDUFS5O43920 106 aa12.1□□□□□ -0.47
GMDS-202ENST00000380815 ZCCHC13Q8WW36 166 aaKnown RBP12.1□□□□□ -0.47
GMDS-202ENST00000380815 H0Y9P7 68 aa12.09□□□□□ -0.47
GMDS-202ENST00000380815 TRAV22A0A0B4J277 110 aa12.08□□□□□ -0.48
GMDS-202ENST00000380815 KIAA1109Q2LD37 5005 aa12.08□□□□□ -0.48
GMDS-202ENST00000380815 H3BPC8 53 aa12.07□□□□□ -0.48
GMDS-202ENST00000380815 KRTAP10-8P60410 259 aa12.07□□□□□ -0.48
GMDS-202ENST00000380815 EPPK1P58107 5090 aaKnown RBP12.07□□□□□ -0.48
GMDS-202ENST00000380815 LINC00208Q96KT6 92 aa12.04□□□□□ -0.48
GMDS-202ENST00000380815 KRTAP16-1A8MUX0 517 aa12.02□□□□□ -0.48
GMDS-202ENST00000380815 Q8N9P0 234 aaPredicted RBP12.02□□□□□ -0.49
GMDS-202ENST00000380815 FAM236DA0A1B0GTK5 79 aa12□□□□□ -0.49
GMDS-202ENST00000380815 FAM236CP0DP71 79 aa12□□□□□ -0.49
GMDS-202ENST00000380815 C1orf64Q8NEQ6 169 aa11.99□□□□□ -0.49
GMDS-202ENST00000380815 LRP1Q07954 4544 aaKnown RBP11.98□□□□□ -0.49
GMDS-202ENST00000380815 FLG2Q5D862 2391 aaPredicted RBP11.97□□□□□ -0.49
GMDS-202ENST00000380815 TNXBP22105 4242 aa11.95□□□□□ -0.5
GMDS-202ENST00000380815 ATP5EP56381 51 aaPredicted RBP11.94□□□□□ -0.5
GMDS-202ENST00000380815 KRTAP13-3Q3SY46 172 aa11.92□□□□□ -0.5
GMDS-202ENST00000380815 Q5W150 140 aa11.92□□□□□ -0.5
GMDS-202ENST00000380815 RETNLBQ9BQ08 111 aa11.91□□□□□ -0.5
GMDS-202ENST00000380815 FAT3Q8TDW7 4589 aa11.88□□□□□ -0.51
GMDS-202ENST00000380815 RPS28P62857 69 aaKnown RBP11.87□□□□□ -0.51
GMDS-202ENST00000380815 MT1HL1P0DM35 61 aa11.86□□□□□ -0.51
GMDS-202ENST00000380815 LOC101927531A0A1B0GV80 90 aa11.83□□□□□ -0.52
GMDS-202ENST00000380815 SERP1Q9Y6X1 66 aa11.8□□□□□ -0.52
GMDS-202ENST00000380815 C9orf92A6NGG3 77 aa11.79□□□□□ -0.52
GMDS-202ENST00000380815 SPANXA2-OT1Q8N9U9 137 aa11.79□□□□□ -0.52
GMDS-202ENST00000380815 OXTP01178 125 aa11.79□□□□□ -0.52
GMDS-202ENST00000380815 DMBT1Q9UGM3 2413 aaPredicted RBP11.79□□□□□ -0.52
GMDS-202ENST00000380815 MYCBP2O75592 4640 aa11.79□□□□□ -0.52
GMDS-202ENST00000380815 FP248Q71RG6 208 aaPredicted RBP11.78□□□□□ -0.52
GMDS-202ENST00000380815 KRTAP4-5Q9BYR2 181 aa11.76□□□□□ -0.53
GMDS-202ENST00000380815 C20orf166-AS1Q96NR2 134 aa11.75□□□□□ -0.53
GMDS-202ENST00000380815 PCOTHQ58A44 107 aa11.74□□□□□ -0.53
GMDS-202ENST00000380815 CYP4F30PQ9H0H9 118 aa11.74□□□□□ -0.53
GMDS-202ENST00000380815 A8MUU9 505 aa11.74□□□□□ -0.53
GMDS-202ENST00000380815 IGLV7-46A0A075B6I9 117 aa11.69□□□□□ -0.54
GMDS-202ENST00000380815 IGKV2-30P06310 120 aa11.69□□□□□ -0.54
GMDS-202ENST00000380815 PRR4Q16378 134 aa11.69□□□□□ -0.54
GMDS-202ENST00000380815 Q75L30 129 aa11.62□□□□□ -0.55
GMDS-202ENST00000380815 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
GMDS-202ENST00000380815 BIRC6Q9NR09 4857 aa11.55□□□□□ -0.56
GMDS-202ENST00000380815 HRES1P13985 223 aa11.55□□□□□ -0.56
GMDS-202ENST00000380815 C7orf65Q6ZTY9 151 aa11.54□□□□□ -0.56
GMDS-202ENST00000380815 SMIM26A0A096LP01 95 aa11.53□□□□□ -0.56
GMDS-202ENST00000380815 XP32Q5T750 250 aa11.49□□□□□ -0.57
GMDS-202ENST00000380815 HERC2O95714 4834 aa11.48□□□□□ -0.57
GMDS-202ENST00000380815 RPL37P61927 97 aaKnown RBP11.46□□□□□ -0.57
GMDS-202ENST00000380815 ABCA13Q86UQ4 5058 aa11.46□□□□□ -0.58
GMDS-202ENST00000380815 ATP11AUNQ6ZP68 121 aa11.44□□□□□ -0.58
GMDS-202ENST00000380815 COA5Q86WW8 74 aa11.43□□□□□ -0.58
GMDS-202ENST00000380815 DMAC1Q96GE9 116 aa11.43□□□□□ -0.58
GMDS-202ENST00000380815 TPRXLQ17RH7 258 aa11.42□□□□□ -0.58
GMDS-202ENST00000380815 J3QL48 77 aa11.41□□□□□ -0.58
GMDS-202ENST00000380815 SPINK7P58062 85 aa11.39□□□□□ -0.59
GMDS-202ENST00000380815 ACYP2P14621 99 aa11.38□□□□□ -0.59
GMDS-202ENST00000380815 MPLKIPQ8TAP9 179 aa11.32□□□□□ -0.6
GMDS-202ENST00000380815 C4orf26Q17RF5 130 aa11.28□□□□□ -0.6
GMDS-202ENST00000380815 A8MUN3 132 aa11.26□□□□□ -0.61
GMDS-202ENST00000380815 Q1T7F1 81 aa11.23□□□□□ -0.61
GMDS-202ENST00000380815 V9GYY9 64 aa11.21□□□□□ -0.61
GMDS-202ENST00000380815 CHKB-CPT1BH3BT56 60 aa11.21□□□□□ -0.62
GMDS-202ENST00000380815 KRTAP3-1Q9BYR8 98 aa11.15□□□□□ -0.62
GMDS-202ENST00000380815 COX6B2Q6YFQ2 88 aa11.13□□□□□ -0.63
GMDS-202ENST00000380815 LRP2P98164 4655 aa11.11□□□□□ -0.63
GMDS-202ENST00000380815 LPAP08519 4548 aa11.11□□□□□ -0.63
GMDS-202ENST00000380815 PSPHP1O15172 72 aa11.05□□□□□ -0.64
GMDS-202ENST00000380815 LINC01558Q9Y6Z2 57 aa11.03□□□□□ -0.64
GMDS-202ENST00000380815 SEC61BP60468 96 aaKnown RBP11.01□□□□□ -0.65
GMDS-202ENST00000380815 PRR15LQ9BU68 103 aa11□□□□□ -0.65
GMDS-202ENST00000380815 PCLOQ9Y6V0 5065 aa10.99□□□□□ -0.65
GMDS-202ENST00000380815 SPTSSBQ8NFR3 76 aa10.93□□□□□ -0.66
GMDS-202ENST00000380815 Q5VV11 94 aa10.92□□□□□ -0.66
GMDS-202ENST00000380815 RBM12B-AS1Q9P1G2 102 aa10.85□□□□□ -0.67
GMDS-202ENST00000380815 A0A1B0GU69 56 aa10.8□□□□□ -0.68
GMDS-202ENST00000380815 H1FX-AS1Q4G0G2 97 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms