RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 A6NED7 52 aa7.94□□□□□ -1.14
CCDC3-202ENST00000378839 IGLV7-43P04211 117 aa7.93□□□□□ -1.14
CCDC3-202ENST00000378839 CIRBP-AS1Q8TBR5 109 aa7.93□□□□□ -1.14
CCDC3-202ENST00000378839 Q1T7F1 81 aa7.93□□□□□ -1.14
CCDC3-202ENST00000378839 MP68P56378 58 aa7.92□□□□□ -1.14
CCDC3-202ENST00000378839 PCOTHQ58A44 107 aa7.92□□□□□ -1.14
CCDC3-202ENST00000378839 ZNF706Q9Y5V0 76 aaPredicted RBP7.92□□□□□ -1.14
CCDC3-202ENST00000378839 A0A087X002 238 aa7.91□□□□□ -1.14
CCDC3-202ENST00000378839 ASB16-AS1Q495Z4 193 aa7.91□□□□□ -1.14
CCDC3-202ENST00000378839 Q5VV11 94 aa7.91□□□□□ -1.14
CCDC3-202ENST00000378839 NOTCH2NLQ7Z3S9 236 aa7.91□□□□□ -1.14
CCDC3-202ENST00000378839 H0Y9P7 68 aa7.89□□□□□ -1.15
CCDC3-202ENST00000378839 KRTAP10-1P60331 282 aa7.88□□□□□ -1.15
CCDC3-202ENST00000378839 VPS13BQ7Z7G8 4022 aa7.88□□□□□ -1.15
CCDC3-202ENST00000378839 C8orf17Q9NRJ1 99 aa7.86□□□□□ -1.15
CCDC3-202ENST00000378839 IGHV6-1A0A0B4J1U7 121 aa7.86□□□□□ -1.15
CCDC3-202ENST00000378839 SPAG11AQ6PDA7 123 aa7.85□□□□□ -1.15
CCDC3-202ENST00000378839 NDUFB1O75438 58 aa7.85□□□□□ -1.15
CCDC3-202ENST00000378839 PKHD1P08F94 4074 aa7.85□□□□□ -1.15
CCDC3-202ENST00000378839 A0A1B0GVX0 72 aa7.84□□□□□ -1.15
CCDC3-202ENST00000378839 RBM12B-AS1Q9P1G2 102 aa7.84□□□□□ -1.15
CCDC3-202ENST00000378839 Q6ZSA8 131 aa7.83□□□□□ -1.16
CCDC3-202ENST00000378839 Q8N9P0 234 aaPredicted RBP7.83□□□□□ -1.16
CCDC3-202ENST00000378839 LCA10Q71F78 164 aa7.82□□□□□ -1.16
CCDC3-202ENST00000378839 SACSQ9NZJ4 4579 aa7.81□□□□□ -1.16
CCDC3-202ENST00000378839 CYP4F30PQ9H0H9 118 aa7.81□□□□□ -1.16
CCDC3-202ENST00000378839 CD164Q04900 197 aa7.8□□□□□ -1.16
CCDC3-202ENST00000378839 KRTAP13-2Q52LG2 175 aa7.8□□□□□ -1.16
CCDC3-202ENST00000378839 SPINK6Q6UWN8 80 aa7.8□□□□□ -1.16
CCDC3-202ENST00000378839 J3QL48 77 aa7.79□□□□□ -1.16
CCDC3-202ENST00000378839 NDUFS5O43920 106 aa7.79□□□□□ -1.16
CCDC3-202ENST00000378839 COA5Q86WW8 74 aa7.77□□□□□ -1.16
CCDC3-202ENST00000378839 H3BPC8 53 aa7.77□□□□□ -1.17
CCDC3-202ENST00000378839 KTN1-AS1Q86SY8 53 aa7.76□□□□□ -1.17
CCDC3-202ENST00000378839 MRPL34Q9BQ48 92 aaKnown RBP7.75□□□□□ -1.17
CCDC3-202ENST00000378839 KRTAP1-4P0C5Y4 121 aa7.74□□□□□ -1.17
CCDC3-202ENST00000378839 CDK2AP2O75956 126 aa7.73□□□□□ -1.17
CCDC3-202ENST00000378839 Q5W150 140 aa7.73□□□□□ -1.17
CCDC3-202ENST00000378839 SSBP3-AS1Q7Z2R9 100 aa7.73□□□□□ -1.17
CCDC3-202ENST00000378839 SPANXA2-OT1Q8N9U9 137 aa7.73□□□□□ -1.17
CCDC3-202ENST00000378839 PRAC1Q96KF2 57 aa7.73□□□□□ -1.17
CCDC3-202ENST00000378839 LIMD2Q9BT23 127 aa7.72□□□□□ -1.17
CCDC3-202ENST00000378839 TP53AIP1Q9HCN2 124 aa7.72□□□□□ -1.17
CCDC3-202ENST00000378839 SPINK7P58062 85 aa7.71□□□□□ -1.18
CCDC3-202ENST00000378839 KRTAP13-3Q3SY46 172 aa7.7□□□□□ -1.18
CCDC3-202ENST00000378839 IGLV7-46A0A075B6I9 117 aa7.68□□□□□ -1.18
CCDC3-202ENST00000378839 DYNC1H1Q14204 4646 aaKnown RBP7.68□□□□□ -1.18
CCDC3-202ENST00000378839 ADM2Q7Z4H4 148 aa7.65□□□□□ -1.18
CCDC3-202ENST00000378839 ATP11AUNQ6ZP68 121 aa7.65□□□□□ -1.18
CCDC3-202ENST00000378839 LOC101927531A0A1B0GV80 90 aa7.65□□□□□ -1.19
CCDC3-202ENST00000378839 PRR26Q8N8Z3 221 aa7.65□□□□□ -1.19
CCDC3-202ENST00000378839 A6NN06 94 aa7.62□□□□□ -1.19
CCDC3-202ENST00000378839 FAT1Q14517 4588 aa7.62□□□□□ -1.19
CCDC3-202ENST00000378839 Q75L30 129 aa7.61□□□□□ -1.19
CCDC3-202ENST00000378839 RETNLBQ9BQ08 111 aa7.61□□□□□ -1.19
CCDC3-202ENST00000378839 APOBP04114 4563 aaKnown RBP7.6□□□□□ -1.19
CCDC3-202ENST00000378839 KRTAP16-1A8MUX0 517 aa7.6□□□□□ -1.19
CCDC3-202ENST00000378839 PLA2G1BP04054 148 aaKnown RBP7.59□□□□□ -1.19
CCDC3-202ENST00000378839 LINC00313P59037 77 aa7.59□□□□□ -1.19
CCDC3-202ENST00000378839 CDC42SE1Q9NRR8 79 aa7.59□□□□□ -1.19
CCDC3-202ENST00000378839 C8orf87E5RJ46 101 aa7.58□□□□□ -1.2
CCDC3-202ENST00000378839 C7orf65Q6ZTY9 151 aa7.58□□□□□ -1.2
CCDC3-202ENST00000378839 SMR3BP02814 79 aaPredicted RBP7.56□□□□□ -1.2
CCDC3-202ENST00000378839 HRES1P13985 223 aa7.56□□□□□ -1.2
CCDC3-202ENST00000378839 RYR2Q92736 4967 aa7.55□□□□□ -1.2
CCDC3-202ENST00000378839 KMT2CQ8NEZ4 4911 aaKnown RBP7.55□□□□□ -1.2
CCDC3-202ENST00000378839 TYMSOSQ8TAI1 123 aa7.54□□□□□ -1.2
CCDC3-202ENST00000378839 PKHD1L1Q86WI1 4243 aa7.54□□□□□ -1.2
CCDC3-202ENST00000378839 A0A1B0GVY2 172 aa7.53□□□□□ -1.2
CCDC3-202ENST00000378839 FLG2Q5D862 2391 aaPredicted RBP7.52□□□□□ -1.21
CCDC3-202ENST00000378839 KRTAP10-4P60372 401 aaPredicted RBP7.5□□□□□ -1.21
CCDC3-202ENST00000378839 LINC01558Q9Y6Z2 57 aa7.48□□□□□ -1.21
CCDC3-202ENST00000378839 FAM229AH3BQW9 127 aa7.46□□□□□ -1.22
CCDC3-202ENST00000378839 SPINK1P00995 79 aa7.46□□□□□ -1.22
CCDC3-202ENST00000378839 IGKV2-30P06310 120 aa7.46□□□□□ -1.22
CCDC3-202ENST00000378839 LINC00304Q8N9R0 145 aa7.43□□□□□ -1.22
CCDC3-202ENST00000378839 H3BS24 57 aa7.42□□□□□ -1.22
CCDC3-202ENST00000378839 DMAC1Q96GE9 116 aa7.4□□□□□ -1.23
CCDC3-202ENST00000378839 RYR3Q15413 4870 aa7.39□□□□□ -1.23
CCDC3-202ENST00000378839 IGKV2D-30A0A075B6S6 120 aa7.38□□□□□ -1.23
CCDC3-202ENST00000378839 DMBT1Q9UGM3 2413 aaPredicted RBP7.37□□□□□ -1.23
CCDC3-202ENST00000378839 A0A1B0GU69 56 aa7.36□□□□□ -1.23
CCDC3-202ENST00000378839 LRP1Q07954 4544 aaKnown RBP7.36□□□□□ -1.23
CCDC3-202ENST00000378839 ACYP2P14621 99 aa7.35□□□□□ -1.23
CCDC3-202ENST00000378839 RPS29P62273 56 aaKnown RBP7.35□□□□□ -1.23
CCDC3-202ENST00000378839 TNXBP22105 4242 aa7.33□□□□□ -1.24
CCDC3-202ENST00000378839 LINC01554Q52M75 96 aa7.33□□□□□ -1.24
CCDC3-202ENST00000378839 HSPG2P98160 4391 aa7.32□□□□□ -1.24
CCDC3-202ENST00000378839 C9orf92A6NGG3 77 aa7.32□□□□□ -1.24
CCDC3-202ENST00000378839 CSAG1Q6PB30 78 aa7.32□□□□□ -1.24
CCDC3-202ENST00000378839 KRTAP3-3Q9BYR6 98 aa7.29□□□□□ -1.24
CCDC3-202ENST00000378839 KRTAP3-2Q9BYR7 98 aa7.29□□□□□ -1.24
CCDC3-202ENST00000378839 KRTAP17-1Q9BYP8 105 aa7.28□□□□□ -1.24
CCDC3-202ENST00000378839 FAT3Q8TDW7 4589 aa7.27□□□□□ -1.25
CCDC3-202ENST00000378839 MIR22HGQ0VDD5 57 aa7.26□□□□□ -1.25
CCDC3-202ENST00000378839 Q8N1X5 172 aa7.24□□□□□ -1.25
CCDC3-202ENST00000378839 A8MUU9 505 aa7.23□□□□□ -1.25
CCDC3-202ENST00000378839 C20orf166-AS1Q96NR2 134 aa7.23□□□□□ -1.25
CCDC3-202ENST00000378839 CRIPTQ9P021 101 aa7.23□□□□□ -1.25
CCDC3-202ENST00000378839 UQCR11O14957 56 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms