RNA–Protein interactions for RNA: ENST00000377453.8

CLN5-201, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLN5, Length 2,629 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-201ENST00000377453 CDK2AP2O75956 126 aa12.06□□□□□ -0.48
CLN5-201ENST00000377453 IGLV7-46A0A075B6I9 117 aa12.06□□□□□ -0.48
CLN5-201ENST00000377453 ZNF706Q9Y5V0 76 aaPredicted RBP12.04□□□□□ -0.48
CLN5-201ENST00000377453 CIRBP-AS1Q8TBR5 109 aa12.04□□□□□ -0.48
CLN5-201ENST00000377453 PLAC8Q9NZF1 115 aa12.04□□□□□ -0.48
CLN5-201ENST00000377453 DNAH6Q9C0G6 4158 aa12.03□□□□□ -0.48
CLN5-201ENST00000377453 MRPL34Q9BQ48 92 aaKnown RBP12.02□□□□□ -0.49
CLN5-201ENST00000377453 CHKB-CPT1BH3BT56 60 aa12.02□□□□□ -0.49
CLN5-201ENST00000377453 Q6ZR54 194 aa12□□□□□ -0.49
CLN5-201ENST00000377453 TP53AIP1Q9HCN2 124 aa12□□□□□ -0.49
CLN5-201ENST00000377453 Q5W150 140 aa11.99□□□□□ -0.49
CLN5-201ENST00000377453 V9GYY9 64 aa11.98□□□□□ -0.49
CLN5-201ENST00000377453 ALMS1Q8TCU4 4167 aa11.97□□□□□ -0.49
CLN5-201ENST00000377453 SPAG11AQ6PDA7 123 aa11.96□□□□□ -0.5
CLN5-201ENST00000377453 DNAH11Q96DT5 4516 aa11.95□□□□□ -0.5
CLN5-201ENST00000377453 IGLV7-43P04211 117 aa11.94□□□□□ -0.5
CLN5-201ENST00000377453 LIMD2Q9BT23 127 aa11.92□□□□□ -0.5
CLN5-201ENST00000377453 RETNLBQ9BQ08 111 aa11.92□□□□□ -0.5
CLN5-201ENST00000377453 HRES1P13985 223 aa11.91□□□□□ -0.5
CLN5-201ENST00000377453 C1orf134Q5TEV5 83 aa11.91□□□□□ -0.5
CLN5-201ENST00000377453 LY6G6CO95867 125 aa11.91□□□□□ -0.5
CLN5-201ENST00000377453 HYDINQ4G0P3 5121 aa11.9□□□□□ -0.5
CLN5-201ENST00000377453 KRTAP10-2P60368 255 aa11.89□□□□□ -0.51
CLN5-201ENST00000377453 DNAH5Q8TE73 4624 aa11.88□□□□□ -0.51
CLN5-201ENST00000377453 LCA10Q71F78 164 aa11.85□□□□□ -0.51
CLN5-201ENST00000377453 A6NED7 52 aa11.85□□□□□ -0.51
CLN5-201ENST00000377453 SPTSSBQ8NFR3 76 aa11.83□□□□□ -0.52
CLN5-201ENST00000377453 PRR26Q8N8Z3 221 aa11.82□□□□□ -0.52
CLN5-201ENST00000377453 KRTAP13-3Q3SY46 172 aa11.81□□□□□ -0.52
CLN5-201ENST00000377453 Q75L30 129 aa11.8□□□□□ -0.52
CLN5-201ENST00000377453 LRP1BQ9NZR2 4599 aa11.8□□□□□ -0.52
CLN5-201ENST00000377453 LOC101927531A0A1B0GV80 90 aa11.79□□□□□ -0.52
CLN5-201ENST00000377453 PMAIP1Q13794 54 aa11.79□□□□□ -0.52
CLN5-201ENST00000377453 KRTAP13-2Q52LG2 175 aa11.76□□□□□ -0.53
CLN5-201ENST00000377453 SEC61GP60059 68 aa11.75□□□□□ -0.53
CLN5-201ENST00000377453 LINC01558Q9Y6Z2 57 aa11.74□□□□□ -0.53
CLN5-201ENST00000377453 SPINK7P58062 85 aa11.74□□□□□ -0.53
CLN5-201ENST00000377453 KRTAP10-1P60331 282 aa11.7□□□□□ -0.54
CLN5-201ENST00000377453 SSBP3-AS1Q7Z2R9 100 aa11.7□□□□□ -0.54
CLN5-201ENST00000377453 LINC00313P59037 77 aa11.69□□□□□ -0.54
CLN5-201ENST00000377453 C8orf87E5RJ46 101 aa11.62□□□□□ -0.55
CLN5-201ENST00000377453 PKD1P98161 4303 aa11.62□□□□□ -0.55
CLN5-201ENST00000377453 CDC42SE1Q9NRR8 79 aa11.6□□□□□ -0.55
CLN5-201ENST00000377453 VPS13BQ7Z7G8 4022 aa11.6□□□□□ -0.55
CLN5-201ENST00000377453 FAT2Q9NYQ8 4349 aa11.58□□□□□ -0.56
CLN5-201ENST00000377453 ACYP2P14621 99 aa11.57□□□□□ -0.56
CLN5-201ENST00000377453 KRTAP1-4P0C5Y4 121 aa11.56□□□□□ -0.56
CLN5-201ENST00000377453 ATP11AUNQ6ZP68 121 aa11.56□□□□□ -0.56
CLN5-201ENST00000377453 KRTAP16-1A8MUX0 517 aa11.55□□□□□ -0.56
CLN5-201ENST00000377453 IGKV2D-30A0A075B6S6 120 aa11.55□□□□□ -0.56
CLN5-201ENST00000377453 FAM229AH3BQW9 127 aa11.55□□□□□ -0.56
CLN5-201ENST00000377453 IGKV2-30P06310 120 aa11.55□□□□□ -0.56
CLN5-201ENST00000377453 DMAC1Q96GE9 116 aa11.54□□□□□ -0.56
CLN5-201ENST00000377453 Q6ZSA8 131 aa11.52□□□□□ -0.57
CLN5-201ENST00000377453 A6NN06 94 aa11.52□□□□□ -0.57
CLN5-201ENST00000377453 KRTAP21-3Q3LHN1 58 aa11.5□□□□□ -0.57
CLN5-201ENST00000377453 PKHD1P08F94 4074 aa11.49□□□□□ -0.57
CLN5-201ENST00000377453 SACSQ9NZJ4 4579 aa11.48□□□□□ -0.57
CLN5-201ENST00000377453 PLA2G1BP04054 148 aaKnown RBP11.45□□□□□ -0.58
CLN5-201ENST00000377453 KTN1-AS1Q86SY8 53 aa11.45□□□□□ -0.58
CLN5-201ENST00000377453 TYMSOSQ8TAI1 123 aa11.41□□□□□ -0.58
CLN5-201ENST00000377453 C4orf48Q5BLP8 95 aa11.38□□□□□ -0.59
CLN5-201ENST00000377453 A0A1B0GU69 56 aa11.37□□□□□ -0.59
CLN5-201ENST00000377453 C7orf65Q6ZTY9 151 aa11.36□□□□□ -0.59
CLN5-201ENST00000377453 KMT2CQ8NEZ4 4911 aaKnown RBP11.34□□□□□ -0.59
CLN5-201ENST00000377453 Q8N1X5 172 aa11.33□□□□□ -0.6
CLN5-201ENST00000377453 SPINK1P00995 79 aa11.33□□□□□ -0.6
CLN5-201ENST00000377453 SMR3BP02814 79 aaPredicted RBP11.32□□□□□ -0.6
CLN5-201ENST00000377453 RBM12B-AS1Q9P1G2 102 aa11.3□□□□□ -0.6
CLN5-201ENST00000377453 FAT1Q14517 4588 aa11.23□□□□□ -0.61
CLN5-201ENST00000377453 C9orf92A6NGG3 77 aa11.23□□□□□ -0.61
CLN5-201ENST00000377453 ADM2Q7Z4H4 148 aa11.22□□□□□ -0.61
CLN5-201ENST00000377453 PRAC1Q96KF2 57 aa11.22□□□□□ -0.61
CLN5-201ENST00000377453 LINC00304Q8N9R0 145 aa11.22□□□□□ -0.61
CLN5-201ENST00000377453 DYNC1H1Q14204 4646 aaKnown RBP11.2□□□□□ -0.62
CLN5-201ENST00000377453 RYR2Q92736 4967 aa11.19□□□□□ -0.62
CLN5-201ENST00000377453 MIR22HGQ0VDD5 57 aa11.16□□□□□ -0.62
CLN5-201ENST00000377453 SPATA8Q6RVD6 105 aa11.14□□□□□ -0.63
CLN5-201ENST00000377453 UQCR11O14957 56 aa11.11□□□□□ -0.63
CLN5-201ENST00000377453 RYR3Q15413 4870 aa11.02□□□□□ -0.64
CLN5-201ENST00000377453 APOBP04114 4563 aaKnown RBP11.02□□□□□ -0.65
CLN5-201ENST00000377453 KRTAP3-1Q9BYR8 98 aa10.99□□□□□ -0.65
CLN5-201ENST00000377453 PKHD1L1Q86WI1 4243 aa10.96□□□□□ -0.66
CLN5-201ENST00000377453 A0A1B0GVY2 172 aa10.95□□□□□ -0.66
CLN5-201ENST00000377453 KRTAP10-4P60372 401 aaPredicted RBP10.94□□□□□ -0.66
CLN5-201ENST00000377453 A8MUU9 505 aa10.93□□□□□ -0.66
CLN5-201ENST00000377453 RPS29P62273 56 aaKnown RBP10.93□□□□□ -0.66
CLN5-201ENST00000377453 C20orf166-AS1Q96NR2 134 aa10.92□□□□□ -0.66
CLN5-201ENST00000377453 H0YAA0 97 aa10.86□□□□□ -0.67
CLN5-201ENST00000377453 LRP1Q07954 4544 aaKnown RBP10.83□□□□□ -0.68
CLN5-201ENST00000377453 FLG2Q5D862 2391 aaPredicted RBP10.81□□□□□ -0.68
CLN5-201ENST00000377453 CSAG1Q6PB30 78 aa10.78□□□□□ -0.68
CLN5-201ENST00000377453 A0A1B0GU33 70 aa10.72□□□□□ -0.69
CLN5-201ENST00000377453 HSPG2P98160 4391 aa10.7□□□□□ -0.7
CLN5-201ENST00000377453 KIAA1109Q2LD37 5005 aa10.7□□□□□ -0.7
CLN5-201ENST00000377453 FAT3Q8TDW7 4589 aa10.69□□□□□ -0.7
CLN5-201ENST00000377453 MYCBP2O75592 4640 aa10.69□□□□□ -0.7
CLN5-201ENST00000377453 H1FX-AS1Q4G0G2 97 aa10.68□□□□□ -0.7
CLN5-201ENST00000377453 EPPK1P58107 5090 aaKnown RBP10.66□□□□□ -0.7
CLN5-201ENST00000377453 LINC01554Q52M75 96 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms