RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 A8MUU9 505 aa6.08□□□□□ -1.44
CD28-202ENST00000374481 NBPF19A0A087WUL8 3843 aa6.07□□□□□ -1.44
CD28-202ENST00000374481 H1FX-AS1Q4G0G2 97 aa6.06□□□□□ -1.44
CD28-202ENST00000374481 TEX15Q9BXT5 2789 aa6.06□□□□□ -1.44
CD28-202ENST00000374481 RPL37P61927 97 aaKnown RBP6.05□□□□□ -1.44
CD28-202ENST00000374481 KRTAP1-3Q8IUG1 177 aa6.03□□□□□ -1.44
CD28-202ENST00000374481 KRTAP10-11P60412 298 aa6.03□□□□□ -1.44
CD28-202ENST00000374481 IGSF10Q6WRI0 2623 aa6.03□□□□□ -1.44
CD28-202ENST00000374481 CELSR1Q9NYQ6 3014 aa6.02□□□□□ -1.44
CD28-202ENST00000374481 KRTAP7-1Q8IUC3 87 aa6.02□□□□□ -1.45
CD28-202ENST00000374481 PANO1I0J062 215 aa6.01□□□□□ -1.45
CD28-202ENST00000374481 APCP25054 2843 aa6.01□□□□□ -1.45
CD28-202ENST00000374481 C9orf92A6NGG3 77 aa6.01□□□□□ -1.45
CD28-202ENST00000374481 LINC00483Q53H64 154 aa6.01□□□□□ -1.45
CD28-202ENST00000374481 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.01□□□□□ -1.45
CD28-202ENST00000374481 UBR5O95071 2799 aaPredicted RBP6□□□□□ -1.45
CD28-202ENST00000374481 LINC00304Q8N9R0 145 aa6□□□□□ -1.45
CD28-202ENST00000374481 UTP20O75691 2785 aaKnown RBP5.99□□□□□ -1.45
CD28-202ENST00000374481 C20orf166-AS1Q96NR2 134 aa5.98□□□□□ -1.45
CD28-202ENST00000374481 A0A087WTM6 91 aa5.98□□□□□ -1.45
CD28-202ENST00000374481 KRTAP11-1Q8IUC1 163 aa5.97□□□□□ -1.45
CD28-202ENST00000374481 FLNCQ14315 2725 aa5.97□□□□□ -1.45
CD28-202ENST00000374481 KMT2BQ9UMN6 2715 aaPredicted RBP5.96□□□□□ -1.46
CD28-202ENST00000374481 KRTAP1-1Q07627 177 aa5.94□□□□□ -1.46
CD28-202ENST00000374481 STAB2Q8WWQ8 2551 aa5.94□□□□□ -1.46
CD28-202ENST00000374481 CELSR2Q9HCU4 2923 aa5.92□□□□□ -1.46
CD28-202ENST00000374481 ZANQ9Y493 2812 aa5.92□□□□□ -1.46
CD28-202ENST00000374481 NSD1Q96L73 2696 aaPredicted RBP5.9□□□□□ -1.47
CD28-202ENST00000374481 KRTAP1-5Q9BYS1 174 aa5.89□□□□□ -1.47
CD28-202ENST00000374481 AKAP9Q99996 3911 aa5.89□□□□□ -1.47
CD28-202ENST00000374481 ZNF469Q96JG9 3925 aaPredicted RBP5.87□□□□□ -1.47
CD28-202ENST00000374481 Q6ZSA8 131 aa5.87□□□□□ -1.47
CD28-202ENST00000374481 HIVEP1P15822 2718 aa5.83□□□□□ -1.48
CD28-202ENST00000374481 H0YAA0 97 aa5.82□□□□□ -1.48
CD28-202ENST00000374481 MXRA5Q9NR99 2828 aa5.82□□□□□ -1.48
CD28-202ENST00000374481 FBN2P35556 2912 aa5.81□□□□□ -1.48
CD28-202ENST00000374481 COX6B2Q6YFQ2 88 aa5.8□□□□□ -1.48
CD28-202ENST00000374481 KRTAP13-1Q8IUC0 172 aa5.79□□□□□ -1.48
CD28-202ENST00000374481 C10orf95Q9H7T3 257 aa5.77□□□□□ -1.49
CD28-202ENST00000374481 NF1P21359 2839 aa5.77□□□□□ -1.49
CD28-202ENST00000374481 S4R3F8 94 aa5.74□□□□□ -1.49
CD28-202ENST00000374481 NIPBLQ6KC79 2804 aaeCLIP5.74□□□□□ -1.49
CD28-202ENST00000374481 TENM4Q6N022 2769 aa5.7□□□□□ -1.5
CD28-202ENST00000374481 SEC61BP60468 96 aaKnown RBP5.69□□□□□ -1.5
CD28-202ENST00000374481 P0C880 135 aa5.69□□□□□ -1.5
CD28-202ENST00000374481 CAMK2N1Q7Z7J9 78 aa5.68□□□□□ -1.5
CD28-202ENST00000374481 KRTAP13-3Q3SY46 172 aa5.66□□□□□ -1.5
CD28-202ENST00000374481 SMR3BP02814 79 aaPredicted RBP5.64□□□□□ -1.51
CD28-202ENST00000374481 CSMD3Q7Z407 3707 aa5.63□□□□□ -1.51
CD28-202ENST00000374481 ITPR2Q14571 2701 aa5.62□□□□□ -1.51
CD28-202ENST00000374481 R4GN34 69 aa5.62□□□□□ -1.51
CD28-202ENST00000374481 TGP01266 2768 aa5.61□□□□□ -1.51
CD28-202ENST00000374481 PLAC4Q8WY50 150 aa5.58□□□□□ -1.52
CD28-202ENST00000374481 KRTAP13-2Q52LG2 175 aa5.57□□□□□ -1.52
CD28-202ENST00000374481 M0QZ58 72 aa5.57□□□□□ -1.52
CD28-202ENST00000374481 PDZD2O15018 2839 aa5.55□□□□□ -1.52
CD28-202ENST00000374481 Q6ZRN7 208 aaPredicted RBP5.52□□□□□ -1.53
CD28-202ENST00000374481 TPRXLQ17RH7 258 aa5.52□□□□□ -1.53
CD28-202ENST00000374481 FBN3Q75N90 2809 aa5.47□□□□□ -1.53
CD28-202ENST00000374481 TENM3Q9P273 2699 aa5.47□□□□□ -1.53
CD28-202ENST00000374481 VWFP04275 2813 aa5.46□□□□□ -1.54
CD28-202ENST00000374481 KRTAP10-2P60368 255 aa5.46□□□□□ -1.54
CD28-202ENST00000374481 SRRM2Q9UQ35 2752 aaKnown RBP5.44□□□□□ -1.54
CD28-202ENST00000374481 KRTAP10-1P60331 282 aa5.44□□□□□ -1.54
CD28-202ENST00000374481 RPS29P62273 56 aaKnown RBP5.42□□□□□ -1.54
CD28-202ENST00000374481 TENM1Q9UKZ4 2725 aa5.41□□□□□ -1.54
CD28-202ENST00000374481 KRTAP15-1Q3LI76 137 aa5.4□□□□□ -1.54
CD28-202ENST00000374481 ANK3Q12955 4377 aaKnown RBP5.4□□□□□ -1.55
CD28-202ENST00000374481 Q5VSD8 79 aa5.39□□□□□ -1.55
CD28-202ENST00000374481 KRTAP10-8P60410 259 aa5.37□□□□□ -1.55
CD28-202ENST00000374481 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
CD28-202ENST00000374481 ANK2Q01484 3957 aa5.31□□□□□ -1.56
CD28-202ENST00000374481 PKD1L1Q8TDX9 2849 aa5.3□□□□□ -1.56
CD28-202ENST00000374481 KRTAP12-2P59991 146 aa5.29□□□□□ -1.56
CD28-202ENST00000374481 OTOGQ6ZRI0 2925 aa5.29□□□□□ -1.56
CD28-202ENST00000374481 KRTAP1-4P0C5Y4 121 aa5.28□□□□□ -1.56
CD28-202ENST00000374481 KRTAP3-3Q9BYR6 98 aa5.25□□□□□ -1.57
CD28-202ENST00000374481 KRTAP3-2Q9BYR7 98 aa5.25□□□□□ -1.57
CD28-202ENST00000374481 KRTAP3-1Q9BYR8 98 aa5.24□□□□□ -1.57
CD28-202ENST00000374481 TRRAPQ9Y4A5 3859 aa5.24□□□□□ -1.57
CD28-202ENST00000374481 KRTAP13-4Q3LI77 160 aa5.21□□□□□ -1.58
CD28-202ENST00000374481 TENM2Q9NT68 2774 aa5.21□□□□□ -1.58
CD28-202ENST00000374481 TNP1P09430 55 aa5.21□□□□□ -1.58
CD28-202ENST00000374481 KRTAP12-1P59990 96 aa5.21□□□□□ -1.58
CD28-202ENST00000374481 KRTAP10-6P60371 365 aaPredicted RBP5.16□□□□□ -1.58
CD28-202ENST00000374481 COL7A1Q02388 2944 aa5.16□□□□□ -1.58
CD28-202ENST00000374481 FBN1P35555 2871 aaKnown RBP5.14□□□□□ -1.59
CD28-202ENST00000374481 LYSTQ99698 3801 aa5.14□□□□□ -1.59
CD28-202ENST00000374481 XP32Q5T750 250 aa5.13□□□□□ -1.59
CD28-202ENST00000374481 M0R2T5 61 aa5.12□□□□□ -1.59
CD28-202ENST00000374481 MEGF8Q7Z7M0 2845 aa5.05□□□□□ -1.6
CD28-202ENST00000374481 DNHD1Q96M86 4753 aa4.98□□□□□ -1.61
CD28-202ENST00000374481 HUWE1Q7Z6Z7 4374 aaKnown RBP4.98□□□□□ -1.61
CD28-202ENST00000374481 PRO2289Q9P1D8 64 aa4.96□□□□□ -1.62
CD28-202ENST00000374481 CMYA5Q8N3K9 4069 aa4.96□□□□□ -1.62
CD28-202ENST00000374481 LCE2DQ5TA82 110 aaPredicted RBP4.9□□□□□ -1.63
CD28-202ENST00000374481 INE1O15225 51 aa4.89□□□□□ -1.63
CD28-202ENST00000374481 DNAH7Q8WXX0 4024 aa4.88□□□□□ -1.63
CD28-202ENST00000374481 DNAH10Q8IVF4 4471 aa4.88□□□□□ -1.63
CD28-202ENST00000374481 A0A1B0GVY2 172 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms