RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 H1FX-AS1Q4G0G2 97 aa3.68□□□□□ -1.82
VPS13B-203ENST00000358544 OTOGQ6ZRI0 2925 aa3.68□□□□□ -1.82
VPS13B-203ENST00000358544 CAMK2N1Q7Z7J9 78 aa3.68□□□□□ -1.82
VPS13B-203ENST00000358544 CFAP47Q6ZTR5 3102 aa3.68□□□□□ -1.82
VPS13B-203ENST00000358544 A0A087WTM6 91 aa3.67□□□□□ -1.82
VPS13B-203ENST00000358544 COX6B2Q6YFQ2 88 aa3.67□□□□□ -1.82
VPS13B-203ENST00000358544 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.67□□□□□ -1.82
VPS13B-203ENST00000358544 SPTBN5Q9NRC6 3674 aaKnown RBP3.66□□□□□ -1.82
VPS13B-203ENST00000358544 MYO15AQ9UKN7 3530 aa3.66□□□□□ -1.82
VPS13B-203ENST00000358544 RPL37P61927 97 aaKnown RBP3.66□□□□□ -1.82
VPS13B-203ENST00000358544 KRTAP10-3P60369 221 aa3.65□□□□□ -1.82
VPS13B-203ENST00000358544 NDUFAF8A1L188 74 aa3.65□□□□□ -1.83
VPS13B-203ENST00000358544 K7EIL1 84 aa3.65□□□□□ -1.83
VPS13B-203ENST00000358544 KRTAP4-16G5E9R7 235 aaPredicted RBP3.63□□□□□ -1.83
VPS13B-203ENST00000358544 KRTAP24-1Q3LI83 254 aa3.62□□□□□ -1.83
VPS13B-203ENST00000358544 S4R3F8 94 aa3.61□□□□□ -1.83
VPS13B-203ENST00000358544 SPEGQ15772 3267 aa3.61□□□□□ -1.83
VPS13B-203ENST00000358544 VCANP13611 3396 aa3.6□□□□□ -1.83
VPS13B-203ENST00000358544 A8MUU9 505 aa3.59□□□□□ -1.84
VPS13B-203ENST00000358544 WDFY3Q8IZQ1 3526 aa3.59□□□□□ -1.84
VPS13B-203ENST00000358544 SEC61BP60468 96 aaKnown RBP3.59□□□□□ -1.84
VPS13B-203ENST00000358544 KRTAP1-1Q07627 177 aa3.58□□□□□ -1.84
VPS13B-203ENST00000358544 WWC2-AS2Q96NR7 200 aa3.58□□□□□ -1.84
VPS13B-203ENST00000358544 COL6A3P12111 3177 aa3.57□□□□□ -1.84
VPS13B-203ENST00000358544 NOTCH2NLQ7Z3S9 236 aa3.57□□□□□ -1.84
VPS13B-203ENST00000358544 PANO1I0J062 215 aa3.57□□□□□ -1.84
VPS13B-203ENST00000358544 KRTAP1-3Q8IUG1 177 aa3.56□□□□□ -1.84
VPS13B-203ENST00000358544 PLAC8Q9NZF1 115 aa3.54□□□□□ -1.84
VPS13B-203ENST00000358544 CELSR3Q9NYQ7 3312 aa3.53□□□□□ -1.84
VPS13B-203ENST00000358544 KRTAP1-5Q9BYS1 174 aa3.52□□□□□ -1.85
VPS13B-203ENST00000358544 KRTAP11-1Q8IUC1 163 aa3.5□□□□□ -1.85
VPS13B-203ENST00000358544 M0QZ58 72 aa3.5□□□□□ -1.85
VPS13B-203ENST00000358544 C20orf166-AS1Q96NR2 134 aa3.5□□□□□ -1.85
VPS13B-203ENST00000358544 DMDP11532 3685 aa3.49□□□□□ -1.85
VPS13B-203ENST00000358544 SMR3BP02814 79 aaPredicted RBP3.48□□□□□ -1.85
VPS13B-203ENST00000358544 KRTAP7-1Q8IUC3 87 aa3.47□□□□□ -1.85
VPS13B-203ENST00000358544 Q6ZSA8 131 aa3.47□□□□□ -1.85
VPS13B-203ENST00000358544 RPS29P62273 56 aaKnown RBP3.47□□□□□ -1.85
VPS13B-203ENST00000358544 MUC3AQ02505 3323 aa3.46□□□□□ -1.86
VPS13B-203ENST00000358544 PP632Q6XCG6 107 aa3.45□□□□□ -1.86
VPS13B-203ENST00000358544 R4GN34 69 aa3.45□□□□□ -1.86
VPS13B-203ENST00000358544 KRTAP13-1Q8IUC0 172 aa3.42□□□□□ -1.86
VPS13B-203ENST00000358544 H0YAA0 97 aa3.41□□□□□ -1.86
VPS13B-203ENST00000358544 PLAC4Q8WY50 150 aa3.4□□□□□ -1.87
VPS13B-203ENST00000358544 C10orf95Q9H7T3 257 aa3.39□□□□□ -1.87
VPS13B-203ENST00000358544 ASPMQ8IZT6 3477 aa3.38□□□□□ -1.87
VPS13B-203ENST00000358544 ZFHX4Q86UP3 3567 aa3.37□□□□□ -1.87
VPS13B-203ENST00000358544 P0C880 135 aa3.37□□□□□ -1.87
VPS13B-203ENST00000358544 KRTAP10-1P60331 282 aa3.37□□□□□ -1.87
VPS13B-203ENST00000358544 J3QL48 77 aa3.35□□□□□ -1.87
VPS13B-203ENST00000358544 KRTAP13-2Q52LG2 175 aa3.34□□□□□ -1.87
VPS13B-203ENST00000358544 KRTAP10-2P60368 255 aa3.34□□□□□ -1.88
VPS13B-203ENST00000358544 DCHS1Q96JQ0 3298 aa3.32□□□□□ -1.88
VPS13B-203ENST00000358544 LOC400499M0QZD8 3231 aa3.32□□□□□ -1.88
VPS13B-203ENST00000358544 Q6ZRN7 208 aaPredicted RBP3.32□□□□□ -1.88
VPS13B-203ENST00000358544 TNP1P09430 55 aa3.3□□□□□ -1.88
VPS13B-203ENST00000358544 LAMA5O15230 3695 aa3.3□□□□□ -1.88
VPS13B-203ENST00000358544 SPENQ96T58 3664 aaKnown RBP3.29□□□□□ -1.88
VPS13B-203ENST00000358544 BSNQ9UPA5 3926 aa3.26□□□□□ -1.89
VPS13B-203ENST00000358544 KRTAP13-3Q3SY46 172 aa3.25□□□□□ -1.89
VPS13B-203ENST00000358544 ZFHX3Q15911 3703 aa3.25□□□□□ -1.89
VPS13B-203ENST00000358544 AKAP9Q99996 3911 aa3.24□□□□□ -1.89
VPS13B-203ENST00000358544 TPRXLQ17RH7 258 aa3.22□□□□□ -1.89
VPS13B-203ENST00000358544 Q5VSD8 79 aa3.22□□□□□ -1.89
VPS13B-203ENST00000358544 SMG1Q96Q15 3661 aaKnown RBP3.2□□□□□ -1.9
VPS13B-203ENST00000358544 M0R2T5 61 aa3.19□□□□□ -1.9
VPS13B-203ENST00000358544 KRTAP10-8P60410 259 aa3.16□□□□□ -1.9
VPS13B-203ENST00000358544 CSMD1Q96PZ7 3565 aa3.16□□□□□ -1.9
VPS13B-203ENST00000358544 KRTAP1-4P0C5Y4 121 aa3.15□□□□□ -1.9
VPS13B-203ENST00000358544 NBPF19A0A087WUL8 3843 aa3.14□□□□□ -1.91
VPS13B-203ENST00000358544 VPS13CQ709C8 3753 aa3.14□□□□□ -1.91
VPS13B-203ENST00000358544 RELNP78509 3460 aa3.14□□□□□ -1.91
VPS13B-203ENST00000358544 KRTAP12-2P59991 146 aa3.11□□□□□ -1.91
VPS13B-203ENST00000358544 ZNF469Q96JG9 3925 aaPredicted RBP3.1□□□□□ -1.91
VPS13B-203ENST00000358544 KRTAP15-1Q3LI76 137 aa3.1□□□□□ -1.91
VPS13B-203ENST00000358544 TRRAPQ9Y4A5 3859 aa3.07□□□□□ -1.92
VPS13B-203ENST00000358544 SVEP1Q4LDE5 3571 aa3.07□□□□□ -1.92
VPS13B-203ENST00000358544 XP32Q5T750 250 aa3.07□□□□□ -1.92
VPS13B-203ENST00000358544 KRTAP12-1P59990 96 aa3.06□□□□□ -1.92
VPS13B-203ENST00000358544 CSMD2Q7Z408 3487 aa3.04□□□□□ -1.92
VPS13B-203ENST00000358544 INE1O15225 51 aa3.04□□□□□ -1.92
VPS13B-203ENST00000358544 KRTAP13-4Q3LI77 160 aa3.03□□□□□ -1.92
VPS13B-203ENST00000358544 CMYA5Q8N3K9 4069 aa3□□□□□ -1.93
VPS13B-203ENST00000358544 KRTAP3-1Q9BYR8 98 aa3□□□□□ -1.93
VPS13B-203ENST00000358544 DNAH3Q8TD57 4116 aa3□□□□□ -1.93
VPS13B-203ENST00000358544 KRTAP10-6P60371 365 aaPredicted RBP2.99□□□□□ -1.93
VPS13B-203ENST00000358544 ALMS1Q8TCU4 4167 aa2.97□□□□□ -1.93
VPS13B-203ENST00000358544 PRO2289Q9P1D8 64 aa2.95□□□□□ -1.94
VPS13B-203ENST00000358544 CUBNO60494 3623 aa2.94□□□□□ -1.94
VPS13B-203ENST00000358544 KRTAP23-1A1A580 65 aa2.93□□□□□ -1.94
VPS13B-203ENST00000358544 KRTAP3-2Q9BYR7 98 aa2.91□□□□□ -1.94
VPS13B-203ENST00000358544 HECTD4Q9Y4D8 3996 aa2.88□□□□□ -1.95
VPS13B-203ENST00000358544 ANK2Q01484 3957 aa2.88□□□□□ -1.95
VPS13B-203ENST00000358544 A0A1B0GVY2 172 aa2.86□□□□□ -1.95
VPS13B-203ENST00000358544 LYSTQ99698 3801 aa2.85□□□□□ -1.95
VPS13B-203ENST00000358544 DNAH7Q8WXX0 4024 aa2.85□□□□□ -1.95
VPS13B-203ENST00000358544 KRTAP21-3Q3LHN1 58 aa2.81□□□□□ -1.96
VPS13B-203ENST00000358544 KRTAP10-10P60014 251 aa2.8□□□□□ -1.96
VPS13B-203ENST00000358544 KRTAP3-3Q9BYR6 98 aa2.8□□□□□ -1.96
VPS13B-203ENST00000358544 DNAH1Q9P2D7 4330 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms