RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ANK3Q12955 4377 aaKnown RBP3.96□□□□□ -1.78
VPS13A-202ENST00000357409 ZFHX3Q15911 3703 aa3.96□□□□□ -1.78
VPS13A-202ENST00000357409 TRANK1O15050 2925 aa3.96□□□□□ -1.78
VPS13A-202ENST00000357409 NBEAQ8NFP9 2946 aa3.94□□□□□ -1.78
VPS13A-202ENST00000357409 ITPR3Q14573 2671 aa3.94□□□□□ -1.78
VPS13A-202ENST00000357409 XP32Q5T750 250 aa3.92□□□□□ -1.78
VPS13A-202ENST00000357409 FLNBO75369 2602 aaKnown RBP3.91□□□□□ -1.78
VPS13A-202ENST00000357409 KRTAP25-1Q3LHN0 102 aa3.91□□□□□ -1.78
VPS13A-202ENST00000357409 CHD6Q8TD26 2715 aa3.89□□□□□ -1.79
VPS13A-202ENST00000357409 CRCT1Q9UGL9 99 aa3.88□□□□□ -1.79
VPS13A-202ENST00000357409 KRTAP16-1A8MUX0 517 aa3.87□□□□□ -1.79
VPS13A-202ENST00000357409 TEX15Q9BXT5 2789 aa3.86□□□□□ -1.79
VPS13A-202ENST00000357409 EPG5Q9HCE0 2579 aa3.86□□□□□ -1.79
VPS13A-202ENST00000357409 KRTAP13-1Q8IUC0 172 aa3.85□□□□□ -1.79
VPS13A-202ENST00000357409 CFAP46Q8IYW2 2715 aa3.85□□□□□ -1.79
VPS13A-202ENST00000357409 NBEAL2Q6ZNJ1 2754 aa3.85□□□□□ -1.79
VPS13A-202ENST00000357409 CELSR1Q9NYQ6 3014 aa3.84□□□□□ -1.79
VPS13A-202ENST00000357409 P0C880 135 aa3.83□□□□□ -1.8
VPS13A-202ENST00000357409 KRTAP1-4P0C5Y4 121 aa3.83□□□□□ -1.8
VPS13A-202ENST00000357409 ATRQ13535 2644 aa3.83□□□□□ -1.8
VPS13A-202ENST00000357409 HUWE1Q7Z6Z7 4374 aaKnown RBP3.82□□□□□ -1.8
VPS13A-202ENST00000357409 FLNAP21333 2647 aaKnown RBP3.81□□□□□ -1.8
VPS13A-202ENST00000357409 BSNQ9UPA5 3926 aa3.8□□□□□ -1.8
VPS13A-202ENST00000357409 CSMD3Q7Z407 3707 aa3.77□□□□□ -1.81
VPS13A-202ENST00000357409 ASB16-AS1Q495Z4 193 aa3.75□□□□□ -1.81
VPS13A-202ENST00000357409 TEP1Q99973 2627 aaKnown RBP3.75□□□□□ -1.81
VPS13A-202ENST00000357409 MAP1AP78559 2803 aaPredicted RBP3.75□□□□□ -1.81
VPS13A-202ENST00000357409 A6NN06 94 aa3.75□□□□□ -1.81
VPS13A-202ENST00000357409 HELZ2Q9BYK8 2649 aaKnown RBP3.74□□□□□ -1.81
VPS13A-202ENST00000357409 VPS13CQ709C8 3753 aa3.73□□□□□ -1.81
VPS13A-202ENST00000357409 H0YAA0 97 aa3.73□□□□□ -1.81
VPS13A-202ENST00000357409 DMBT1Q9UGM3 2413 aaPredicted RBP3.73□□□□□ -1.81
VPS13A-202ENST00000357409 RPS29P62273 56 aaKnown RBP3.73□□□□□ -1.81
VPS13A-202ENST00000357409 MAST4O15021 2626 aa3.72□□□□□ -1.81
VPS13A-202ENST00000357409 SETXQ7Z333 2677 aaKnown RBP3.72□□□□□ -1.81
VPS13A-202ENST00000357409 FLG2Q5D862 2391 aaPredicted RBP3.7□□□□□ -1.82
VPS13A-202ENST00000357409 KMT2BQ9UMN6 2715 aaPredicted RBP3.69□□□□□ -1.82
VPS13A-202ENST00000357409 KRTAP13-3Q3SY46 172 aa3.68□□□□□ -1.82
VPS13A-202ENST00000357409 HIVEP1P15822 2718 aa3.68□□□□□ -1.82
VPS13A-202ENST00000357409 KRTAP21-3Q3LHN1 58 aa3.67□□□□□ -1.82
VPS13A-202ENST00000357409 PRO2289Q9P1D8 64 aa3.67□□□□□ -1.82
VPS13A-202ENST00000357409 KRTAP12-2P59991 146 aa3.66□□□□□ -1.82
VPS13A-202ENST00000357409 TPRXLQ17RH7 258 aa3.66□□□□□ -1.82
VPS13A-202ENST00000357409 CELSR2Q9HCU4 2923 aa3.65□□□□□ -1.82
VPS13A-202ENST00000357409 STAB1Q9NY15 2570 aa3.65□□□□□ -1.82
VPS13A-202ENST00000357409 TENM2Q9NT68 2774 aa3.65□□□□□ -1.82
VPS13A-202ENST00000357409 BAHCC1Q9P281 2608 aa3.65□□□□□ -1.83
VPS13A-202ENST00000357409 KRTAP4-5Q9BYR2 181 aa3.64□□□□□ -1.83
VPS13A-202ENST00000357409 DCHS2Q6V1P9 2916 aa3.61□□□□□ -1.83
VPS13A-202ENST00000357409 NBEAL1Q6ZS30 2694 aa3.6□□□□□ -1.83
VPS13A-202ENST00000357409 UNC79Q9P2D8 2635 aa3.6□□□□□ -1.83
VPS13A-202ENST00000357409 FBN2P35556 2912 aa3.6□□□□□ -1.83
VPS13A-202ENST00000357409 COL6A5A8TX70 2615 aa3.58□□□□□ -1.84
VPS13A-202ENST00000357409 CENPEQ02224 2701 aa3.57□□□□□ -1.84
VPS13A-202ENST00000357409 UBR5O95071 2799 aaPredicted RBP3.57□□□□□ -1.84
VPS13A-202ENST00000357409 STAB2Q8WWQ8 2551 aa3.56□□□□□ -1.84
VPS13A-202ENST00000357409 TENM4Q6N022 2769 aa3.55□□□□□ -1.84
VPS13A-202ENST00000357409 UTP20O75691 2785 aaKnown RBP3.54□□□□□ -1.84
VPS13A-202ENST00000357409 DNAH10Q8IVF4 4471 aa3.54□□□□□ -1.84
VPS13A-202ENST00000357409 KRTAP15-1Q3LI76 137 aa3.53□□□□□ -1.84
VPS13A-202ENST00000357409 APCP25054 2843 aa3.53□□□□□ -1.84
VPS13A-202ENST00000357409 ITPR1Q14643 2758 aa3.52□□□□□ -1.85
VPS13A-202ENST00000357409 TRRAPQ9Y4A5 3859 aa3.52□□□□□ -1.85
VPS13A-202ENST00000357409 DNAH9Q9NYC9 4486 aa3.52□□□□□ -1.85
VPS13A-202ENST00000357409 LORP23490 312 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-202ENST00000357409 FBN1P35555 2871 aaKnown RBP3.5□□□□□ -1.85
VPS13A-202ENST00000357409 FAT1Q14517 4588 aa3.5□□□□□ -1.85
VPS13A-202ENST00000357409 NSD1Q96L73 2696 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-202ENST00000357409 TENM1Q9UKZ4 2725 aa3.49□□□□□ -1.85
VPS13A-202ENST00000357409 GCN1Q92616 2671 aaKnown RBP3.48□□□□□ -1.85
VPS13A-202ENST00000357409 ZNF292O60281 2723 aa3.48□□□□□ -1.85
VPS13A-202ENST00000357409 KRTAP3-1Q9BYR8 98 aa3.47□□□□□ -1.85
VPS13A-202ENST00000357409 ZNF469Q96JG9 3925 aaPredicted RBP3.47□□□□□ -1.85
VPS13A-202ENST00000357409 SACSQ9NZJ4 4579 aa3.46□□□□□ -1.86
VPS13A-202ENST00000357409 KRTAP12-1P59990 96 aa3.46□□□□□ -1.86
VPS13A-202ENST00000357409 PP632Q6XCG6 107 aa3.46□□□□□ -1.86
VPS13A-202ENST00000357409 ITPR2Q14571 2701 aa3.45□□□□□ -1.86
VPS13A-202ENST00000357409 KRTAP13-4Q3LI77 160 aa3.44□□□□□ -1.86
VPS13A-202ENST00000357409 DNAH17Q9UFH2 4485 aa3.43□□□□□ -1.86
VPS13A-202ENST00000357409 NOTCH1P46531 2555 aa3.43□□□□□ -1.86
VPS13A-202ENST00000357409 IGSF10Q6WRI0 2623 aa3.43□□□□□ -1.86
VPS13A-202ENST00000357409 NIPBLQ6KC79 2804 aaeCLIP3.42□□□□□ -1.86
VPS13A-202ENST00000357409 DNHD1Q96M86 4753 aa3.42□□□□□ -1.86
VPS13A-202ENST00000357409 DNAH11Q96DT5 4516 aa3.41□□□□□ -1.86
VPS13A-202ENST00000357409 DNAH8Q96JB1 4490 aa3.4□□□□□ -1.87
VPS13A-202ENST00000357409 PKD1L1Q8TDX9 2849 aa3.4□□□□□ -1.87
VPS13A-202ENST00000357409 VPS13DQ5THJ4 4388 aa3.39□□□□□ -1.87
VPS13A-202ENST00000357409 DNAH1Q9P2D7 4330 aa3.39□□□□□ -1.87
VPS13A-202ENST00000357409 NF1P21359 2839 aa3.38□□□□□ -1.87
VPS13A-202ENST00000357409 FRAS1Q86XX4 4008 aa3.37□□□□□ -1.87
VPS13A-202ENST00000357409 PLECQ15149 4684 aaKnown RBP3.36□□□□□ -1.87
VPS13A-202ENST00000357409 ZANQ9Y493 2812 aa3.35□□□□□ -1.87
VPS13A-202ENST00000357409 AKAP9Q99996 3911 aa3.35□□□□□ -1.87
VPS13A-202ENST00000357409 MT1HL1P0DM35 61 aa3.32□□□□□ -1.88
VPS13A-202ENST00000357409 VWFP04275 2813 aa3.31□□□□□ -1.88
VPS13A-202ENST00000357409 LRP1BQ9NZR2 4599 aa3.3□□□□□ -1.88
VPS13A-202ENST00000357409 FLNCQ14315 2725 aa3.29□□□□□ -1.88
VPS13A-202ENST00000357409 DNAH2Q9P225 4427 aa3.28□□□□□ -1.88
VPS13A-202ENST00000357409 DNAH5Q8TE73 4624 aa3.28□□□□□ -1.88
VPS13A-202ENST00000357409 KRTAP10-5P60370 271 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms