RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 CRYBG3Q68DQ2 2970 aa7.3□□□□□ -1.24
COLCA1-201ENST00000355430 NSD1Q96L73 2696 aaPredicted RBP7.29□□□□□ -1.24
COLCA1-201ENST00000355430 PRAC1Q96KF2 57 aa7.26□□□□□ -1.25
COLCA1-201ENST00000355430 SPINT4Q6UDR6 99 aa7.26□□□□□ -1.25
COLCA1-201ENST00000355430 A0A087X002 238 aa7.26□□□□□ -1.25
COLCA1-201ENST00000355430 NOTCH2NLQ7Z3S9 236 aa7.26□□□□□ -1.25
COLCA1-201ENST00000355430 SVEP1Q4LDE5 3571 aa7.24□□□□□ -1.25
COLCA1-201ENST00000355430 Q6ZRN7 208 aaPredicted RBP7.23□□□□□ -1.25
COLCA1-201ENST00000355430 CELSR2Q9HCU4 2923 aa7.21□□□□□ -1.26
COLCA1-201ENST00000355430 NF1P21359 2839 aa7.2□□□□□ -1.26
COLCA1-201ENST00000355430 MXRA5Q9NR99 2828 aa7.2□□□□□ -1.26
COLCA1-201ENST00000355430 LINC01554Q52M75 96 aa7.2□□□□□ -1.26
COLCA1-201ENST00000355430 DMAC1Q96GE9 116 aa7.19□□□□□ -1.26
COLCA1-201ENST00000355430 A8MU10 97 aa7.18□□□□□ -1.26
COLCA1-201ENST00000355430 CSAG1Q6PB30 78 aa7.16□□□□□ -1.26
COLCA1-201ENST00000355430 CELSR1Q9NYQ6 3014 aa7.16□□□□□ -1.26
COLCA1-201ENST00000355430 A0A0D9SG42 100 aa7.16□□□□□ -1.26
COLCA1-201ENST00000355430 KRTAP13-1Q8IUC0 172 aa7.16□□□□□ -1.26
COLCA1-201ENST00000355430 A0A1B0GU33 70 aa7.15□□□□□ -1.26
COLCA1-201ENST00000355430 STAB2Q8WWQ8 2551 aa7.15□□□□□ -1.27
COLCA1-201ENST00000355430 TENM4Q6N022 2769 aa7.14□□□□□ -1.27
COLCA1-201ENST00000355430 BSNQ9UPA5 3926 aa7.12□□□□□ -1.27
COLCA1-201ENST00000355430 S4R3F8 94 aa7.11□□□□□ -1.27
COLCA1-201ENST00000355430 SPENQ96T58 3664 aaKnown RBP7.11□□□□□ -1.27
COLCA1-201ENST00000355430 NIPBLQ6KC79 2804 aaeCLIP7.09□□□□□ -1.27
COLCA1-201ENST00000355430 A6NN06 94 aa7.08□□□□□ -1.28
COLCA1-201ENST00000355430 RPS29P62273 56 aaKnown RBP7.08□□□□□ -1.28
COLCA1-201ENST00000355430 CRIPTQ9P021 101 aa7.07□□□□□ -1.28
COLCA1-201ENST00000355430 CAMK2N1Q7Z7J9 78 aa7.04□□□□□ -1.28
COLCA1-201ENST00000355430 H3BS24 57 aa7.02□□□□□ -1.29
COLCA1-201ENST00000355430 ASB16-AS1Q495Z4 193 aa7.02□□□□□ -1.29
COLCA1-201ENST00000355430 SPATA8Q6RVD6 105 aa7□□□□□ -1.29
COLCA1-201ENST00000355430 KRTAP13-2Q52LG2 175 aa6.98□□□□□ -1.29
COLCA1-201ENST00000355430 H1FX-AS1Q4G0G2 97 aa6.94□□□□□ -1.3
COLCA1-201ENST00000355430 R4GN34 69 aa6.93□□□□□ -1.3
COLCA1-201ENST00000355430 ADM2Q7Z4H4 148 aa6.93□□□□□ -1.3
COLCA1-201ENST00000355430 DMBT1Q9UGM3 2413 aaPredicted RBP6.92□□□□□ -1.3
COLCA1-201ENST00000355430 CUBNO60494 3623 aa6.88□□□□□ -1.31
COLCA1-201ENST00000355430 LUZP6Q538Z0 58 aa6.87□□□□□ -1.31
COLCA1-201ENST00000355430 TENM3Q9P273 2699 aa6.86□□□□□ -1.31
COLCA1-201ENST00000355430 PDZD2O15018 2839 aa6.85□□□□□ -1.31
COLCA1-201ENST00000355430 NBPF19A0A087WUL8 3843 aa6.85□□□□□ -1.31
COLCA1-201ENST00000355430 CSMD2Q7Z408 3487 aa6.83□□□□□ -1.32
COLCA1-201ENST00000355430 RPL37P61927 97 aaKnown RBP6.83□□□□□ -1.32
COLCA1-201ENST00000355430 ANK3Q12955 4377 aaKnown RBP6.82□□□□□ -1.32
COLCA1-201ENST00000355430 A0A0A0MQY5 61 aa6.82□□□□□ -1.32
COLCA1-201ENST00000355430 ROMO1P60602 79 aa6.82□□□□□ -1.32
COLCA1-201ENST00000355430 PLAC4Q8WY50 150 aa6.82□□□□□ -1.32
COLCA1-201ENST00000355430 TENM1Q9UKZ4 2725 aa6.79□□□□□ -1.32
COLCA1-201ENST00000355430 M0QZ58 72 aa6.78□□□□□ -1.32
COLCA1-201ENST00000355430 ZFHX3Q15911 3703 aa6.76□□□□□ -1.33
COLCA1-201ENST00000355430 VWFP04275 2813 aa6.76□□□□□ -1.33
COLCA1-201ENST00000355430 FLG2Q5D862 2391 aaPredicted RBP6.75□□□□□ -1.33
COLCA1-201ENST00000355430 VPS13CQ709C8 3753 aa6.75□□□□□ -1.33
COLCA1-201ENST00000355430 KRTAP25-1Q3LHN0 102 aa6.73□□□□□ -1.33
COLCA1-201ENST00000355430 C20orf166-AS1Q96NR2 134 aa6.73□□□□□ -1.33
COLCA1-201ENST00000355430 KRTAP1-4P0C5Y4 121 aa6.71□□□□□ -1.34
COLCA1-201ENST00000355430 A0A1B0GVY2 172 aa6.69□□□□□ -1.34
COLCA1-201ENST00000355430 KRTAP16-1A8MUX0 517 aa6.68□□□□□ -1.34
COLCA1-201ENST00000355430 A8MUU9 505 aa6.65□□□□□ -1.34
COLCA1-201ENST00000355430 KRTAP13-3Q3SY46 172 aa6.65□□□□□ -1.35
COLCA1-201ENST00000355430 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
COLCA1-201ENST00000355430 OTOGQ6ZRI0 2925 aa6.61□□□□□ -1.35
COLCA1-201ENST00000355430 TENM2Q9NT68 2774 aa6.61□□□□□ -1.35
COLCA1-201ENST00000355430 XP32Q5T750 250 aa6.59□□□□□ -1.35
COLCA1-201ENST00000355430 H0YAA0 97 aa6.58□□□□□ -1.36
COLCA1-201ENST00000355430 TRRAPQ9Y4A5 3859 aa6.58□□□□□ -1.36
COLCA1-201ENST00000355430 PKD1L1Q8TDX9 2849 aa6.58□□□□□ -1.36
COLCA1-201ENST00000355430 AKAP9Q99996 3911 aa6.53□□□□□ -1.36
COLCA1-201ENST00000355430 FBN1P35555 2871 aaKnown RBP6.53□□□□□ -1.36
COLCA1-201ENST00000355430 TGP01266 2768 aa6.51□□□□□ -1.37
COLCA1-201ENST00000355430 ZNF469Q96JG9 3925 aaPredicted RBP6.47□□□□□ -1.37
COLCA1-201ENST00000355430 KRTAP10-8P60410 259 aa6.46□□□□□ -1.38
COLCA1-201ENST00000355430 C10orf95Q9H7T3 257 aa6.39□□□□□ -1.39
COLCA1-201ENST00000355430 NDUFAF8A1L188 74 aa6.37□□□□□ -1.39
COLCA1-201ENST00000355430 HUWE1Q7Z6Z7 4374 aaKnown RBP6.37□□□□□ -1.39
COLCA1-201ENST00000355430 KRTAP10-10P60014 251 aa6.36□□□□□ -1.39
COLCA1-201ENST00000355430 SRRM2Q9UQ35 2752 aaKnown RBP6.36□□□□□ -1.39
COLCA1-201ENST00000355430 P0C880 135 aa6.28□□□□□ -1.4
COLCA1-201ENST00000355430 KRTAP3-1Q9BYR8 98 aa6.26□□□□□ -1.41
COLCA1-201ENST00000355430 TNP1P09430 55 aa6.24□□□□□ -1.41
COLCA1-201ENST00000355430 FBN3Q75N90 2809 aa6.23□□□□□ -1.41
COLCA1-201ENST00000355430 PRO2289Q9P1D8 64 aa6.23□□□□□ -1.41
COLCA1-201ENST00000355430 CSMD3Q7Z407 3707 aa6.16□□□□□ -1.42
COLCA1-201ENST00000355430 MEGF8Q7Z7M0 2845 aa6.16□□□□□ -1.42
COLCA1-201ENST00000355430 KRTAP12-2P59991 146 aa6.13□□□□□ -1.43
COLCA1-201ENST00000355430 DNAH10Q8IVF4 4471 aa6.07□□□□□ -1.44
COLCA1-201ENST00000355430 KRTAP13-4Q3LI77 160 aa6.06□□□□□ -1.44
COLCA1-201ENST00000355430 DNAH9Q9NYC9 4486 aa6.06□□□□□ -1.44
COLCA1-201ENST00000355430 KRTAP10-6P60371 365 aaPredicted RBP6.03□□□□□ -1.44
COLCA1-201ENST00000355430 KRTAP12-1P59990 96 aa6.02□□□□□ -1.45
COLCA1-201ENST00000355430 PP632Q6XCG6 107 aa6□□□□□ -1.45
COLCA1-201ENST00000355430 MT1HL1P0DM35 61 aa6□□□□□ -1.45
COLCA1-201ENST00000355430 DNAH1Q9P2D7 4330 aa5.99□□□□□ -1.45
COLCA1-201ENST00000355430 COL7A1Q02388 2944 aa5.98□□□□□ -1.45
COLCA1-201ENST00000355430 PLECQ15149 4684 aaKnown RBP5.96□□□□□ -1.45
COLCA1-201ENST00000355430 KRTAP4-5Q9BYR2 181 aa5.95□□□□□ -1.46
COLCA1-201ENST00000355430 KRTAP3-3Q9BYR6 98 aa5.9□□□□□ -1.46
COLCA1-201ENST00000355430 KRTAP3-2Q9BYR7 98 aa5.88□□□□□ -1.47
COLCA1-201ENST00000355430 ALMS1Q8TCU4 4167 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms