RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 DNAH11Q96DT5 4516 aa13.1□□□□□ -0.31
NKX2-1-201ENST00000354822 NDUFS5O43920 106 aa13.07□□□□□ -0.32
NKX2-1-201ENST00000354822 KRTAP10-1P60331 282 aa13.04□□□□□ -0.32
NKX2-1-201ENST00000354822 Q1T7F1 81 aa13.04□□□□□ -0.32
NKX2-1-201ENST00000354822 SPINK6Q6UWN8 80 aa13.04□□□□□ -0.32
NKX2-1-201ENST00000354822 IGLV7-46A0A075B6I9 117 aa13.02□□□□□ -0.33
NKX2-1-201ENST00000354822 A0A087X002 238 aa13.01□□□□□ -0.33
NKX2-1-201ENST00000354822 LINC00336Q6ZUF6 198 aa13.01□□□□□ -0.33
NKX2-1-201ENST00000354822 NOTCH2NLQ7Z3S9 236 aa13.01□□□□□ -0.33
NKX2-1-201ENST00000354822 C8orf87E5RJ46 101 aa12.98□□□□□ -0.33
NKX2-1-201ENST00000354822 V9GYY9 64 aa12.94□□□□□ -0.34
NKX2-1-201ENST00000354822 PKD1P98161 4303 aa12.94□□□□□ -0.34
NKX2-1-201ENST00000354822 KRTAP13-2Q52LG2 175 aa12.93□□□□□ -0.34
NKX2-1-201ENST00000354822 PRO0628Q9UI54 55 aa12.93□□□□□ -0.34
NKX2-1-201ENST00000354822 PCOTHQ58A44 107 aa12.93□□□□□ -0.34
NKX2-1-201ENST00000354822 HYDINQ4G0P3 5121 aa12.92□□□□□ -0.34
NKX2-1-201ENST00000354822 FAT2Q9NYQ8 4349 aa12.91□□□□□ -0.34
NKX2-1-201ENST00000354822 LOC101927531A0A1B0GV80 90 aa12.89□□□□□ -0.35
NKX2-1-201ENST00000354822 LRP1BQ9NZR2 4599 aa12.86□□□□□ -0.35
NKX2-1-201ENST00000354822 LINC00313P59037 77 aa12.86□□□□□ -0.35
NKX2-1-201ENST00000354822 KRTAP1-4P0C5Y4 121 aa12.85□□□□□ -0.35
NKX2-1-201ENST00000354822 C1orf195Q5TG92 126 aa12.85□□□□□ -0.35
NKX2-1-201ENST00000354822 LIMD2Q9BT23 127 aa12.84□□□□□ -0.35
NKX2-1-201ENST00000354822 COA5Q86WW8 74 aa12.83□□□□□ -0.36
NKX2-1-201ENST00000354822 KRTAP13-3Q3SY46 172 aa12.83□□□□□ -0.36
NKX2-1-201ENST00000354822 BRK1Q8WUW1 75 aa12.82□□□□□ -0.36
NKX2-1-201ENST00000354822 Q5W150 140 aa12.81□□□□□ -0.36
NKX2-1-201ENST00000354822 Q8N9P0 234 aaPredicted RBP12.78□□□□□ -0.36
NKX2-1-201ENST00000354822 PSPHP1O15172 72 aa12.77□□□□□ -0.37
NKX2-1-201ENST00000354822 PLA2G1BP04054 148 aaKnown RBP12.76□□□□□ -0.37
NKX2-1-201ENST00000354822 C4orf48Q5BLP8 95 aa12.76□□□□□ -0.37
NKX2-1-201ENST00000354822 FAM229AH3BQW9 127 aa12.74□□□□□ -0.37
NKX2-1-201ENST00000354822 VPS13BQ7Z7G8 4022 aa12.73□□□□□ -0.37
NKX2-1-201ENST00000354822 SACSQ9NZJ4 4579 aa12.73□□□□□ -0.37
NKX2-1-201ENST00000354822 TYMSOSQ8TAI1 123 aa12.72□□□□□ -0.37
NKX2-1-201ENST00000354822 SPINK1P00995 79 aa12.7□□□□□ -0.38
NKX2-1-201ENST00000354822 A8MUN3 132 aa12.7□□□□□ -0.38
NKX2-1-201ENST00000354822 HRES1P13985 223 aa12.66□□□□□ -0.38
NKX2-1-201ENST00000354822 A0A1B0GVY2 172 aa12.66□□□□□ -0.38
NKX2-1-201ENST00000354822 KRTAP16-1A8MUX0 517 aa12.64□□□□□ -0.39
NKX2-1-201ENST00000354822 Q5VV11 94 aa12.64□□□□□ -0.39
NKX2-1-201ENST00000354822 PRR15LQ9BU68 103 aa12.6□□□□□ -0.39
NKX2-1-201ENST00000354822 RPS29P62273 56 aaKnown RBP12.59□□□□□ -0.39
NKX2-1-201ENST00000354822 IGKV2-30P06310 120 aa12.58□□□□□ -0.4
NKX2-1-201ENST00000354822 ACYP2P14621 99 aa12.58□□□□□ -0.4
NKX2-1-201ENST00000354822 SPAG11AQ6PDA7 123 aa12.57□□□□□ -0.4
NKX2-1-201ENST00000354822 LINC01558Q9Y6Z2 57 aa12.56□□□□□ -0.4
NKX2-1-201ENST00000354822 LINC00304Q8N9R0 145 aa12.54□□□□□ -0.4
NKX2-1-201ENST00000354822 CHKB-CPT1BH3BT56 60 aa12.53□□□□□ -0.4
NKX2-1-201ENST00000354822 RETNLBQ9BQ08 111 aa12.53□□□□□ -0.4
NKX2-1-201ENST00000354822 Q75L30 129 aa12.53□□□□□ -0.4
NKX2-1-201ENST00000354822 PRR26Q8N8Z3 221 aa12.52□□□□□ -0.41
NKX2-1-201ENST00000354822 DMAC1Q96GE9 116 aa12.52□□□□□ -0.41
NKX2-1-201ENST00000354822 SMR3BP02814 79 aaPredicted RBP12.5□□□□□ -0.41
NKX2-1-201ENST00000354822 PKHD1P08F94 4074 aa12.49□□□□□ -0.41
NKX2-1-201ENST00000354822 DYNC1H1Q14204 4646 aaKnown RBP12.49□□□□□ -0.41
NKX2-1-201ENST00000354822 RYR2Q92736 4967 aa12.42□□□□□ -0.42
NKX2-1-201ENST00000354822 IGKV2D-30A0A075B6S6 120 aa12.39□□□□□ -0.43
NKX2-1-201ENST00000354822 KRTAP10-4P60372 401 aaPredicted RBP12.39□□□□□ -0.43
NKX2-1-201ENST00000354822 A6NED7 52 aa12.37□□□□□ -0.43
NKX2-1-201ENST00000354822 APOBP04114 4563 aaKnown RBP12.32□□□□□ -0.44
NKX2-1-201ENST00000354822 C7orf65Q6ZTY9 151 aa12.28□□□□□ -0.44
NKX2-1-201ENST00000354822 LCA10Q71F78 164 aa12.27□□□□□ -0.45
NKX2-1-201ENST00000354822 CDC42SE1Q9NRR8 79 aa12.26□□□□□ -0.45
NKX2-1-201ENST00000354822 A8MU10 97 aa12.25□□□□□ -0.45
NKX2-1-201ENST00000354822 PKHD1L1Q86WI1 4243 aa12.24□□□□□ -0.45
NKX2-1-201ENST00000354822 ATP11AUNQ6ZP68 121 aa12.22□□□□□ -0.45
NKX2-1-201ENST00000354822 FAT1Q14517 4588 aa12.22□□□□□ -0.45
NKX2-1-201ENST00000354822 KMT2CQ8NEZ4 4911 aaKnown RBP12.21□□□□□ -0.46
NKX2-1-201ENST00000354822 C20orf166-AS1Q96NR2 134 aa12.2□□□□□ -0.46
NKX2-1-201ENST00000354822 A8MUU9 505 aa12.2□□□□□ -0.46
NKX2-1-201ENST00000354822 SPINK7P58062 85 aa12.18□□□□□ -0.46
NKX2-1-201ENST00000354822 PMAIP1Q13794 54 aa12.15□□□□□ -0.46
NKX2-1-201ENST00000354822 C9orf92A6NGG3 77 aa12.15□□□□□ -0.47
NKX2-1-201ENST00000354822 A0A1B0GU69 56 aa12.13□□□□□ -0.47
NKX2-1-201ENST00000354822 SPTSSBQ8NFR3 76 aa12.12□□□□□ -0.47
NKX2-1-201ENST00000354822 Q8N1X5 172 aa12.03□□□□□ -0.48
NKX2-1-201ENST00000354822 Q5VSD8 79 aa12.03□□□□□ -0.48
NKX2-1-201ENST00000354822 KRTAP10-8P60410 259 aa11.94□□□□□ -0.5
NKX2-1-201ENST00000354822 A6NN06 94 aa11.94□□□□□ -0.5
NKX2-1-201ENST00000354822 UQCR11O14957 56 aa11.92□□□□□ -0.5
NKX2-1-201ENST00000354822 FLG2Q5D862 2391 aaPredicted RBP11.91□□□□□ -0.5
NKX2-1-201ENST00000354822 SPATA8Q6RVD6 105 aa11.91□□□□□ -0.5
NKX2-1-201ENST00000354822 RYR3Q15413 4870 aa11.91□□□□□ -0.5
NKX2-1-201ENST00000354822 HSPG2P98160 4391 aa11.89□□□□□ -0.51
NKX2-1-201ENST00000354822 SEC61GP60059 68 aa11.87□□□□□ -0.51
NKX2-1-201ENST00000354822 KTN1-AS1Q86SY8 53 aa11.86□□□□□ -0.51
NKX2-1-201ENST00000354822 MIR22HGQ0VDD5 57 aa11.84□□□□□ -0.51
NKX2-1-201ENST00000354822 KRTAP3-1Q9BYR8 98 aa11.84□□□□□ -0.51
NKX2-1-201ENST00000354822 TNXBP22105 4242 aa11.83□□□□□ -0.52
NKX2-1-201ENST00000354822 RYR1P21817 5038 aa11.82□□□□□ -0.52
NKX2-1-201ENST00000354822 KRTAP17-1Q9BYP8 105 aa11.82□□□□□ -0.52
NKX2-1-201ENST00000354822 FAT3Q8TDW7 4589 aa11.81□□□□□ -0.52
NKX2-1-201ENST00000354822 COX6B2Q6YFQ2 88 aa11.76□□□□□ -0.53
NKX2-1-201ENST00000354822 LRP1Q07954 4544 aaKnown RBP11.73□□□□□ -0.53
NKX2-1-201ENST00000354822 RPL37P61927 97 aaKnown RBP11.69□□□□□ -0.54
NKX2-1-201ENST00000354822 MT1HL1P0DM35 61 aa11.64□□□□□ -0.55
NKX2-1-201ENST00000354822 XP32Q5T750 250 aa11.62□□□□□ -0.55
NKX2-1-201ENST00000354822 KIAA1109Q2LD37 5005 aa11.6□□□□□ -0.55
NKX2-1-201ENST00000354822 DMBT1Q9UGM3 2413 aaPredicted RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms