RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SMIM29Q86T20 159 aa5.45□□□□□ -1.54
USP4-202ENST00000351842 Q8NBF4 154 aa5.45□□□□□ -1.54
USP4-202ENST00000351842 J3QL48 77 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 ATP5EP56381 51 aaPredicted RBP5.44□□□□□ -1.54
USP4-202ENST00000351842 CXCL6P80162 114 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 RETNLBQ9BQ08 111 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 UBL5Q9BZL1 73 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 HERC1Q15751 4861 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 DEFB116Q30KQ4 102 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 PKHD1L1Q86WI1 4243 aa5.44□□□□□ -1.54
USP4-202ENST00000351842 RBM12B-AS1Q9P1G2 102 aa5.43□□□□□ -1.54
USP4-202ENST00000351842 IGLV5-48A0A075B6I7 105 aa5.43□□□□□ -1.54
USP4-202ENST00000351842 NDUFC1O43677 76 aa5.42□□□□□ -1.54
USP4-202ENST00000351842 IGFL1Q6UW32 110 aa5.42□□□□□ -1.54
USP4-202ENST00000351842 Q6ZVQ6 151 aa5.41□□□□□ -1.54
USP4-202ENST00000351842 A0A087WSZ3 146 aa5.4□□□□□ -1.54
USP4-202ENST00000351842 A0A1B0GW54 56 aa5.38□□□□□ -1.55
USP4-202ENST00000351842 LINC00304Q8N9R0 145 aa5.38□□□□□ -1.55
USP4-202ENST00000351842 H3BS24 57 aa5.37□□□□□ -1.55
USP4-202ENST00000351842 LINC00483Q53H64 154 aa5.37□□□□□ -1.55
USP4-202ENST00000351842 A0A1W2PNM2 257 aa5.36□□□□□ -1.55
USP4-202ENST00000351842 KTN1-AS1Q86SY8 53 aa5.36□□□□□ -1.55
USP4-202ENST00000351842 SPRR1BP22528 89 aa5.35□□□□□ -1.55
USP4-202ENST00000351842 PSPHP1O15172 72 aa5.35□□□□□ -1.55
USP4-202ENST00000351842 TMEM254Q8TBM7 123 aa5.34□□□□□ -1.56
USP4-202ENST00000351842 TNXBP22105 4242 aa5.33□□□□□ -1.56
USP4-202ENST00000351842 PRR4Q16378 134 aa5.33□□□□□ -1.56
USP4-202ENST00000351842 A8MU10 97 aa5.32□□□□□ -1.56
USP4-202ENST00000351842 Q1T7F1 81 aa5.31□□□□□ -1.56
USP4-202ENST00000351842 SSBP3-AS1Q7Z2R9 100 aa5.31□□□□□ -1.56
USP4-202ENST00000351842 MT1HL1P0DM35 61 aa5.31□□□□□ -1.56
USP4-202ENST00000351842 IGKV4-1P06312 121 aa5.31□□□□□ -1.56
USP4-202ENST00000351842 NREPQ16612 68 aa5.3□□□□□ -1.56
USP4-202ENST00000351842 Q8N9L7 120 aa5.3□□□□□ -1.56
USP4-202ENST00000351842 C8orf87E5RJ46 101 aa5.29□□□□□ -1.56
USP4-202ENST00000351842 TRAV22A0A0B4J277 110 aa5.28□□□□□ -1.56
USP4-202ENST00000351842 hDV103S1A0JD37 113 aa5.28□□□□□ -1.56
USP4-202ENST00000351842 C9orf92A6NGG3 77 aa5.28□□□□□ -1.56
USP4-202ENST00000351842 KRTAP10-8P60410 259 aa5.28□□□□□ -1.56
USP4-202ENST00000351842 OCR1Q9BZK8 76 aa5.27□□□□□ -1.57
USP4-202ENST00000351842 LRP2P98164 4655 aa5.27□□□□□ -1.57
USP4-202ENST00000351842 SPTSSBQ8NFR3 76 aa5.27□□□□□ -1.57
USP4-202ENST00000351842 LPAP08519 4548 aa5.26□□□□□ -1.57
USP4-202ENST00000351842 A8MUN3 132 aa5.26□□□□□ -1.57
USP4-202ENST00000351842 NDUFS5O43920 106 aa5.26□□□□□ -1.57
USP4-202ENST00000351842 SPINK1P00995 79 aa5.26□□□□□ -1.57
USP4-202ENST00000351842 IGLV8-61A0A075B6I0 122 aa5.25□□□□□ -1.57
USP4-202ENST00000351842 BPY2O14599 106 aa5.25□□□□□ -1.57
USP4-202ENST00000351842 IGHV6-1A0A0B4J1U7 121 aa5.24□□□□□ -1.57
USP4-202ENST00000351842 C1orf64Q8NEQ6 169 aa5.24□□□□□ -1.57
USP4-202ENST00000351842 KRTAP29-1A8MX34 341 aaPredicted RBP5.23□□□□□ -1.57
USP4-202ENST00000351842 LIMD2Q9BT23 127 aa5.23□□□□□ -1.57
USP4-202ENST00000351842 SPAG11AQ6PDA7 123 aa5.22□□□□□ -1.57
USP4-202ENST00000351842 CHKB-CPT1BH3BT56 60 aa5.21□□□□□ -1.58
USP4-202ENST00000351842 DSCR10P59022 87 aa5.2□□□□□ -1.58
USP4-202ENST00000351842 Q5VV11 94 aa5.2□□□□□ -1.58
USP4-202ENST00000351842 IGLV7-46A0A075B6I9 117 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 HCG22E2RYF7 251 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 WFDC13Q8IUB5 93 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 A6NN06 94 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 K7EQZ3 153 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 ATP11AUNQ6ZP68 121 aa5.19□□□□□ -1.58
USP4-202ENST00000351842 ZCCHC13Q8WW36 166 aaKnown RBP5.19□□□□□ -1.58
USP4-202ENST00000351842 LCA10Q71F78 164 aa5.18□□□□□ -1.58
USP4-202ENST00000351842 C7orf65Q6ZTY9 151 aa5.18□□□□□ -1.58
USP4-202ENST00000351842 NOTCH2NLQ7Z3S9 236 aa5.18□□□□□ -1.58
USP4-202ENST00000351842 LINC00472Q9H8W2 130 aa5.16□□□□□ -1.58
USP4-202ENST00000351842 UBR4Q5T4S7 5183 aa5.16□□□□□ -1.58
USP4-202ENST00000351842 Q96NJ1 140 aa5.16□□□□□ -1.58
USP4-202ENST00000351842 NDUFB1O75438 58 aa5.15□□□□□ -1.58
USP4-202ENST00000351842 MUC2Q02817 5179 aa5.14□□□□□ -1.59
USP4-202ENST00000351842 RNF213Q63HN8 5207 aa5.14□□□□□ -1.59
USP4-202ENST00000351842 PRR15LQ9BU68 103 aa5.12□□□□□ -1.59
USP4-202ENST00000351842 A6NED7 52 aa5.12□□□□□ -1.59
USP4-202ENST00000351842 LINC00313P59037 77 aa5.1□□□□□ -1.59
USP4-202ENST00000351842 CYP4F30PQ9H0H9 118 aa5.1□□□□□ -1.59
USP4-202ENST00000351842 HMCN2Q8NDA2 5059 aa5.1□□□□□ -1.59
USP4-202ENST00000351842 A8MWP4 228 aa5.1□□□□□ -1.59
USP4-202ENST00000351842 A0A1B0GVX0 72 aa5.1□□□□□ -1.59
USP4-202ENST00000351842 Q8N9P0 234 aaPredicted RBP5.09□□□□□ -1.59
USP4-202ENST00000351842 CDC42SE1Q9NRR8 79 aa5.07□□□□□ -1.6
USP4-202ENST00000351842 H3BPC8 53 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 ASB16-AS1Q495Z4 193 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 LINC01554Q52M75 96 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 CASC2Q6XLA1 102 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 C8orf17Q9NRJ1 99 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 PRAC1Q96KF2 57 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 RPS29P62273 56 aaKnown RBP5.06□□□□□ -1.6
USP4-202ENST00000351842 Q75L30 129 aa5.06□□□□□ -1.6
USP4-202ENST00000351842 SPANXA2-OT1Q8N9U9 137 aa5.03□□□□□ -1.6
USP4-202ENST00000351842 MMP24-AS1A0A0U1RRL7 71 aa5.02□□□□□ -1.61
USP4-202ENST00000351842 KRTAP13-3Q3SY46 172 aa5.02□□□□□ -1.61
USP4-202ENST00000351842 LINC00208Q96KT6 92 aa5.02□□□□□ -1.61
USP4-202ENST00000351842 XP32Q5T750 250 aa5.01□□□□□ -1.61
USP4-202ENST00000351842 LOC101927531A0A1B0GV80 90 aa5.01□□□□□ -1.61
USP4-202ENST00000351842 PCOTHQ58A44 107 aa5□□□□□ -1.61
USP4-202ENST00000351842 MRPL34Q9BQ48 92 aaKnown RBP4.99□□□□□ -1.61
USP4-202ENST00000351842 MP68P56378 58 aa4.98□□□□□ -1.61
USP4-202ENST00000351842 ADM2Q7Z4H4 148 aa4.98□□□□□ -1.61
USP4-202ENST00000351842 IGKV2D-30A0A075B6S6 120 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms