RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 Q6ZSA8 131 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 NOTCH2NLQ7Z3S9 236 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 PRO0628Q9UI54 55 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 DNAH5Q8TE73 4624 aa12.99□□□□□ -0.33
UPF3A-201ENST00000351487 DNAH11Q96DT5 4516 aa12.98□□□□□ -0.33
UPF3A-201ENST00000351487 ALMS1Q8TCU4 4167 aa12.97□□□□□ -0.33
UPF3A-201ENST00000351487 NDUFS5O43920 106 aa12.97□□□□□ -0.33
UPF3A-201ENST00000351487 IGLV7-46A0A075B6I9 117 aa12.96□□□□□ -0.33
UPF3A-201ENST00000351487 SPINK6Q6UWN8 80 aa12.93□□□□□ -0.34
UPF3A-201ENST00000351487 KRTAP10-1P60331 282 aa12.9□□□□□ -0.34
UPF3A-201ENST00000351487 PCOTHQ58A44 107 aa12.89□□□□□ -0.35
UPF3A-201ENST00000351487 V9GYY9 64 aa12.88□□□□□ -0.35
UPF3A-201ENST00000351487 BRK1Q8WUW1 75 aa12.86□□□□□ -0.35
UPF3A-201ENST00000351487 C8orf87E5RJ46 101 aa12.86□□□□□ -0.35
UPF3A-201ENST00000351487 KRTAP13-2Q52LG2 175 aa12.85□□□□□ -0.35
UPF3A-201ENST00000351487 PKD1P98161 4303 aa12.83□□□□□ -0.36
UPF3A-201ENST00000351487 KRTAP13-3Q3SY46 172 aa12.82□□□□□ -0.36
UPF3A-201ENST00000351487 COA5Q86WW8 74 aa12.82□□□□□ -0.36
UPF3A-201ENST00000351487 C1orf195Q5TG92 126 aa12.81□□□□□ -0.36
UPF3A-201ENST00000351487 FAT2Q9NYQ8 4349 aa12.8□□□□□ -0.36
UPF3A-201ENST00000351487 LOC101927531A0A1B0GV80 90 aa12.8□□□□□ -0.36
UPF3A-201ENST00000351487 PSPHP1O15172 72 aa12.79□□□□□ -0.36
UPF3A-201ENST00000351487 Q5W150 140 aa12.78□□□□□ -0.36
UPF3A-201ENST00000351487 Q8N9P0 234 aaPredicted RBP12.78□□□□□ -0.36
UPF3A-201ENST00000351487 LRP1BQ9NZR2 4599 aa12.76□□□□□ -0.37
UPF3A-201ENST00000351487 KRTAP1-4P0C5Y4 121 aa12.76□□□□□ -0.37
UPF3A-201ENST00000351487 LIMD2Q9BT23 127 aa12.74□□□□□ -0.37
UPF3A-201ENST00000351487 A8MUN3 132 aa12.73□□□□□ -0.37
UPF3A-201ENST00000351487 HYDINQ4G0P3 5121 aa12.72□□□□□ -0.37
UPF3A-201ENST00000351487 LINC00313P59037 77 aa12.72□□□□□ -0.37
UPF3A-201ENST00000351487 Q5VV11 94 aa12.69□□□□□ -0.38
UPF3A-201ENST00000351487 HRES1P13985 223 aa12.65□□□□□ -0.38
UPF3A-201ENST00000351487 FAM229AH3BQW9 127 aa12.64□□□□□ -0.39
UPF3A-201ENST00000351487 KRTAP16-1A8MUX0 517 aa12.61□□□□□ -0.39
UPF3A-201ENST00000351487 PRR15LQ9BU68 103 aa12.6□□□□□ -0.39
UPF3A-201ENST00000351487 VPS13BQ7Z7G8 4022 aa12.6□□□□□ -0.39
UPF3A-201ENST00000351487 PLA2G1BP04054 148 aaKnown RBP12.58□□□□□ -0.4
UPF3A-201ENST00000351487 TYMSOSQ8TAI1 123 aa12.55□□□□□ -0.4
UPF3A-201ENST00000351487 LINC01558Q9Y6Z2 57 aa12.54□□□□□ -0.4
UPF3A-201ENST00000351487 Q75L30 129 aa12.54□□□□□ -0.4
UPF3A-201ENST00000351487 SPINK1P00995 79 aa12.53□□□□□ -0.4
UPF3A-201ENST00000351487 C4orf48Q5BLP8 95 aa12.53□□□□□ -0.4
UPF3A-201ENST00000351487 IGKV2-30P06310 120 aa12.52□□□□□ -0.41
UPF3A-201ENST00000351487 CHKB-CPT1BH3BT56 60 aa12.52□□□□□ -0.41
UPF3A-201ENST00000351487 SPAG11AQ6PDA7 123 aa12.5□□□□□ -0.41
UPF3A-201ENST00000351487 ACYP2P14621 99 aa12.48□□□□□ -0.41
UPF3A-201ENST00000351487 DMAC1Q96GE9 116 aa12.48□□□□□ -0.41
UPF3A-201ENST00000351487 RETNLBQ9BQ08 111 aa12.47□□□□□ -0.41
UPF3A-201ENST00000351487 RPS29P62273 56 aaKnown RBP12.44□□□□□ -0.42
UPF3A-201ENST00000351487 SACSQ9NZJ4 4579 aa12.42□□□□□ -0.42
UPF3A-201ENST00000351487 PKHD1P08F94 4074 aa12.42□□□□□ -0.42
UPF3A-201ENST00000351487 PRR26Q8N8Z3 221 aa12.39□□□□□ -0.43
UPF3A-201ENST00000351487 LINC00304Q8N9R0 145 aa12.39□□□□□ -0.43
UPF3A-201ENST00000351487 A8MU10 97 aa12.38□□□□□ -0.43
UPF3A-201ENST00000351487 A6NED7 52 aa12.36□□□□□ -0.43
UPF3A-201ENST00000351487 A0A1B0GVY2 172 aa12.33□□□□□ -0.44
UPF3A-201ENST00000351487 LCA10Q71F78 164 aa12.32□□□□□ -0.44
UPF3A-201ENST00000351487 IGKV2D-30A0A075B6S6 120 aa12.3□□□□□ -0.44
UPF3A-201ENST00000351487 DYNC1H1Q14204 4646 aaKnown RBP12.29□□□□□ -0.44
UPF3A-201ENST00000351487 SMR3BP02814 79 aaPredicted RBP12.29□□□□□ -0.44
UPF3A-201ENST00000351487 CDC42SE1Q9NRR8 79 aa12.27□□□□□ -0.44
UPF3A-201ENST00000351487 KRTAP10-4P60372 401 aaPredicted RBP12.26□□□□□ -0.45
UPF3A-201ENST00000351487 SPINK7P58062 85 aa12.21□□□□□ -0.45
UPF3A-201ENST00000351487 ATP11AUNQ6ZP68 121 aa12.21□□□□□ -0.45
UPF3A-201ENST00000351487 C7orf65Q6ZTY9 151 aa12.18□□□□□ -0.46
UPF3A-201ENST00000351487 APOBP04114 4563 aaKnown RBP12.18□□□□□ -0.46
UPF3A-201ENST00000351487 PKHD1L1Q86WI1 4243 aa12.17□□□□□ -0.46
UPF3A-201ENST00000351487 PMAIP1Q13794 54 aa12.16□□□□□ -0.46
UPF3A-201ENST00000351487 SPTSSBQ8NFR3 76 aa12.13□□□□□ -0.47
UPF3A-201ENST00000351487 FAT1Q14517 4588 aa12.11□□□□□ -0.47
UPF3A-201ENST00000351487 C20orf166-AS1Q96NR2 134 aa12.1□□□□□ -0.47
UPF3A-201ENST00000351487 A8MUU9 505 aa12.09□□□□□ -0.47
UPF3A-201ENST00000351487 A0A1B0GU69 56 aa12.08□□□□□ -0.48
UPF3A-201ENST00000351487 C9orf92A6NGG3 77 aa12.04□□□□□ -0.48
UPF3A-201ENST00000351487 RYR2Q92736 4967 aa12.02□□□□□ -0.49
UPF3A-201ENST00000351487 A6NN06 94 aa12.01□□□□□ -0.49
UPF3A-201ENST00000351487 Q8N1X5 172 aa11.98□□□□□ -0.49
UPF3A-201ENST00000351487 KTN1-AS1Q86SY8 53 aa11.92□□□□□ -0.5
UPF3A-201ENST00000351487 FLG2Q5D862 2391 aaPredicted RBP11.91□□□□□ -0.5
UPF3A-201ENST00000351487 SPATA8Q6RVD6 105 aa11.88□□□□□ -0.51
UPF3A-201ENST00000351487 UQCR11O14957 56 aa11.86□□□□□ -0.51
UPF3A-201ENST00000351487 KMT2CQ8NEZ4 4911 aaKnown RBP11.83□□□□□ -0.52
UPF3A-201ENST00000351487 MIR22HGQ0VDD5 57 aa11.8□□□□□ -0.52
UPF3A-201ENST00000351487 KRTAP3-1Q9BYR8 98 aa11.8□□□□□ -0.52
UPF3A-201ENST00000351487 KRTAP10-8P60410 259 aa11.78□□□□□ -0.52
UPF3A-201ENST00000351487 SEC61GP60059 68 aa11.73□□□□□ -0.53
UPF3A-201ENST00000351487 Q5VSD8 79 aa11.72□□□□□ -0.53
UPF3A-201ENST00000351487 TNXBP22105 4242 aa11.71□□□□□ -0.53
UPF3A-201ENST00000351487 FAT3Q8TDW7 4589 aa11.7□□□□□ -0.54
UPF3A-201ENST00000351487 HSPG2P98160 4391 aa11.66□□□□□ -0.54
UPF3A-201ENST00000351487 COX6B2Q6YFQ2 88 aa11.66□□□□□ -0.54
UPF3A-201ENST00000351487 LRP1Q07954 4544 aaKnown RBP11.65□□□□□ -0.54
UPF3A-201ENST00000351487 RPL37P61927 97 aaKnown RBP11.57□□□□□ -0.56
UPF3A-201ENST00000351487 RBM12B-AS1Q9P1G2 102 aa11.52□□□□□ -0.56
UPF3A-201ENST00000351487 RYR1P21817 5038 aa11.51□□□□□ -0.57
UPF3A-201ENST00000351487 XP32Q5T750 250 aa11.51□□□□□ -0.57
UPF3A-201ENST00000351487 RYR3Q15413 4870 aa11.5□□□□□ -0.57
UPF3A-201ENST00000351487 KRTAP17-1Q9BYP8 105 aa11.5□□□□□ -0.57
UPF3A-201ENST00000351487 H0YAA0 97 aa11.49□□□□□ -0.57
UPF3A-201ENST00000351487 DMBT1Q9UGM3 2413 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms