RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 KRTAP10-1P60331 282 aa9.08□□□□□ -0.96
UPF3B-202ENST00000345865 Q6ZSA8 131 aa9.06□□□□□ -0.96
UPF3B-202ENST00000345865 SPINK6Q6UWN8 80 aa9.04□□□□□ -0.96
UPF3B-202ENST00000345865 CDK2AP2O75956 126 aa9.03□□□□□ -0.96
UPF3B-202ENST00000345865 PKHD1P08F94 4074 aa9.03□□□□□ -0.96
UPF3B-202ENST00000345865 LINC00336Q6ZUF6 198 aa9.03□□□□□ -0.96
UPF3B-202ENST00000345865 SPANXA2-OT1Q8N9U9 137 aa9.02□□□□□ -0.97
UPF3B-202ENST00000345865 TP53AIP1Q9HCN2 124 aa9.02□□□□□ -0.97
UPF3B-202ENST00000345865 MRPL34Q9BQ48 92 aaKnown RBP9.01□□□□□ -0.97
UPF3B-202ENST00000345865 SACSQ9NZJ4 4579 aa9.01□□□□□ -0.97
UPF3B-202ENST00000345865 NDUFS5O43920 106 aa9□□□□□ -0.97
UPF3B-202ENST00000345865 SSBP3-AS1Q7Z2R9 100 aa9□□□□□ -0.97
UPF3B-202ENST00000345865 CD164Q04900 197 aa8.99□□□□□ -0.97
UPF3B-202ENST00000345865 KRTAP13-2Q52LG2 175 aa8.99□□□□□ -0.97
UPF3B-202ENST00000345865 PCOTHQ58A44 107 aa8.97□□□□□ -0.97
UPF3B-202ENST00000345865 Q1T7F1 81 aa8.93□□□□□ -0.98
UPF3B-202ENST00000345865 IGLV7-46A0A075B6I9 117 aa8.93□□□□□ -0.98
UPF3B-202ENST00000345865 KRTAP1-4P0C5Y4 121 aa8.93□□□□□ -0.98
UPF3B-202ENST00000345865 Q5W150 140 aa8.92□□□□□ -0.98
UPF3B-202ENST00000345865 KRTAP13-3Q3SY46 172 aa8.89□□□□□ -0.99
UPF3B-202ENST00000345865 KRTAP21-3Q3LHN1 58 aa8.88□□□□□ -0.99
UPF3B-202ENST00000345865 C1orf195Q5TG92 126 aa8.88□□□□□ -0.99
UPF3B-202ENST00000345865 PSPHP1O15172 72 aa8.85□□□□□ -0.99
UPF3B-202ENST00000345865 Q8N9P0 234 aaPredicted RBP8.85□□□□□ -0.99
UPF3B-202ENST00000345865 DYNC1H1Q14204 4646 aaKnown RBP8.85□□□□□ -0.99
UPF3B-202ENST00000345865 COA5Q86WW8 74 aa8.85□□□□□ -0.99
UPF3B-202ENST00000345865 PRO0628Q9UI54 55 aa8.85□□□□□ -0.99
UPF3B-202ENST00000345865 C8orf87E5RJ46 101 aa8.84□□□□□ -0.99
UPF3B-202ENST00000345865 BRK1Q8WUW1 75 aa8.83□□□□□ -1
UPF3B-202ENST00000345865 LINC00313P59037 77 aa8.82□□□□□ -1
UPF3B-202ENST00000345865 PLA2G1BP04054 148 aaKnown RBP8.8□□□□□ -1
UPF3B-202ENST00000345865 A8MUN3 132 aa8.8□□□□□ -1
UPF3B-202ENST00000345865 LOC101927531A0A1B0GV80 90 aa8.79□□□□□ -1
UPF3B-202ENST00000345865 FAT1Q14517 4588 aa8.78□□□□□ -1
UPF3B-202ENST00000345865 KRTAP16-1A8MUX0 517 aa8.77□□□□□ -1
UPF3B-202ENST00000345865 APOBP04114 4563 aaKnown RBP8.76□□□□□ -1.01
UPF3B-202ENST00000345865 HRES1P13985 223 aa8.75□□□□□ -1.01
UPF3B-202ENST00000345865 RETNLBQ9BQ08 111 aa8.75□□□□□ -1.01
UPF3B-202ENST00000345865 TYMSOSQ8TAI1 123 aa8.75□□□□□ -1.01
UPF3B-202ENST00000345865 V9GYY9 64 aa8.75□□□□□ -1.01
UPF3B-202ENST00000345865 Q5VV11 94 aa8.74□□□□□ -1.01
UPF3B-202ENST00000345865 LIMD2Q9BT23 127 aa8.74□□□□□ -1.01
UPF3B-202ENST00000345865 FAM229AH3BQW9 127 aa8.7□□□□□ -1.02
UPF3B-202ENST00000345865 SMR3BP02814 79 aaPredicted RBP8.7□□□□□ -1.02
UPF3B-202ENST00000345865 PRR26Q8N8Z3 221 aa8.7□□□□□ -1.02
UPF3B-202ENST00000345865 C4orf48Q5BLP8 95 aa8.69□□□□□ -1.02
UPF3B-202ENST00000345865 PKHD1L1Q86WI1 4243 aa8.68□□□□□ -1.02
UPF3B-202ENST00000345865 SPINK1P00995 79 aa8.68□□□□□ -1.02
UPF3B-202ENST00000345865 RYR2Q92736 4967 aa8.68□□□□□ -1.02
UPF3B-202ENST00000345865 PRR15LQ9BU68 103 aa8.68□□□□□ -1.02
UPF3B-202ENST00000345865 A0A1B0GVY2 172 aa8.66□□□□□ -1.02
UPF3B-202ENST00000345865 SPAG11AQ6PDA7 123 aa8.66□□□□□ -1.02
UPF3B-202ENST00000345865 KMT2CQ8NEZ4 4911 aaKnown RBP8.66□□□□□ -1.02
UPF3B-202ENST00000345865 IGKV2-30P06310 120 aa8.65□□□□□ -1.02
UPF3B-202ENST00000345865 A8MU10 97 aa8.65□□□□□ -1.03
UPF3B-202ENST00000345865 LINC00304Q8N9R0 145 aa8.62□□□□□ -1.03
UPF3B-202ENST00000345865 KRTAP10-4P60372 401 aaPredicted RBP8.62□□□□□ -1.03
UPF3B-202ENST00000345865 CHKB-CPT1BH3BT56 60 aa8.61□□□□□ -1.03
UPF3B-202ENST00000345865 LINC01558Q9Y6Z2 57 aa8.6□□□□□ -1.03
UPF3B-202ENST00000345865 DMAC1Q96GE9 116 aa8.6□□□□□ -1.03
UPF3B-202ENST00000345865 ACYP2P14621 99 aa8.58□□□□□ -1.04
UPF3B-202ENST00000345865 Q75L30 129 aa8.58□□□□□ -1.04
UPF3B-202ENST00000345865 IGKV2D-30A0A075B6S6 120 aa8.56□□□□□ -1.04
UPF3B-202ENST00000345865 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
UPF3B-202ENST00000345865 LCA10Q71F78 164 aa8.51□□□□□ -1.05
UPF3B-202ENST00000345865 A6NED7 52 aa8.49□□□□□ -1.05
UPF3B-202ENST00000345865 C9orf92A6NGG3 77 aa8.46□□□□□ -1.06
UPF3B-202ENST00000345865 SPINK7P58062 85 aa8.46□□□□□ -1.06
UPF3B-202ENST00000345865 LRP1Q07954 4544 aaKnown RBP8.45□□□□□ -1.06
UPF3B-202ENST00000345865 TNXBP22105 4242 aa8.44□□□□□ -1.06
UPF3B-202ENST00000345865 HSPG2P98160 4391 aa8.42□□□□□ -1.06
UPF3B-202ENST00000345865 C7orf65Q6ZTY9 151 aa8.41□□□□□ -1.06
UPF3B-202ENST00000345865 CDC42SE1Q9NRR8 79 aa8.4□□□□□ -1.07
UPF3B-202ENST00000345865 FLG2Q5D862 2391 aaPredicted RBP8.39□□□□□ -1.07
UPF3B-202ENST00000345865 C20orf166-AS1Q96NR2 134 aa8.39□□□□□ -1.07
UPF3B-202ENST00000345865 RYR3Q15413 4870 aa8.39□□□□□ -1.07
UPF3B-202ENST00000345865 FAT3Q8TDW7 4589 aa8.39□□□□□ -1.07
UPF3B-202ENST00000345865 A8MUU9 505 aa8.38□□□□□ -1.07
UPF3B-202ENST00000345865 Q8N1X5 172 aa8.37□□□□□ -1.07
UPF3B-202ENST00000345865 SPTSSBQ8NFR3 76 aa8.36□□□□□ -1.07
UPF3B-202ENST00000345865 PMAIP1Q13794 54 aa8.34□□□□□ -1.07
UPF3B-202ENST00000345865 ATP11AUNQ6ZP68 121 aa8.33□□□□□ -1.08
UPF3B-202ENST00000345865 A0A1B0GU69 56 aa8.31□□□□□ -1.08
UPF3B-202ENST00000345865 RYR1P21817 5038 aa8.28□□□□□ -1.08
UPF3B-202ENST00000345865 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
UPF3B-202ENST00000345865 KRTAP17-1Q9BYP8 105 aa8.25□□□□□ -1.09
UPF3B-202ENST00000345865 KRTAP10-8P60410 259 aa8.25□□□□□ -1.09
UPF3B-202ENST00000345865 A6NN06 94 aa8.24□□□□□ -1.09
UPF3B-202ENST00000345865 Q5VSD8 79 aa8.24□□□□□ -1.09
UPF3B-202ENST00000345865 MYCBP2O75592 4640 aa8.23□□□□□ -1.09
UPF3B-202ENST00000345865 KIAA1109Q2LD37 5005 aa8.19□□□□□ -1.1
UPF3B-202ENST00000345865 DMBT1Q9UGM3 2413 aaPredicted RBP8.19□□□□□ -1.1
UPF3B-202ENST00000345865 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
UPF3B-202ENST00000345865 UQCR11O14957 56 aa8.13□□□□□ -1.11
UPF3B-202ENST00000345865 MIR22HGQ0VDD5 57 aa8.12□□□□□ -1.11
UPF3B-202ENST00000345865 KTN1-AS1Q86SY8 53 aa8.12□□□□□ -1.11
UPF3B-202ENST00000345865 EPPK1P58107 5090 aaKnown RBP8.08□□□□□ -1.12
UPF3B-202ENST00000345865 COX6B2Q6YFQ2 88 aa8.07□□□□□ -1.12
UPF3B-202ENST00000345865 MT1HL1P0DM35 61 aa8.04□□□□□ -1.12
UPF3B-202ENST00000345865 XP32Q5T750 250 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms