RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 ZFHX4Q86UP3 3567 aa4.26□□□□□ -1.73
VCAN-202ENST00000342785 KRTAP10-1P60331 282 aa4.26□□□□□ -1.73
VCAN-202ENST00000342785 A0A087X002 238 aa4.25□□□□□ -1.73
VCAN-202ENST00000342785 NOTCH2NLQ7Z3S9 236 aa4.25□□□□□ -1.73
VCAN-202ENST00000342785 LCE6AA0A183 80 aa4.24□□□□□ -1.73
VCAN-202ENST00000342785 LCA10Q71F78 164 aa4.24□□□□□ -1.73
VCAN-202ENST00000342785 PKD1L1Q8TDX9 2849 aa4.24□□□□□ -1.73
VCAN-202ENST00000342785 SPINK7P58062 85 aa4.23□□□□□ -1.73
VCAN-202ENST00000342785 OTOGQ6ZRI0 2925 aa4.23□□□□□ -1.73
VCAN-202ENST00000342785 KRTAP13-1Q8IUC0 172 aa4.21□□□□□ -1.73
VCAN-202ENST00000342785 DMDP11532 3685 aa4.21□□□□□ -1.74
VCAN-202ENST00000342785 TGP01266 2768 aa4.2□□□□□ -1.74
VCAN-202ENST00000342785 DMAC1Q96GE9 116 aa4.2□□□□□ -1.74
VCAN-202ENST00000342785 A0A1B0GU33 70 aa4.19□□□□□ -1.74
VCAN-202ENST00000342785 A0A0D9SG42 100 aa4.18□□□□□ -1.74
VCAN-202ENST00000342785 RBM12B-AS1Q9P1G2 102 aa4.17□□□□□ -1.74
VCAN-202ENST00000342785 J3QL48 77 aa4.16□□□□□ -1.74
VCAN-202ENST00000342785 PRAC1Q96KF2 57 aa4.16□□□□□ -1.74
VCAN-202ENST00000342785 TENM2Q9NT68 2774 aa4.16□□□□□ -1.74
VCAN-202ENST00000342785 SPINT4Q6UDR6 99 aa4.14□□□□□ -1.75
VCAN-202ENST00000342785 CRIPTQ9P021 101 aa4.14□□□□□ -1.75
VCAN-202ENST00000342785 ASB16-AS1Q495Z4 193 aa4.14□□□□□ -1.75
VCAN-202ENST00000342785 SMG1Q96Q15 3661 aaKnown RBP4.13□□□□□ -1.75
VCAN-202ENST00000342785 KRTAP13-2Q52LG2 175 aa4.13□□□□□ -1.75
VCAN-202ENST00000342785 COX6B2Q6YFQ2 88 aa4.13□□□□□ -1.75
VCAN-202ENST00000342785 LINC01554Q52M75 96 aa4.12□□□□□ -1.75
VCAN-202ENST00000342785 Q6ZSA8 131 aa4.11□□□□□ -1.75
VCAN-202ENST00000342785 CSMD1Q96PZ7 3565 aa4.1□□□□□ -1.75
VCAN-202ENST00000342785 A8MU10 97 aa4.1□□□□□ -1.75
VCAN-202ENST00000342785 SRRM2Q9UQ35 2752 aaKnown RBP4.09□□□□□ -1.75
VCAN-202ENST00000342785 CUBNO60494 3623 aa4.08□□□□□ -1.76
VCAN-202ENST00000342785 SVEP1Q4LDE5 3571 aa4.06□□□□□ -1.76
VCAN-202ENST00000342785 CSAG1Q6PB30 78 aa4.06□□□□□ -1.76
VCAN-202ENST00000342785 Q5VSD8 79 aa4.05□□□□□ -1.76
VCAN-202ENST00000342785 SPATA8Q6RVD6 105 aa4.05□□□□□ -1.76
VCAN-202ENST00000342785 S4R3F8 94 aa4.03□□□□□ -1.76
VCAN-202ENST00000342785 A6NN06 94 aa4.02□□□□□ -1.77
VCAN-202ENST00000342785 RPS29P62273 56 aaKnown RBP4.02□□□□□ -1.77
VCAN-202ENST00000342785 H1FX-AS1Q4G0G2 97 aa4.02□□□□□ -1.77
VCAN-202ENST00000342785 RPL37P61927 97 aaKnown RBP4.01□□□□□ -1.77
VCAN-202ENST00000342785 ZFHX3Q15911 3703 aa4□□□□□ -1.77
VCAN-202ENST00000342785 KRTAP1-4P0C5Y4 121 aa3.99□□□□□ -1.77
VCAN-202ENST00000342785 CSMD2Q7Z408 3487 aa3.97□□□□□ -1.77
VCAN-202ENST00000342785 FBN3Q75N90 2809 aa3.97□□□□□ -1.77
VCAN-202ENST00000342785 CAMK2N1Q7Z7J9 78 aa3.96□□□□□ -1.77
VCAN-202ENST00000342785 R4GN34 69 aa3.96□□□□□ -1.78
VCAN-202ENST00000342785 ADM2Q7Z4H4 148 aa3.96□□□□□ -1.78
VCAN-202ENST00000342785 SEC61BP60468 96 aaKnown RBP3.94□□□□□ -1.78
VCAN-202ENST00000342785 ROMO1P60602 79 aa3.94□□□□□ -1.78
VCAN-202ENST00000342785 A8MUU9 505 aa3.93□□□□□ -1.78
VCAN-202ENST00000342785 C20orf166-AS1Q96NR2 134 aa3.92□□□□□ -1.78
VCAN-202ENST00000342785 SPENQ96T58 3664 aaKnown RBP3.91□□□□□ -1.78
VCAN-202ENST00000342785 M0QZ58 72 aa3.9□□□□□ -1.78
VCAN-202ENST00000342785 NBPF19A0A087WUL8 3843 aa3.9□□□□□ -1.79
VCAN-202ENST00000342785 MEGF8Q7Z7M0 2845 aa3.9□□□□□ -1.79
VCAN-202ENST00000342785 KRTAP16-1A8MUX0 517 aa3.9□□□□□ -1.79
VCAN-202ENST00000342785 KRTAP21-3Q3LHN1 58 aa3.89□□□□□ -1.79
VCAN-202ENST00000342785 KRTAP13-3Q3SY46 172 aa3.86□□□□□ -1.79
VCAN-202ENST00000342785 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
VCAN-202ENST00000342785 M0R2T5 61 aa3.85□□□□□ -1.79
VCAN-202ENST00000342785 H3BS24 57 aa3.85□□□□□ -1.79
VCAN-202ENST00000342785 TRRAPQ9Y4A5 3859 aa3.85□□□□□ -1.79
VCAN-202ENST00000342785 KRTAP25-1Q3LHN0 102 aa3.85□□□□□ -1.79
VCAN-202ENST00000342785 COL7A1Q02388 2944 aa3.84□□□□□ -1.79
VCAN-202ENST00000342785 ANK3Q12955 4377 aaKnown RBP3.81□□□□□ -1.8
VCAN-202ENST00000342785 XP32Q5T750 250 aa3.8□□□□□ -1.8
VCAN-202ENST00000342785 H0YAA0 97 aa3.79□□□□□ -1.8
VCAN-202ENST00000342785 BSNQ9UPA5 3926 aa3.76□□□□□ -1.81
VCAN-202ENST00000342785 A0A1B0GVY2 172 aa3.7□□□□□ -1.82
VCAN-202ENST00000342785 KRTAP10-8P60410 259 aa3.7□□□□□ -1.82
VCAN-202ENST00000342785 P0C880 135 aa3.7□□□□□ -1.82
VCAN-202ENST00000342785 C10orf95Q9H7T3 257 aa3.69□□□□□ -1.82
VCAN-202ENST00000342785 TPRXLQ17RH7 258 aa3.67□□□□□ -1.82
VCAN-202ENST00000342785 PLAC4Q8WY50 150 aa3.67□□□□□ -1.82
VCAN-202ENST00000342785 A0A0A0MQY5 61 aa3.66□□□□□ -1.82
VCAN-202ENST00000342785 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
VCAN-202ENST00000342785 KRTAP3-1Q9BYR8 98 aa3.66□□□□□ -1.82
VCAN-202ENST00000342785 VPS13CQ709C8 3753 aa3.62□□□□□ -1.83
VCAN-202ENST00000342785 TNP1P09430 55 aa3.59□□□□□ -1.84
VCAN-202ENST00000342785 ZNF469Q96JG9 3925 aaPredicted RBP3.55□□□□□ -1.84
VCAN-202ENST00000342785 PP632Q6XCG6 107 aa3.53□□□□□ -1.84
VCAN-202ENST00000342785 KRTAP10-6P60371 365 aaPredicted RBP3.53□□□□□ -1.84
VCAN-202ENST00000342785 KRTAP12-2P59991 146 aa3.53□□□□□ -1.85
VCAN-202ENST00000342785 DNHD1Q96M86 4753 aa3.52□□□□□ -1.85
VCAN-202ENST00000342785 HUWE1Q7Z6Z7 4374 aaKnown RBP3.51□□□□□ -1.85
VCAN-202ENST00000342785 KRTAP13-4Q3LI77 160 aa3.51□□□□□ -1.85
VCAN-202ENST00000342785 KRTAP12-1P59990 96 aa3.5□□□□□ -1.85
VCAN-202ENST00000342785 CSMD3Q7Z407 3707 aa3.5□□□□□ -1.85
VCAN-202ENST00000342785 KRTAP10-4P60372 401 aaPredicted RBP3.49□□□□□ -1.85
VCAN-202ENST00000342785 MT1HL1P0DM35 61 aa3.46□□□□□ -1.86
VCAN-202ENST00000342785 DNAH5Q8TE73 4624 aa3.45□□□□□ -1.86
VCAN-202ENST00000342785 KRTAP10-10P60014 251 aa3.43□□□□□ -1.86
VCAN-202ENST00000342785 KRTAP3-3Q9BYR6 98 aa3.43□□□□□ -1.86
VCAN-202ENST00000342785 KRTAP3-2Q9BYR7 98 aa3.43□□□□□ -1.86
VCAN-202ENST00000342785 DNAH11Q96DT5 4516 aa3.42□□□□□ -1.86
VCAN-202ENST00000342785 PLECQ15149 4684 aaKnown RBP3.42□□□□□ -1.86
VCAN-202ENST00000342785 DNAH9Q9NYC9 4486 aa3.41□□□□□ -1.86
VCAN-202ENST00000342785 AKAP9Q99996 3911 aa3.39□□□□□ -1.87
VCAN-202ENST00000342785 FAT1Q14517 4588 aa3.34□□□□□ -1.87
VCAN-202ENST00000342785 DNAH1Q9P2D7 4330 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms