RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 PANO1I0J062 215 aa2.12□□□□□ -2.07
SYNE1-201ENST00000341594 ADGRG4Q8IZF6 3080 aa2.11□□□□□ -2.07
SYNE1-201ENST00000341594 A8MUU9 505 aa2.11□□□□□ -2.07
SYNE1-201ENST00000341594 J3QKU1 62 aa2.1□□□□□ -2.07
SYNE1-201ENST00000341594 LINC00304Q8N9R0 145 aa2.1□□□□□ -2.07
SYNE1-201ENST00000341594 PP632Q6XCG6 107 aa2.1□□□□□ -2.07
SYNE1-201ENST00000341594 KRTAP10-8P60410 259 aa2.09□□□□□ -2.07
SYNE1-201ENST00000341594 ZNF861PO60384 105 aa2.09□□□□□ -2.07
SYNE1-201ENST00000341594 MMP24-AS1A0A0U1RRL7 71 aa2.09□□□□□ -2.08
SYNE1-201ENST00000341594 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.09□□□□□ -2.08
SYNE1-201ENST00000341594 UTRNP46939 3433 aa2.08□□□□□ -2.08
SYNE1-201ENST00000341594 HTTP42858 3142 aa2.07□□□□□ -2.08
SYNE1-201ENST00000341594 M0QZ58 72 aa2.07□□□□□ -2.08
SYNE1-201ENST00000341594 R4GN34 69 aa2.05□□□□□ -2.08
SYNE1-201ENST00000341594 MKI67P46013 3256 aaKnown RBP2.05□□□□□ -2.08
SYNE1-201ENST00000341594 BOD1L1Q8NFC6 3051 aa2.05□□□□□ -2.08
SYNE1-201ENST00000341594 WDFY4Q6ZS81 3184 aa2.04□□□□□ -2.08
SYNE1-201ENST00000341594 KRTAP13-1Q8IUC0 172 aa2.04□□□□□ -2.08
SYNE1-201ENST00000341594 WWC2-AS2Q96NR7 200 aa2.03□□□□□ -2.08
SYNE1-201ENST00000341594 REV3LO60673 3130 aa2.02□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP13-3Q3SY46 172 aa2.02□□□□□ -2.09
SYNE1-201ENST00000341594 RANBP2P49792 3224 aaKnown RBP2.02□□□□□ -2.09
SYNE1-201ENST00000341594 CFAP47Q6ZTR5 3102 aa2.01□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP3-3Q9BYR6 98 aa2.01□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP3-2Q9BYR7 98 aa2.01□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP19-4Q3LI73 84 aa2.01□□□□□ -2.09
SYNE1-201ENST00000341594 H0YAA0 97 aa2.01□□□□□ -2.09
SYNE1-201ENST00000341594 NBDYA0A0U1RRE5 68 aa2□□□□□ -2.09
SYNE1-201ENST00000341594 INE1O15225 51 aa2□□□□□ -2.09
SYNE1-201ENST00000341594 S4R3F8 94 aa1.99□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP7-1Q8IUC3 87 aa1.99□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP10-1P60331 282 aa1.98□□□□□ -2.09
SYNE1-201ENST00000341594 XIRP2A4UGR9 3374 aa1.98□□□□□ -2.09
SYNE1-201ENST00000341594 KRTAP10-2P60368 255 aa1.98□□□□□ -2.09
SYNE1-201ENST00000341594 P0C880 135 aa1.98□□□□□ -2.09
SYNE1-201ENST00000341594 PRO2289Q9P1D8 64 aa1.96□□□□□ -2.1
SYNE1-201ENST00000341594 COL6A3P12111 3177 aa1.96□□□□□ -2.1
SYNE1-201ENST00000341594 TPRXLQ17RH7 258 aa1.96□□□□□ -2.1
SYNE1-201ENST00000341594 CELSR3Q9NYQ7 3312 aa1.96□□□□□ -2.1
SYNE1-201ENST00000341594 BRCA2P51587 3418 aa1.95□□□□□ -2.1
SYNE1-201ENST00000341594 MT3P25713 68 aa1.94□□□□□ -2.1
SYNE1-201ENST00000341594 Q6ZSA8 131 aa1.94□□□□□ -2.1
SYNE1-201ENST00000341594 KRTAP1-5Q9BYS1 174 aa1.94□□□□□ -2.1
SYNE1-201ENST00000341594 A0A087WTM6 91 aa1.94□□□□□ -2.1
SYNE1-201ENST00000341594 LAMA3Q16787 3333 aa1.92□□□□□ -2.1
SYNE1-201ENST00000341594 M0R2T5 61 aa1.92□□□□□ -2.1
SYNE1-201ENST00000341594 TNP1P09430 55 aa1.91□□□□□ -2.1
SYNE1-201ENST00000341594 SPEGQ15772 3267 aa1.9□□□□□ -2.11
SYNE1-201ENST00000341594 UNC80Q8N2C7 3258 aa1.89□□□□□ -2.11
SYNE1-201ENST00000341594 KRTAP1-3Q8IUG1 177 aa1.89□□□□□ -2.11
SYNE1-201ENST00000341594 AKAP9Q99996 3911 aa1.89□□□□□ -2.11
SYNE1-201ENST00000341594 KRTAP1-1Q07627 177 aa1.88□□□□□ -2.11
SYNE1-201ENST00000341594 Q5VSD8 79 aa1.88□□□□□ -2.11
SYNE1-201ENST00000341594 VCANP13611 3396 aa1.88□□□□□ -2.11
SYNE1-201ENST00000341594 Q6ZRN7 208 aaPredicted RBP1.87□□□□□ -2.11
SYNE1-201ENST00000341594 EYSQ5T1H1 3165 aa1.87□□□□□ -2.11
SYNE1-201ENST00000341594 KRTAP15-1Q3LI76 137 aa1.86□□□□□ -2.11
SYNE1-201ENST00000341594 ZFHX3Q15911 3703 aa1.86□□□□□ -2.11
SYNE1-201ENST00000341594 CDH23Q9H251 3354 aa1.86□□□□□ -2.11
SYNE1-201ENST00000341594 SZT2Q5T011 3432 aa1.86□□□□□ -2.11
SYNE1-201ENST00000341594 USP34Q70CQ2 3546 aa1.85□□□□□ -2.11
SYNE1-201ENST00000341594 KRTAP3-1Q9BYR8 98 aa1.85□□□□□ -2.11
SYNE1-201ENST00000341594 KRTAP13-2Q52LG2 175 aa1.84□□□□□ -2.11
SYNE1-201ENST00000341594 DNAH14Q0VDD8 3507 aa1.84□□□□□ -2.11
SYNE1-201ENST00000341594 CRCT1Q9UGL9 99 aa1.83□□□□□ -2.12
SYNE1-201ENST00000341594 XP32Q5T750 250 aa1.82□□□□□ -2.12
SYNE1-201ENST00000341594 WDFY3Q8IZQ1 3526 aa1.82□□□□□ -2.12
SYNE1-201ENST00000341594 NBPF19A0A087WUL8 3843 aa1.81□□□□□ -2.12
SYNE1-201ENST00000341594 LOC400499M0QZD8 3231 aa1.8□□□□□ -2.12
SYNE1-201ENST00000341594 KRTAP12-2P59991 146 aa1.8□□□□□ -2.12
SYNE1-201ENST00000341594 KRTAP13-4Q3LI77 160 aa1.8□□□□□ -2.12
SYNE1-201ENST00000341594 DCHS1Q96JQ0 3298 aa1.77□□□□□ -2.13
SYNE1-201ENST00000341594 CMYA5Q8N3K9 4069 aa1.77□□□□□ -2.13
SYNE1-201ENST00000341594 SPTBN5Q9NRC6 3674 aaKnown RBP1.76□□□□□ -2.13
SYNE1-201ENST00000341594 LORP23490 312 aaPredicted RBP1.75□□□□□ -2.13
SYNE1-201ENST00000341594 DNAH1Q9P2D7 4330 aa1.74□□□□□ -2.13
SYNE1-201ENST00000341594 KRTAP21-3Q3LHN1 58 aa1.74□□□□□ -2.13
SYNE1-201ENST00000341594 KRTAP10-6P60371 365 aaPredicted RBP1.73□□□□□ -2.13
SYNE1-201ENST00000341594 HUWE1Q7Z6Z7 4374 aaKnown RBP1.73□□□□□ -2.13
SYNE1-201ENST00000341594 ALMS1Q8TCU4 4167 aa1.73□□□□□ -2.13
SYNE1-201ENST00000341594 DMDP11532 3685 aa1.73□□□□□ -2.13
SYNE1-201ENST00000341594 KRTAP12-1P59990 96 aa1.72□□□□□ -2.13
SYNE1-201ENST00000341594 KRTAP1-4P0C5Y4 121 aa1.72□□□□□ -2.13
SYNE1-201ENST00000341594 MYO15AQ9UKN7 3530 aa1.72□□□□□ -2.13
SYNE1-201ENST00000341594 TRRAPQ9Y4A5 3859 aa1.72□□□□□ -2.13
SYNE1-201ENST00000341594 DNAH11Q96DT5 4516 aa1.72□□□□□ -2.13
SYNE1-201ENST00000341594 ASPMQ8IZT6 3477 aa1.71□□□□□ -2.14
SYNE1-201ENST00000341594 LAMA5O15230 3695 aa1.71□□□□□ -2.14
SYNE1-201ENST00000341594 DNAH3Q8TD57 4116 aa1.71□□□□□ -2.14
SYNE1-201ENST00000341594 BSNQ9UPA5 3926 aa1.7□□□□□ -2.14
SYNE1-201ENST00000341594 SMG1Q96Q15 3661 aaKnown RBP1.69□□□□□ -2.14
SYNE1-201ENST00000341594 KRTAP4-5Q9BYR2 181 aa1.68□□□□□ -2.14
SYNE1-201ENST00000341594 LCE2DQ5TA82 110 aaPredicted RBP1.68□□□□□ -2.14
SYNE1-201ENST00000341594 DNAH2Q9P225 4427 aa1.68□□□□□ -2.14
SYNE1-201ENST00000341594 KRTAP10-10P60014 251 aa1.68□□□□□ -2.14
SYNE1-201ENST00000341594 SPRR5A0A1B0GTR4 108 aa1.68□□□□□ -2.14
SYNE1-201ENST00000341594 LYSTQ99698 3801 aa1.67□□□□□ -2.14
SYNE1-201ENST00000341594 DNAH10Q8IVF4 4471 aa1.67□□□□□ -2.14
SYNE1-201ENST00000341594 SPENQ96T58 3664 aaKnown RBP1.66□□□□□ -2.14
SYNE1-201ENST00000341594 DNAH7Q8WXX0 4024 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms