RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ASB16-AS1Q495Z4 193 aa4.68□□□□□ -1.66
HMGB1-203ENST00000341423 ZZEF1O43149 2961 aa4.68□□□□□ -1.66
HMGB1-203ENST00000341423 DMAC1Q96GE9 116 aa4.68□□□□□ -1.66
HMGB1-203ENST00000341423 KRTAP13-2Q52LG2 175 aa4.67□□□□□ -1.66
HMGB1-203ENST00000341423 Q8N9P0 234 aaPredicted RBP4.67□□□□□ -1.66
HMGB1-203ENST00000341423 SMG1Q96Q15 3661 aaKnown RBP4.67□□□□□ -1.66
HMGB1-203ENST00000341423 PSPHP1O15172 72 aa4.66□□□□□ -1.66
HMGB1-203ENST00000341423 COA5Q86WW8 74 aa4.66□□□□□ -1.66
HMGB1-203ENST00000341423 MIR22HGQ0VDD5 57 aa4.65□□□□□ -1.66
HMGB1-203ENST00000341423 MXRA5Q9NR99 2828 aa4.65□□□□□ -1.67
HMGB1-203ENST00000341423 NBEAQ8NFP9 2946 aa4.64□□□□□ -1.67
HMGB1-203ENST00000341423 DMXL1Q9Y485 3027 aa4.64□□□□□ -1.67
HMGB1-203ENST00000341423 YPEL4Q96NS1 127 aa4.63□□□□□ -1.67
HMGB1-203ENST00000341423 VWFP04275 2813 aa4.63□□□□□ -1.67
HMGB1-203ENST00000341423 CCDC179H3BU77 68 aa4.62□□□□□ -1.67
HMGB1-203ENST00000341423 Q5XG85 94 aa4.61□□□□□ -1.67
HMGB1-203ENST00000341423 CELSR2Q9HCU4 2923 aa4.61□□□□□ -1.67
HMGB1-203ENST00000341423 LRBAP50851 2863 aa4.59□□□□□ -1.67
HMGB1-203ENST00000341423 A6NN06 94 aa4.59□□□□□ -1.67
HMGB1-203ENST00000341423 DCHS2Q6V1P9 2916 aa4.59□□□□□ -1.67
HMGB1-203ENST00000341423 ASPMQ8IZT6 3477 aa4.58□□□□□ -1.68
HMGB1-203ENST00000341423 CYP4F30PQ9H0H9 118 aa4.58□□□□□ -1.68
HMGB1-203ENST00000341423 Q5VV11 94 aa4.58□□□□□ -1.68
HMGB1-203ENST00000341423 ADGRG4Q8IZF6 3080 aa4.57□□□□□ -1.68
HMGB1-203ENST00000341423 PDZD2O15018 2839 aa4.57□□□□□ -1.68
HMGB1-203ENST00000341423 MMP24-AS1A0A0U1RRL7 71 aa4.57□□□□□ -1.68
HMGB1-203ENST00000341423 TGP01266 2768 aa4.57□□□□□ -1.68
HMGB1-203ENST00000341423 PMAIP1Q13794 54 aa4.56□□□□□ -1.68
HMGB1-203ENST00000341423 TNP1P09430 55 aa4.56□□□□□ -1.68
HMGB1-203ENST00000341423 LINC00472Q9H8W2 130 aa4.56□□□□□ -1.68
HMGB1-203ENST00000341423 LOC400499M0QZD8 3231 aa4.55□□□□□ -1.68
HMGB1-203ENST00000341423 KRTAP13-3Q3SY46 172 aa4.55□□□□□ -1.68
HMGB1-203ENST00000341423 PRO0628Q9UI54 55 aa4.54□□□□□ -1.68
HMGB1-203ENST00000341423 RELNP78509 3460 aa4.54□□□□□ -1.68
HMGB1-203ENST00000341423 DCHS1Q96JQ0 3298 aa4.54□□□□□ -1.68
HMGB1-203ENST00000341423 CELSR1Q9NYQ6 3014 aa4.52□□□□□ -1.69
HMGB1-203ENST00000341423 EIF4EBP3O60516 100 aaPredicted RBP4.51□□□□□ -1.69
HMGB1-203ENST00000341423 Q1T7F1 81 aa4.51□□□□□ -1.69
HMGB1-203ENST00000341423 LAMA5O15230 3695 aa4.5□□□□□ -1.69
HMGB1-203ENST00000341423 KRTAP1-4P0C5Y4 121 aa4.49□□□□□ -1.69
HMGB1-203ENST00000341423 LINC00310P59036 64 aa4.49□□□□□ -1.69
HMGB1-203ENST00000341423 KRTAP11-1Q8IUC1 163 aa4.45□□□□□ -1.7
HMGB1-203ENST00000341423 SPANXA2-OT1Q8N9U9 137 aa4.45□□□□□ -1.7
HMGB1-203ENST00000341423 KRTAP13-1Q8IUC0 172 aa4.42□□□□□ -1.7
HMGB1-203ENST00000341423 NOTCH2NLQ7Z3S9 236 aa4.42□□□□□ -1.7
HMGB1-203ENST00000341423 KRTAP4-16G5E9R7 235 aaPredicted RBP4.4□□□□□ -1.7
HMGB1-203ENST00000341423 NBPF19A0A087WUL8 3843 aa4.4□□□□□ -1.7
HMGB1-203ENST00000341423 KRTAP4-5Q9BYR2 181 aa4.38□□□□□ -1.71
HMGB1-203ENST00000341423 P0C880 135 aa4.36□□□□□ -1.71
HMGB1-203ENST00000341423 ZANQ9Y493 2812 aa4.36□□□□□ -1.71
HMGB1-203ENST00000341423 LORP23490 312 aaPredicted RBP4.34□□□□□ -1.71
HMGB1-203ENST00000341423 AKAP9Q99996 3911 aa4.32□□□□□ -1.72
HMGB1-203ENST00000341423 FBN1P35555 2871 aaKnown RBP4.31□□□□□ -1.72
HMGB1-203ENST00000341423 PRO0461Q9UI25 63 aa4.31□□□□□ -1.72
HMGB1-203ENST00000341423 H3BS24 57 aa4.28□□□□□ -1.72
HMGB1-203ENST00000341423 SMCPP49901 116 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-203ENST00000341423 KRTAP7-1Q8IUC3 87 aa4.26□□□□□ -1.73
HMGB1-203ENST00000341423 CUBNO60494 3623 aa4.24□□□□□ -1.73
HMGB1-203ENST00000341423 MT1HL1P0DM35 61 aa4.23□□□□□ -1.73
HMGB1-203ENST00000341423 OTOGQ6ZRI0 2925 aa4.22□□□□□ -1.73
HMGB1-203ENST00000341423 SPATA8Q6RVD6 105 aa4.22□□□□□ -1.73
HMGB1-203ENST00000341423 VPS13CQ709C8 3753 aa4.22□□□□□ -1.73
HMGB1-203ENST00000341423 ROMO1P60602 79 aa4.21□□□□□ -1.74
HMGB1-203ENST00000341423 CSMD1Q96PZ7 3565 aa4.21□□□□□ -1.74
HMGB1-203ENST00000341423 OCR1Q9BZK8 76 aa4.19□□□□□ -1.74
HMGB1-203ENST00000341423 H0YAA0 97 aa4.18□□□□□ -1.74
HMGB1-203ENST00000341423 KTN1-AS1Q86SY8 53 aa4.17□□□□□ -1.74
HMGB1-203ENST00000341423 BSNQ9UPA5 3926 aa4.17□□□□□ -1.74
HMGB1-203ENST00000341423 CSMD2Q7Z408 3487 aa4.16□□□□□ -1.74
HMGB1-203ENST00000341423 PP632Q6XCG6 107 aa4.15□□□□□ -1.75
HMGB1-203ENST00000341423 SVEP1Q4LDE5 3571 aa4.14□□□□□ -1.75
HMGB1-203ENST00000341423 ZNF469Q96JG9 3925 aaPredicted RBP4.13□□□□□ -1.75
HMGB1-203ENST00000341423 HRNRQ86YZ3 2850 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-203ENST00000341423 A0A0A0MQY5 61 aa4.1□□□□□ -1.75
HMGB1-203ENST00000341423 COL7A1Q02388 2944 aa4.08□□□□□ -1.76
HMGB1-203ENST00000341423 LINC01558Q9Y6Z2 57 aa4.08□□□□□ -1.76
HMGB1-203ENST00000341423 KRTAP8-1Q8IUC2 63 aa4.07□□□□□ -1.76
HMGB1-203ENST00000341423 CSMD3Q7Z407 3707 aa4.07□□□□□ -1.76
HMGB1-203ENST00000341423 CYSTM1Q9H1C7 97 aa4.06□□□□□ -1.76
HMGB1-203ENST00000341423 KRTAP25-1Q3LHN0 102 aa4.05□□□□□ -1.76
HMGB1-203ENST00000341423 KRTAP17-1Q9BYP8 105 aa4.02□□□□□ -1.77
HMGB1-203ENST00000341423 C10orf95Q9H7T3 257 aa4□□□□□ -1.77
HMGB1-203ENST00000341423 MEGF8Q7Z7M0 2845 aa4□□□□□ -1.77
HMGB1-203ENST00000341423 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
HMGB1-203ENST00000341423 A8MU10 97 aa3.95□□□□□ -1.78
HMGB1-203ENST00000341423 KRTAP16-1A8MUX0 517 aa3.95□□□□□ -1.78
HMGB1-203ENST00000341423 KRTAP9-6A0A140TA67 174 aa3.94□□□□□ -1.78
HMGB1-203ENST00000341423 SPRR2FQ96RM1 72 aa3.9□□□□□ -1.79
HMGB1-203ENST00000341423 LYSTQ99698 3801 aa3.89□□□□□ -1.79
HMGB1-203ENST00000341423 TRRAPQ9Y4A5 3859 aa3.88□□□□□ -1.79
HMGB1-203ENST00000341423 KRTAP10-6P60371 365 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-203ENST00000341423 KRTAP10-4P60372 401 aaPredicted RBP3.85□□□□□ -1.79
HMGB1-203ENST00000341423 KRTAP9-2Q9BYQ4 174 aa3.84□□□□□ -1.79
HMGB1-203ENST00000341423 PRAC1Q96KF2 57 aa3.84□□□□□ -1.8
HMGB1-203ENST00000341423 KRTAP10-12P60413 245 aa3.82□□□□□ -1.8
HMGB1-203ENST00000341423 KRTAP15-1Q3LI76 137 aa3.82□□□□□ -1.8
HMGB1-203ENST00000341423 SPRR2EP22531 72 aa3.81□□□□□ -1.8
HMGB1-203ENST00000341423 SPRR2BP35325 72 aa3.81□□□□□ -1.8
HMGB1-203ENST00000341423 SPRR2AP35326 72 aa3.81□□□□□ -1.8
HMGB1-203ENST00000341423 DNHD1Q96M86 4753 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms