RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 DYNC1H1Q14204 4646 aaKnown RBP6.12□□□□□ -1.43
LIMA1-201ENST00000341247 C8orf17Q9NRJ1 99 aa6.12□□□□□ -1.43
LIMA1-201ENST00000341247 C1orf64Q8NEQ6 169 aa6.12□□□□□ -1.43
LIMA1-201ENST00000341247 TRAV22A0A0B4J277 110 aa6.11□□□□□ -1.43
LIMA1-201ENST00000341247 RYR2Q92736 4967 aa6.11□□□□□ -1.43
LIMA1-201ENST00000341247 PCOTHQ58A44 107 aa6.1□□□□□ -1.43
LIMA1-201ENST00000341247 A0A1B0GVX0 72 aa6.1□□□□□ -1.43
LIMA1-201ENST00000341247 SVIPQ8NHG7 77 aa6.08□□□□□ -1.44
LIMA1-201ENST00000341247 APOBP04114 4563 aaKnown RBP6.07□□□□□ -1.44
LIMA1-201ENST00000341247 RYR3Q15413 4870 aa6.06□□□□□ -1.44
LIMA1-201ENST00000341247 MRPL34Q9BQ48 92 aaKnown RBP6.04□□□□□ -1.44
LIMA1-201ENST00000341247 KRTAP13-2Q52LG2 175 aa6.04□□□□□ -1.44
LIMA1-201ENST00000341247 RETNLBQ9BQ08 111 aa6.04□□□□□ -1.44
LIMA1-201ENST00000341247 LINC00336Q6ZUF6 198 aa6.03□□□□□ -1.44
LIMA1-201ENST00000341247 Q6ZSA8 131 aa6.01□□□□□ -1.45
LIMA1-201ENST00000341247 ASB16-AS1Q495Z4 193 aa6.01□□□□□ -1.45
LIMA1-201ENST00000341247 SSBP3-AS1Q7Z2R9 100 aa6.01□□□□□ -1.45
LIMA1-201ENST00000341247 PSPHP1O15172 72 aa6□□□□□ -1.45
LIMA1-201ENST00000341247 SMR3BP02814 79 aaPredicted RBP6□□□□□ -1.45
LIMA1-201ENST00000341247 H3BPC8 53 aa6□□□□□ -1.45
LIMA1-201ENST00000341247 CYP4F30PQ9H0H9 118 aa6□□□□□ -1.45
LIMA1-201ENST00000341247 TP53AIP1Q9HCN2 124 aa6□□□□□ -1.45
LIMA1-201ENST00000341247 CD164Q04900 197 aa6□□□□□ -1.45
LIMA1-201ENST00000341247 Q5W150 140 aa5.99□□□□□ -1.45
LIMA1-201ENST00000341247 BRK1Q8WUW1 75 aa5.98□□□□□ -1.45
LIMA1-201ENST00000341247 PLA2G1BP04054 148 aaKnown RBP5.98□□□□□ -1.45
LIMA1-201ENST00000341247 PKHD1L1Q86WI1 4243 aa5.97□□□□□ -1.45
LIMA1-201ENST00000341247 KRTAP1-4P0C5Y4 121 aa5.96□□□□□ -1.45
LIMA1-201ENST00000341247 C1orf195Q5TG92 126 aa5.96□□□□□ -1.46
LIMA1-201ENST00000341247 KRTAP21-3Q3LHN1 58 aa5.95□□□□□ -1.46
LIMA1-201ENST00000341247 SPANXA2-OT1Q8N9U9 137 aa5.95□□□□□ -1.46
LIMA1-201ENST00000341247 LINC00313P59037 77 aa5.95□□□□□ -1.46
LIMA1-201ENST00000341247 COA5Q86WW8 74 aa5.94□□□□□ -1.46
LIMA1-201ENST00000341247 TYMSOSQ8TAI1 123 aa5.93□□□□□ -1.46
LIMA1-201ENST00000341247 LRP1Q07954 4544 aaKnown RBP5.93□□□□□ -1.46
LIMA1-201ENST00000341247 IGLV7-46A0A075B6I9 117 aa5.93□□□□□ -1.46
LIMA1-201ENST00000341247 C4orf48Q5BLP8 95 aa5.93□□□□□ -1.46
LIMA1-201ENST00000341247 A8MUN3 132 aa5.92□□□□□ -1.46
LIMA1-201ENST00000341247 PRR26Q8N8Z3 221 aa5.92□□□□□ -1.46
LIMA1-201ENST00000341247 Q8N9P0 234 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-201ENST00000341247 Q1T7F1 81 aa5.9□□□□□ -1.47
LIMA1-201ENST00000341247 C8orf87E5RJ46 101 aa5.89□□□□□ -1.47
LIMA1-201ENST00000341247 HSPG2P98160 4391 aa5.89□□□□□ -1.47
LIMA1-201ENST00000341247 LOC101927531A0A1B0GV80 90 aa5.87□□□□□ -1.47
LIMA1-201ENST00000341247 SPAG11AQ6PDA7 123 aa5.87□□□□□ -1.47
LIMA1-201ENST00000341247 LIMD2Q9BT23 127 aa5.87□□□□□ -1.47
LIMA1-201ENST00000341247 PRR15LQ9BU68 103 aa5.87□□□□□ -1.47
LIMA1-201ENST00000341247 PRO0628Q9UI54 55 aa5.87□□□□□ -1.47
LIMA1-201ENST00000341247 HRES1P13985 223 aa5.86□□□□□ -1.47
LIMA1-201ENST00000341247 KRTAP13-3Q3SY46 172 aa5.86□□□□□ -1.47
LIMA1-201ENST00000341247 IGKV2D-30A0A075B6S6 120 aa5.85□□□□□ -1.47
LIMA1-201ENST00000341247 IGKV2-30P06310 120 aa5.85□□□□□ -1.47
LIMA1-201ENST00000341247 LINC00304Q8N9R0 145 aa5.83□□□□□ -1.48
LIMA1-201ENST00000341247 A8MU10 97 aa5.83□□□□□ -1.48
LIMA1-201ENST00000341247 EPPK1P58107 5090 aaKnown RBP5.83□□□□□ -1.48
LIMA1-201ENST00000341247 MYCBP2O75592 4640 aa5.83□□□□□ -1.48
LIMA1-201ENST00000341247 FAM229AH3BQW9 127 aa5.83□□□□□ -1.48
LIMA1-201ENST00000341247 CHKB-CPT1BH3BT56 60 aa5.83□□□□□ -1.48
LIMA1-201ENST00000341247 TNXBP22105 4242 aa5.82□□□□□ -1.48
LIMA1-201ENST00000341247 A0A1B0GVY2 172 aa5.82□□□□□ -1.48
LIMA1-201ENST00000341247 KRTAP16-1A8MUX0 517 aa5.82□□□□□ -1.48
LIMA1-201ENST00000341247 Q5VV11 94 aa5.82□□□□□ -1.48
LIMA1-201ENST00000341247 SPINK1P00995 79 aa5.82□□□□□ -1.48
LIMA1-201ENST00000341247 V9GYY9 64 aa5.81□□□□□ -1.48
LIMA1-201ENST00000341247 KIAA1109Q2LD37 5005 aa5.8□□□□□ -1.48
LIMA1-201ENST00000341247 C9orf92A6NGG3 77 aa5.8□□□□□ -1.48
LIMA1-201ENST00000341247 KRTAP10-4P60372 401 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-201ENST00000341247 KRTAP17-1Q9BYP8 105 aa5.78□□□□□ -1.48
LIMA1-201ENST00000341247 RYR1P21817 5038 aa5.77□□□□□ -1.49
LIMA1-201ENST00000341247 A6NED7 52 aa5.75□□□□□ -1.49
LIMA1-201ENST00000341247 ACYP2P14621 99 aa5.75□□□□□ -1.49
LIMA1-201ENST00000341247 FAT3Q8TDW7 4589 aa5.73□□□□□ -1.49
LIMA1-201ENST00000341247 FLG2Q5D862 2391 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-201ENST00000341247 DMAC1Q96GE9 116 aa5.71□□□□□ -1.49
LIMA1-201ENST00000341247 Q8N1X5 172 aa5.71□□□□□ -1.5
LIMA1-201ENST00000341247 SPTSSBQ8NFR3 76 aa5.71□□□□□ -1.5
LIMA1-201ENST00000341247 C7orf65Q6ZTY9 151 aa5.71□□□□□ -1.5
LIMA1-201ENST00000341247 LINC01558Q9Y6Z2 57 aa5.71□□□□□ -1.5
LIMA1-201ENST00000341247 DMBT1Q9UGM3 2413 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-201ENST00000341247 Q75L30 129 aa5.69□□□□□ -1.5
LIMA1-201ENST00000341247 SPINK7P58062 85 aa5.68□□□□□ -1.5
LIMA1-201ENST00000341247 LCA10Q71F78 164 aa5.68□□□□□ -1.5
LIMA1-201ENST00000341247 LPAP08519 4548 aa5.67□□□□□ -1.5
LIMA1-201ENST00000341247 ABCA13Q86UQ4 5058 aa5.66□□□□□ -1.5
LIMA1-201ENST00000341247 RPS29P62273 56 aaKnown RBP5.64□□□□□ -1.51
LIMA1-201ENST00000341247 PMAIP1Q13794 54 aa5.63□□□□□ -1.51
LIMA1-201ENST00000341247 A0A1B0GU69 56 aa5.61□□□□□ -1.51
LIMA1-201ENST00000341247 Q5VSD8 79 aa5.61□□□□□ -1.51
LIMA1-201ENST00000341247 CDC42SE1Q9NRR8 79 aa5.58□□□□□ -1.52
LIMA1-201ENST00000341247 A8MUU9 505 aa5.57□□□□□ -1.52
LIMA1-201ENST00000341247 C20orf166-AS1Q96NR2 134 aa5.57□□□□□ -1.52
LIMA1-201ENST00000341247 LRP2P98164 4655 aa5.53□□□□□ -1.52
LIMA1-201ENST00000341247 ATP11AUNQ6ZP68 121 aa5.53□□□□□ -1.52
LIMA1-201ENST00000341247 KRTAP3-1Q9BYR8 98 aa5.51□□□□□ -1.53
LIMA1-201ENST00000341247 KRTAP10-8P60410 259 aa5.49□□□□□ -1.53
LIMA1-201ENST00000341247 A6NN06 94 aa5.45□□□□□ -1.54
LIMA1-201ENST00000341247 MIR22HGQ0VDD5 57 aa5.45□□□□□ -1.54
LIMA1-201ENST00000341247 UQCR11O14957 56 aa5.45□□□□□ -1.54
LIMA1-201ENST00000341247 SEC61GP60059 68 aa5.45□□□□□ -1.54
LIMA1-201ENST00000341247 KRTAP4-5Q9BYR2 181 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms