RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KRTAP11-1Q8IUC1 163 aa6.01□□□□□ -1.45
CHD3-201ENST00000330494 RELNP78509 3460 aa6□□□□□ -1.45
CHD3-201ENST00000330494 NSD1Q96L73 2696 aaPredicted RBP5.99□□□□□ -1.45
CHD3-201ENST00000330494 HIVEP1P15822 2718 aa5.98□□□□□ -1.45
CHD3-201ENST00000330494 KRTAP4-16G5E9R7 235 aaPredicted RBP5.97□□□□□ -1.45
CHD3-201ENST00000330494 Q6ZR54 194 aa5.97□□□□□ -1.45
CHD3-201ENST00000330494 KMT2BQ9UMN6 2715 aaPredicted RBP5.96□□□□□ -1.46
CHD3-201ENST00000330494 CELSR2Q9HCU4 2923 aa5.95□□□□□ -1.46
CHD3-201ENST00000330494 NOTCH2NLQ7Z3S9 236 aa5.95□□□□□ -1.46
CHD3-201ENST00000330494 STAB2Q8WWQ8 2551 aa5.94□□□□□ -1.46
CHD3-201ENST00000330494 SEC61BP60468 96 aaKnown RBP5.94□□□□□ -1.46
CHD3-201ENST00000330494 R4GN34 69 aa5.94□□□□□ -1.46
CHD3-201ENST00000330494 A6NN06 94 aa5.94□□□□□ -1.46
CHD3-201ENST00000330494 RPL37P61927 97 aaKnown RBP5.93□□□□□ -1.46
CHD3-201ENST00000330494 PLAC4Q8WY50 150 aa5.93□□□□□ -1.46
CHD3-201ENST00000330494 CSMD1Q96PZ7 3565 aa5.93□□□□□ -1.46
CHD3-201ENST00000330494 ASB16-AS1Q495Z4 193 aa5.92□□□□□ -1.46
CHD3-201ENST00000330494 H1FX-AS1Q4G0G2 97 aa5.91□□□□□ -1.46
CHD3-201ENST00000330494 SPATA8Q6RVD6 105 aa5.91□□□□□ -1.46
CHD3-201ENST00000330494 ADM2Q7Z4H4 148 aa5.91□□□□□ -1.46
CHD3-201ENST00000330494 DMBT1Q9UGM3 2413 aaPredicted RBP5.89□□□□□ -1.47
CHD3-201ENST00000330494 KRTAP7-1Q8IUC3 87 aa5.89□□□□□ -1.47
CHD3-201ENST00000330494 Q6ZRN7 208 aaPredicted RBP5.88□□□□□ -1.47
CHD3-201ENST00000330494 KRTAP25-1Q3LHN0 102 aa5.87□□□□□ -1.47
CHD3-201ENST00000330494 NBPF19A0A087WUL8 3843 aa5.87□□□□□ -1.47
CHD3-201ENST00000330494 NDUFAF8A1L188 74 aa5.87□□□□□ -1.47
CHD3-201ENST00000330494 ZANQ9Y493 2812 aa5.86□□□□□ -1.47
CHD3-201ENST00000330494 M0QZ58 72 aa5.86□□□□□ -1.47
CHD3-201ENST00000330494 A8MU10 97 aa5.86□□□□□ -1.47
CHD3-201ENST00000330494 HRNRQ86YZ3 2850 aaPredicted RBP5.86□□□□□ -1.47
CHD3-201ENST00000330494 DCHS2Q6V1P9 2916 aa5.84□□□□□ -1.47
CHD3-201ENST00000330494 FBN2P35556 2912 aa5.84□□□□□ -1.47
CHD3-201ENST00000330494 KRTAP29-1A8MX34 341 aaPredicted RBP5.82□□□□□ -1.48
CHD3-201ENST00000330494 KRTAP13-2Q52LG2 175 aa5.79□□□□□ -1.48
CHD3-201ENST00000330494 SPENQ96T58 3664 aaKnown RBP5.79□□□□□ -1.48
CHD3-201ENST00000330494 SMG1Q96Q15 3661 aaKnown RBP5.77□□□□□ -1.49
CHD3-201ENST00000330494 MUC3AQ02505 3323 aa5.77□□□□□ -1.49
CHD3-201ENST00000330494 CELSR1Q9NYQ6 3014 aa5.75□□□□□ -1.49
CHD3-201ENST00000330494 SVEP1Q4LDE5 3571 aa5.72□□□□□ -1.49
CHD3-201ENST00000330494 KRTAP13-1Q8IUC0 172 aa5.7□□□□□ -1.5
CHD3-201ENST00000330494 TENM4Q6N022 2769 aa5.7□□□□□ -1.5
CHD3-201ENST00000330494 NF1P21359 2839 aa5.7□□□□□ -1.5
CHD3-201ENST00000330494 C20orf166-AS1Q96NR2 134 aa5.69□□□□□ -1.5
CHD3-201ENST00000330494 NIPBLQ6KC79 2804 aaeCLIP5.68□□□□□ -1.51e-6■■■□□ 16.9
CHD3-201ENST00000330494 ZFHX3Q15911 3703 aa5.66□□□□□ -1.5
CHD3-201ENST00000330494 A8MUU9 505 aa5.65□□□□□ -1.5
CHD3-201ENST00000330494 RPS29P62273 56 aaKnown RBP5.62□□□□□ -1.51
CHD3-201ENST00000330494 CUBNO60494 3623 aa5.62□□□□□ -1.51
CHD3-201ENST00000330494 TENM1Q9UKZ4 2725 aa5.57□□□□□ -1.52
CHD3-201ENST00000330494 A0A1B0GVY2 172 aa5.55□□□□□ -1.52
CHD3-201ENST00000330494 C10orf95Q9H7T3 257 aa5.55□□□□□ -1.52
CHD3-201ENST00000330494 KRTAP21-3Q3LHN1 58 aa5.55□□□□□ -1.52
CHD3-201ENST00000330494 MXRA5Q9NR99 2828 aa5.53□□□□□ -1.52
CHD3-201ENST00000330494 CSMD2Q7Z408 3487 aa5.53□□□□□ -1.52
CHD3-201ENST00000330494 KRTAP1-4P0C5Y4 121 aa5.49□□□□□ -1.53
CHD3-201ENST00000330494 TENM2Q9NT68 2774 aa5.49□□□□□ -1.53
CHD3-201ENST00000330494 PKD1L1Q8TDX9 2849 aa5.46□□□□□ -1.54
CHD3-201ENST00000330494 VPS13CQ709C8 3753 aa5.45□□□□□ -1.54
CHD3-201ENST00000330494 BSNQ9UPA5 3926 aa5.45□□□□□ -1.54
CHD3-201ENST00000330494 XP32Q5T750 250 aa5.45□□□□□ -1.54
CHD3-201ENST00000330494 VWFP04275 2813 aa5.41□□□□□ -1.54
CHD3-201ENST00000330494 TENM3Q9P273 2699 aa5.37□□□□□ -1.55
CHD3-201ENST00000330494 KRTAP10-8P60410 259 aa5.37□□□□□ -1.55
CHD3-201ENST00000330494 PDZD2O15018 2839 aa5.36□□□□□ -1.55
CHD3-201ENST00000330494 TNP1P09430 55 aa5.35□□□□□ -1.55
CHD3-201ENST00000330494 H0YAA0 97 aa5.34□□□□□ -1.55
CHD3-201ENST00000330494 P0C880 135 aa5.32□□□□□ -1.56
CHD3-201ENST00000330494 FBN1P35555 2871 aaKnown RBP5.31□□□□□ -1.56
CHD3-201ENST00000330494 TGP01266 2768 aa5.31□□□□□ -1.56
CHD3-201ENST00000330494 TRRAPQ9Y4A5 3859 aa5.3□□□□□ -1.56
CHD3-201ENST00000330494 ANK3Q12955 4377 aaKnown RBP5.29□□□□□ -1.56
CHD3-201ENST00000330494 KRTAP10-10P60014 251 aa5.27□□□□□ -1.57
CHD3-201ENST00000330494 TPRXLQ17RH7 258 aa5.27□□□□□ -1.57
CHD3-201ENST00000330494 KRTAP13-3Q3SY46 172 aa5.25□□□□□ -1.57
CHD3-201ENST00000330494 PP632Q6XCG6 107 aa5.24□□□□□ -1.57
CHD3-201ENST00000330494 OTOGQ6ZRI0 2925 aa5.21□□□□□ -1.58
CHD3-201ENST00000330494 AKAP9Q99996 3911 aa5.07□□□□□ -1.6
CHD3-201ENST00000330494 FBN3Q75N90 2809 aa5.07□□□□□ -1.6
CHD3-201ENST00000330494 CSMD3Q7Z407 3707 aa5.07□□□□□ -1.6
CHD3-201ENST00000330494 PRO2289Q9P1D8 64 aa5.06□□□□□ -1.6
CHD3-201ENST00000330494 ZNF469Q96JG9 3925 aaPredicted RBP5.06□□□□□ -1.6
CHD3-201ENST00000330494 COL7A1Q02388 2944 aa5.02□□□□□ -1.61
CHD3-201ENST00000330494 KRTAP12-2P59991 146 aa5.01□□□□□ -1.61
CHD3-201ENST00000330494 MEGF8Q7Z7M0 2845 aa5.01□□□□□ -1.61
CHD3-201ENST00000330494 SRRM2Q9UQ35 2752 aaKnown RBP5.01□□□□□ -1.61
CHD3-201ENST00000330494 HUWE1Q7Z6Z7 4374 aaKnown RBP5.01□□□□□ -1.61
CHD3-201ENST00000330494 KRTAP3-1Q9BYR8 98 aa4.92□□□□□ -1.62
CHD3-201ENST00000330494 KRTAP12-1P59990 96 aa4.87□□□□□ -1.63
CHD3-201ENST00000330494 KRTAP4-5Q9BYR2 181 aa4.82□□□□□ -1.64
CHD3-201ENST00000330494 KRTAP13-4Q3LI77 160 aa4.81□□□□□ -1.64
CHD3-201ENST00000330494 CRCT1Q9UGL9 99 aa4.77□□□□□ -1.65
CHD3-201ENST00000330494 MT1HL1P0DM35 61 aa4.77□□□□□ -1.65
CHD3-201ENST00000330494 KRTAP15-1Q3LI76 137 aa4.75□□□□□ -1.65
CHD3-201ENST00000330494 KRTAP10-6P60371 365 aaPredicted RBP4.72□□□□□ -1.65
CHD3-201ENST00000330494 ALMS1Q8TCU4 4167 aa4.69□□□□□ -1.66
CHD3-201ENST00000330494 DNAH9Q9NYC9 4486 aa4.68□□□□□ -1.66
CHD3-201ENST00000330494 INE1O15225 51 aa4.66□□□□□ -1.66
CHD3-201ENST00000330494 KRTAP10-4P60372 401 aaPredicted RBP4.63□□□□□ -1.67
CHD3-201ENST00000330494 KRTAP3-3Q9BYR6 98 aa4.61□□□□□ -1.67
CHD3-201ENST00000330494 FRAS1Q86XX4 4008 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms