RNA–Protein interactions for RNA: ENST00000330045.11

BRCC3-201, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

TSL 1 (best) BASIC

Gene BRCC3, Length 2,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-201ENST00000330045 CDK2AP2O75956 126 aa9.17□□□□□ -0.94
BRCC3-201ENST00000330045 FAT2Q9NYQ8 4349 aa9.17□□□□□ -0.94
BRCC3-201ENST00000330045 SACSQ9NZJ4 4579 aa9.16□□□□□ -0.94
BRCC3-201ENST00000330045 A8MUN3 132 aa9.16□□□□□ -0.94
BRCC3-201ENST00000330045 NDUFS5O43920 106 aa9.15□□□□□ -0.94
BRCC3-201ENST00000330045 PCOTHQ58A44 107 aa9.15□□□□□ -0.94
BRCC3-201ENST00000330045 Q8N9P0 234 aaPredicted RBP9.14□□□□□ -0.95
BRCC3-201ENST00000330045 MRPL34Q9BQ48 92 aaKnown RBP9.13□□□□□ -0.95
BRCC3-201ENST00000330045 COA5Q86WW8 74 aa9.12□□□□□ -0.95
BRCC3-201ENST00000330045 CD164Q04900 197 aa9.12□□□□□ -0.95
BRCC3-201ENST00000330045 C1orf134Q5TEV5 83 aa9.12□□□□□ -0.95
BRCC3-201ENST00000330045 LIMD2Q9BT23 127 aa9.11□□□□□ -0.95
BRCC3-201ENST00000330045 C1orf195Q5TG92 126 aa9.11□□□□□ -0.95
BRCC3-201ENST00000330045 PKD1P98161 4303 aa9.1□□□□□ -0.95
BRCC3-201ENST00000330045 A0A087X002 238 aa9.1□□□□□ -0.95
BRCC3-201ENST00000330045 Q5VV11 94 aa9.1□□□□□ -0.95
BRCC3-201ENST00000330045 NOTCH2NLQ7Z3S9 236 aa9.1□□□□□ -0.95
BRCC3-201ENST00000330045 IGLV7-43P04211 117 aa9.07□□□□□ -0.96
BRCC3-201ENST00000330045 SPINK6Q6UWN8 80 aa9.06□□□□□ -0.96
BRCC3-201ENST00000330045 PRR15LQ9BU68 103 aa9.05□□□□□ -0.96
BRCC3-201ENST00000330045 KRTAP10-2P60368 255 aa9.04□□□□□ -0.96
BRCC3-201ENST00000330045 CIRBP-AS1Q8TBR5 109 aa9.04□□□□□ -0.96
BRCC3-201ENST00000330045 CHKB-CPT1BH3BT56 60 aa9.03□□□□□ -0.96
BRCC3-201ENST00000330045 PKHD1P08F94 4074 aa9.01□□□□□ -0.97
BRCC3-201ENST00000330045 KMT2CQ8NEZ4 4911 aaKnown RBP9□□□□□ -0.97
BRCC3-201ENST00000330045 LRP1BQ9NZR2 4599 aa8.99□□□□□ -0.97
BRCC3-201ENST00000330045 LOC101927531A0A1B0GV80 90 aa8.98□□□□□ -0.97
BRCC3-201ENST00000330045 SSBP3-AS1Q7Z2R9 100 aa8.98□□□□□ -0.97
BRCC3-201ENST00000330045 A8MU10 97 aa8.97□□□□□ -0.97
BRCC3-201ENST00000330045 Q5W150 140 aa8.97□□□□□ -0.97
BRCC3-201ENST00000330045 HRES1P13985 223 aa8.97□□□□□ -0.97
BRCC3-201ENST00000330045 Q75L30 129 aa8.97□□□□□ -0.97
BRCC3-201ENST00000330045 KRTAP13-3Q3SY46 172 aa8.95□□□□□ -0.98
BRCC3-201ENST00000330045 SPAG11AQ6PDA7 123 aa8.95□□□□□ -0.98
BRCC3-201ENST00000330045 C8orf87E5RJ46 101 aa8.93□□□□□ -0.98
BRCC3-201ENST00000330045 LINC01558Q9Y6Z2 57 aa8.93□□□□□ -0.98
BRCC3-201ENST00000330045 RYR2Q92736 4967 aa8.92□□□□□ -0.98
BRCC3-201ENST00000330045 A6NED7 52 aa8.91□□□□□ -0.98
BRCC3-201ENST00000330045 KRTAP10-1P60331 282 aa8.9□□□□□ -0.99
BRCC3-201ENST00000330045 PMAIP1Q13794 54 aa8.89□□□□□ -0.99
BRCC3-201ENST00000330045 LINC00313P59037 77 aa8.88□□□□□ -0.99
BRCC3-201ENST00000330045 LCA10Q71F78 164 aa8.88□□□□□ -0.99
BRCC3-201ENST00000330045 DYNC1H1Q14204 4646 aaKnown RBP8.86□□□□□ -0.99
BRCC3-201ENST00000330045 KRTAP13-2Q52LG2 175 aa8.85□□□□□ -0.99
BRCC3-201ENST00000330045 VPS13BQ7Z7G8 4022 aa8.84□□□□□ -0.99
BRCC3-201ENST00000330045 ACYP2P14621 99 aa8.83□□□□□ -1
BRCC3-201ENST00000330045 FAM229AH3BQW9 127 aa8.82□□□□□ -1
BRCC3-201ENST00000330045 PRR26Q8N8Z3 221 aa8.82□□□□□ -1
BRCC3-201ENST00000330045 SPTSSBQ8NFR3 76 aa8.82□□□□□ -1
BRCC3-201ENST00000330045 ATP11AUNQ6ZP68 121 aa8.81□□□□□ -1
BRCC3-201ENST00000330045 Q6ZSA8 131 aa8.81□□□□□ -1
BRCC3-201ENST00000330045 CDC42SE1Q9NRR8 79 aa8.81□□□□□ -1
BRCC3-201ENST00000330045 RETNLBQ9BQ08 111 aa8.79□□□□□ -1
BRCC3-201ENST00000330045 RYR3Q15413 4870 aa8.78□□□□□ -1
BRCC3-201ENST00000330045 DMAC1Q96GE9 116 aa8.77□□□□□ -1.01
BRCC3-201ENST00000330045 SPINK7P58062 85 aa8.76□□□□□ -1.01
BRCC3-201ENST00000330045 IGKV2-30P06310 120 aa8.76□□□□□ -1.01
BRCC3-201ENST00000330045 FAT1Q14517 4588 aa8.75□□□□□ -1.01
BRCC3-201ENST00000330045 KRTAP16-1A8MUX0 517 aa8.75□□□□□ -1.01
BRCC3-201ENST00000330045 KRTAP1-4P0C5Y4 121 aa8.74□□□□□ -1.01
BRCC3-201ENST00000330045 APOBP04114 4563 aaKnown RBP8.74□□□□□ -1.01
BRCC3-201ENST00000330045 A6NN06 94 aa8.68□□□□□ -1.02
BRCC3-201ENST00000330045 C4orf48Q5BLP8 95 aa8.68□□□□□ -1.02
BRCC3-201ENST00000330045 PLA2G1BP04054 148 aaKnown RBP8.67□□□□□ -1.02
BRCC3-201ENST00000330045 SEC61GP60059 68 aa8.67□□□□□ -1.02
BRCC3-201ENST00000330045 KTN1-AS1Q86SY8 53 aa8.67□□□□□ -1.02
BRCC3-201ENST00000330045 A0A1B0GVY2 172 aa8.66□□□□□ -1.02
BRCC3-201ENST00000330045 TYMSOSQ8TAI1 123 aa8.65□□□□□ -1.02
BRCC3-201ENST00000330045 IGKV2D-30A0A075B6S6 120 aa8.64□□□□□ -1.03
BRCC3-201ENST00000330045 SMR3BP02814 79 aaPredicted RBP8.63□□□□□ -1.03
BRCC3-201ENST00000330045 SPINK1P00995 79 aa8.62□□□□□ -1.03
BRCC3-201ENST00000330045 A0A1B0GU69 56 aa8.61□□□□□ -1.03
BRCC3-201ENST00000330045 C7orf65Q6ZTY9 151 aa8.57□□□□□ -1.04
BRCC3-201ENST00000330045 LINC00304Q8N9R0 145 aa8.52□□□□□ -1.05
BRCC3-201ENST00000330045 HSPG2P98160 4391 aa8.5□□□□□ -1.05
BRCC3-201ENST00000330045 RPS29P62273 56 aaKnown RBP8.49□□□□□ -1.05
BRCC3-201ENST00000330045 SPATA8Q6RVD6 105 aa8.48□□□□□ -1.05
BRCC3-201ENST00000330045 EPPK1P58107 5090 aaKnown RBP8.47□□□□□ -1.05
BRCC3-201ENST00000330045 UQCR11O14957 56 aa8.46□□□□□ -1.06
BRCC3-201ENST00000330045 RBM12B-AS1Q9P1G2 102 aa8.46□□□□□ -1.06
BRCC3-201ENST00000330045 KRTAP10-4P60372 401 aaPredicted RBP8.45□□□□□ -1.06
BRCC3-201ENST00000330045 MIR22HGQ0VDD5 57 aa8.44□□□□□ -1.06
BRCC3-201ENST00000330045 Q8N1X5 172 aa8.43□□□□□ -1.06
BRCC3-201ENST00000330045 KIAA1109Q2LD37 5005 aa8.43□□□□□ -1.06
BRCC3-201ENST00000330045 PKHD1L1Q86WI1 4243 aa8.42□□□□□ -1.06
BRCC3-201ENST00000330045 RYR1P21817 5038 aa8.41□□□□□ -1.06
BRCC3-201ENST00000330045 LRP1Q07954 4544 aaKnown RBP8.41□□□□□ -1.06
BRCC3-201ENST00000330045 KRTAP17-1Q9BYP8 105 aa8.38□□□□□ -1.07
BRCC3-201ENST00000330045 C9orf92A6NGG3 77 aa8.37□□□□□ -1.07
BRCC3-201ENST00000330045 A8MUU9 505 aa8.35□□□□□ -1.07
BRCC3-201ENST00000330045 C20orf166-AS1Q96NR2 134 aa8.35□□□□□ -1.07
BRCC3-201ENST00000330045 MYCBP2O75592 4640 aa8.28□□□□□ -1.08
BRCC3-201ENST00000330045 PRAC1Q96KF2 57 aa8.27□□□□□ -1.09
BRCC3-201ENST00000330045 TNXBP22105 4242 aa8.27□□□□□ -1.09
BRCC3-201ENST00000330045 ADM2Q7Z4H4 148 aa8.26□□□□□ -1.09
BRCC3-201ENST00000330045 FLG2Q5D862 2391 aaPredicted RBP8.25□□□□□ -1.09
BRCC3-201ENST00000330045 Q5VSD8 79 aa8.24□□□□□ -1.09
BRCC3-201ENST00000330045 KRTAP3-1Q9BYR8 98 aa8.24□□□□□ -1.09
BRCC3-201ENST00000330045 FAT3Q8TDW7 4589 aa8.23□□□□□ -1.09
BRCC3-201ENST00000330045 H0YAA0 97 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms