RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NOTCH2NLQ7Z3S9 236 aa8.17□□□□□ -1.1
COL7A1-201ENST00000328333 TNP1P09430 55 aa8.17□□□□□ -1.1
COL7A1-201ENST00000328333 FREM2Q5SZK8 3169 aa8.16□□□□□ -1.1
COL7A1-201ENST00000328333 RANBP2P49792 3224 aaKnown RBP8.15□□□□□ -1.1
COL7A1-201ENST00000328333 TENM4Q6N022 2769 aa8.13□□□□□ -1.11
COL7A1-201ENST00000328333 FBN2P35556 2912 aa8.12□□□□□ -1.11
COL7A1-201ENST00000328333 LAMA1P25391 3075 aa8.09□□□□□ -1.11
COL7A1-201ENST00000328333 XIRP2A4UGR9 3374 aa8.08□□□□□ -1.12
COL7A1-201ENST00000328333 VWFP04275 2813 aa8.07□□□□□ -1.12
COL7A1-201ENST00000328333 A8MU10 97 aa8.07□□□□□ -1.12
COL7A1-201ENST00000328333 KRTAP10-1P60331 282 aa8.05□□□□□ -1.12
COL7A1-201ENST00000328333 C10orf95Q9H7T3 257 aa8.04□□□□□ -1.12
COL7A1-201ENST00000328333 MXRA5Q9NR99 2828 aa8.02□□□□□ -1.12
COL7A1-201ENST00000328333 PKD1L1Q8TDX9 2849 aa7.98□□□□□ -1.13
COL7A1-201ENST00000328333 HRNRQ86YZ3 2850 aaPredicted RBP7.98□□□□□ -1.13
COL7A1-201ENST00000328333 BOD1L1Q8NFC6 3051 aa7.98□□□□□ -1.13
COL7A1-201ENST00000328333 HTTP42858 3142 aa7.98□□□□□ -1.13
COL7A1-201ENST00000328333 Q6ZRN7 208 aaPredicted RBP7.98□□□□□ -1.13
COL7A1-201ENST00000328333 KRTAP10-2P60368 255 aa7.97□□□□□ -1.13
COL7A1-201ENST00000328333 KRTAP13-1Q8IUC0 172 aa7.97□□□□□ -1.13
COL7A1-201ENST00000328333 USP34Q70CQ2 3546 aa7.93□□□□□ -1.14
COL7A1-201ENST00000328333 DMXL1Q9Y485 3027 aa7.93□□□□□ -1.14
COL7A1-201ENST00000328333 MKI67P46013 3256 aaKnown RBP7.92□□□□□ -1.14
COL7A1-201ENST00000328333 ATMQ13315 3056 aa7.91□□□□□ -1.14
COL7A1-201ENST00000328333 ADGRG4Q8IZF6 3080 aa7.9□□□□□ -1.14
COL7A1-201ENST00000328333 P0C880 135 aa7.9□□□□□ -1.15
COL7A1-201ENST00000328333 CELSR1Q9NYQ6 3014 aa7.89□□□□□ -1.15
COL7A1-201ENST00000328333 UNC80Q8N2C7 3258 aa7.86□□□□□ -1.15
COL7A1-201ENST00000328333 REV3LO60673 3130 aa7.85□□□□□ -1.15
COL7A1-201ENST00000328333 LAMA3Q16787 3333 aa7.82□□□□□ -1.16
COL7A1-201ENST00000328333 COL6A3P12111 3177 aa7.82□□□□□ -1.16
COL7A1-201ENST00000328333 KRTAP13-2Q52LG2 175 aa7.8□□□□□ -1.16
COL7A1-201ENST00000328333 H0YAA0 97 aa7.79□□□□□ -1.16
COL7A1-201ENST00000328333 CELSR3Q9NYQ7 3312 aa7.77□□□□□ -1.17
COL7A1-201ENST00000328333 COL7A1Q02388 2944 aa7.76□□□□□ -1.17
COL7A1-201ENST00000328333 TENM2Q9NT68 2774 aa7.76□□□□□ -1.17
COL7A1-201ENST00000328333 KRTAP7-1Q8IUC3 87 aa7.72□□□□□ -1.17
COL7A1-201ENST00000328333 BRCA2P51587 3418 aa7.66□□□□□ -1.18
COL7A1-201ENST00000328333 PRO2289Q9P1D8 64 aa7.65□□□□□ -1.18
COL7A1-201ENST00000328333 DNAH14Q0VDD8 3507 aa7.6□□□□□ -1.19
COL7A1-201ENST00000328333 CFAP47Q6ZTR5 3102 aa7.53□□□□□ -1.2
COL7A1-201ENST00000328333 KRTAP10-8P60410 259 aa7.52□□□□□ -1.21
COL7A1-201ENST00000328333 VCANP13611 3396 aa7.51□□□□□ -1.21
COL7A1-201ENST00000328333 TPRXLQ17RH7 258 aa7.5□□□□□ -1.21
COL7A1-201ENST00000328333 MEGF8Q7Z7M0 2845 aa7.5□□□□□ -1.21
COL7A1-201ENST00000328333 XP32Q5T750 250 aa7.49□□□□□ -1.21
COL7A1-201ENST00000328333 CDH23Q9H251 3354 aa7.41□□□□□ -1.22
COL7A1-201ENST00000328333 FBN1P35555 2871 aaKnown RBP7.41□□□□□ -1.22
COL7A1-201ENST00000328333 KRTAP1-4P0C5Y4 121 aa7.37□□□□□ -1.23
COL7A1-201ENST00000328333 SPEGQ15772 3267 aa7.34□□□□□ -1.23
COL7A1-201ENST00000328333 MYO15AQ9UKN7 3530 aa7.33□□□□□ -1.24
COL7A1-201ENST00000328333 FBN3Q75N90 2809 aa7.32□□□□□ -1.24
COL7A1-201ENST00000328333 KRTAP13-4Q3LI77 160 aa7.32□□□□□ -1.24
COL7A1-201ENST00000328333 SPTBN5Q9NRC6 3674 aaKnown RBP7.31□□□□□ -1.24
COL7A1-201ENST00000328333 ZFHX3Q15911 3703 aa7.3□□□□□ -1.24
COL7A1-201ENST00000328333 KRTAP13-3Q3SY46 172 aa7.27□□□□□ -1.25
COL7A1-201ENST00000328333 INE1O15225 51 aa7.26□□□□□ -1.25
COL7A1-201ENST00000328333 EYSQ5T1H1 3165 aa7.25□□□□□ -1.25
COL7A1-201ENST00000328333 KRTAP21-3Q3LHN1 58 aa7.25□□□□□ -1.25
COL7A1-201ENST00000328333 KRTAP12-2P59991 146 aa7.15□□□□□ -1.26
COL7A1-201ENST00000328333 KRTAP10-10P60014 251 aa7.15□□□□□ -1.26
COL7A1-201ENST00000328333 OTOGQ6ZRI0 2925 aa7.12□□□□□ -1.27
COL7A1-201ENST00000328333 A0A1B0GVY2 172 aa7.09□□□□□ -1.28
COL7A1-201ENST00000328333 NBPF19A0A087WUL8 3843 aa7.06□□□□□ -1.28
COL7A1-201ENST00000328333 KRTAP12-1P59990 96 aa7.06□□□□□ -1.28
COL7A1-201ENST00000328333 WDFY3Q8IZQ1 3526 aa7.05□□□□□ -1.28
COL7A1-201ENST00000328333 SZT2Q5T011 3432 aa7.05□□□□□ -1.28
COL7A1-201ENST00000328333 ZFHX4Q86UP3 3567 aa7.02□□□□□ -1.29
COL7A1-201ENST00000328333 SPENQ96T58 3664 aaKnown RBP7.01□□□□□ -1.29
COL7A1-201ENST00000328333 LOC400499M0QZD8 3231 aa6.97□□□□□ -1.29
COL7A1-201ENST00000328333 SMG1Q96Q15 3661 aaKnown RBP6.92□□□□□ -1.3
COL7A1-201ENST00000328333 DMDP11532 3685 aa6.89□□□□□ -1.31
COL7A1-201ENST00000328333 KRTAP15-1Q3LI76 137 aa6.87□□□□□ -1.31
COL7A1-201ENST00000328333 RELNP78509 3460 aa6.86□□□□□ -1.31
COL7A1-201ENST00000328333 LAMA5O15230 3695 aa6.84□□□□□ -1.31
COL7A1-201ENST00000328333 ASPMQ8IZT6 3477 aa6.83□□□□□ -1.32
COL7A1-201ENST00000328333 KRTAP23-1A1A580 65 aa6.77□□□□□ -1.33
COL7A1-201ENST00000328333 DCHS1Q96JQ0 3298 aa6.75□□□□□ -1.33
COL7A1-201ENST00000328333 TRRAPQ9Y4A5 3859 aa6.74□□□□□ -1.33
COL7A1-201ENST00000328333 KRTAP10-6P60371 365 aaPredicted RBP6.7□□□□□ -1.34
COL7A1-201ENST00000328333 VPS13CQ709C8 3753 aa6.69□□□□□ -1.34
COL7A1-201ENST00000328333 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
COL7A1-201ENST00000328333 KRTAP3-1Q9BYR8 98 aa6.65□□□□□ -1.34
COL7A1-201ENST00000328333 CSMD1Q96PZ7 3565 aa6.6□□□□□ -1.35
COL7A1-201ENST00000328333 KRTAP10-12P60413 245 aa6.53□□□□□ -1.36
COL7A1-201ENST00000328333 MUC3AQ02505 3323 aa6.37□□□□□ -1.39
COL7A1-201ENST00000328333 KRTAP3-2Q9BYR7 98 aa6.36□□□□□ -1.39
COL7A1-201ENST00000328333 KRTAP12-3P60328 96 aa6.35□□□□□ -1.39
COL7A1-201ENST00000328333 CUBNO60494 3623 aa6.34□□□□□ -1.4
COL7A1-201ENST00000328333 SVEP1Q4LDE5 3571 aa6.32□□□□□ -1.4
COL7A1-201ENST00000328333 BSNQ9UPA5 3926 aa6.32□□□□□ -1.4
COL7A1-201ENST00000328333 ALMS1Q8TCU4 4167 aa6.29□□□□□ -1.4
COL7A1-201ENST00000328333 KRTAP3-3Q9BYR6 98 aa6.29□□□□□ -1.4
COL7A1-201ENST00000328333 CSMD3Q7Z407 3707 aa6.28□□□□□ -1.4
COL7A1-201ENST00000328333 LYSTQ99698 3801 aa6.13□□□□□ -1.43
COL7A1-201ENST00000328333 CRCT1Q9UGL9 99 aa6.13□□□□□ -1.43
COL7A1-201ENST00000328333 CSMD2Q7Z408 3487 aa6.04□□□□□ -1.44
COL7A1-201ENST00000328333 LCE3AQ5TA76 89 aa6.02□□□□□ -1.45
COL7A1-201ENST00000328333 DNAH3Q8TD57 4116 aa6□□□□□ -1.45
COL7A1-201ENST00000328333 KRTAP19-4Q3LI73 84 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms