RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 MRPL34Q9BQ48 92 aaKnown RBP11.83□□□□□ -0.52
SOX2-201ENST00000325404 IGHV6-1A0A0B4J1U7 121 aa11.83□□□□□ -0.52
SOX2-201ENST00000325404 A8MUN3 132 aa11.79□□□□□ -0.52
SOX2-201ENST00000325404 COA5Q86WW8 74 aa11.79□□□□□ -0.52
SOX2-201ENST00000325404 CD164Q04900 197 aa11.78□□□□□ -0.52
SOX2-201ENST00000325404 Q5VV11 94 aa11.77□□□□□ -0.53
SOX2-201ENST00000325404 IGLV7-43P04211 117 aa11.75□□□□□ -0.53
SOX2-201ENST00000325404 ANAPC11Q9NYG5 84 aa11.75□□□□□ -0.53
SOX2-201ENST00000325404 NDUFS5O43920 106 aa11.75□□□□□ -0.53
SOX2-201ENST00000325404 PCOTHQ58A44 107 aa11.74□□□□□ -0.53
SOX2-201ENST00000325404 DNAH8Q96JB1 4490 aa11.72□□□□□ -0.53
SOX2-201ENST00000325404 LOC101927531A0A1B0GV80 90 aa11.7□□□□□ -0.54
SOX2-201ENST00000325404 SSBP3-AS1Q7Z2R9 100 aa11.7□□□□□ -0.54
SOX2-201ENST00000325404 A0A087X002 238 aa11.69□□□□□ -0.54
SOX2-201ENST00000325404 KRTAP10-2P60368 255 aa11.69□□□□□ -0.54
SOX2-201ENST00000325404 NOTCH2NLQ7Z3S9 236 aa11.69□□□□□ -0.54
SOX2-201ENST00000325404 FRAS1Q86XX4 4008 aa11.67□□□□□ -0.54
SOX2-201ENST00000325404 C8orf87E5RJ46 101 aa11.66□□□□□ -0.54
SOX2-201ENST00000325404 Q75L30 129 aa11.66□□□□□ -0.54
SOX2-201ENST00000325404 PRR15LQ9BU68 103 aa11.66□□□□□ -0.54
SOX2-201ENST00000325404 HYDINQ4G0P3 5121 aa11.65□□□□□ -0.54
SOX2-201ENST00000325404 KRTAP13-3Q3SY46 172 aa11.64□□□□□ -0.55
SOX2-201ENST00000325404 DNAH11Q96DT5 4516 aa11.63□□□□□ -0.55
SOX2-201ENST00000325404 CHKB-CPT1BH3BT56 60 aa11.63□□□□□ -0.55
SOX2-201ENST00000325404 LINC01558Q9Y6Z2 57 aa11.62□□□□□ -0.55
SOX2-201ENST00000325404 CIRBP-AS1Q8TBR5 109 aa11.61□□□□□ -0.55
SOX2-201ENST00000325404 DNAH5Q8TE73 4624 aa11.6□□□□□ -0.55
SOX2-201ENST00000325404 HRES1P13985 223 aa11.59□□□□□ -0.55
SOX2-201ENST00000325404 SPINK6Q6UWN8 80 aa11.59□□□□□ -0.55
SOX2-201ENST00000325404 Q5W150 140 aa11.57□□□□□ -0.56
SOX2-201ENST00000325404 FAT2Q9NYQ8 4349 aa11.56□□□□□ -0.56
SOX2-201ENST00000325404 KRTAP10-1P60331 282 aa11.55□□□□□ -0.56
SOX2-201ENST00000325404 Q6ZSA8 131 aa11.54□□□□□ -0.56
SOX2-201ENST00000325404 SACSQ9NZJ4 4579 aa11.53□□□□□ -0.56
SOX2-201ENST00000325404 PKD1P98161 4303 aa11.51□□□□□ -0.57
SOX2-201ENST00000325404 SPAG11AQ6PDA7 123 aa11.5□□□□□ -0.57
SOX2-201ENST00000325404 LINC00313P59037 77 aa11.48□□□□□ -0.57
SOX2-201ENST00000325404 A6NED7 52 aa11.47□□□□□ -0.57
SOX2-201ENST00000325404 FAM229AH3BQW9 127 aa11.47□□□□□ -0.57
SOX2-201ENST00000325404 ATP11AUNQ6ZP68 121 aa11.46□□□□□ -0.57
SOX2-201ENST00000325404 A8MU10 97 aa11.45□□□□□ -0.58
SOX2-201ENST00000325404 ACYP2P14621 99 aa11.45□□□□□ -0.58
SOX2-201ENST00000325404 LCA10Q71F78 164 aa11.45□□□□□ -0.58
SOX2-201ENST00000325404 RBM12B-AS1Q9P1G2 102 aa11.45□□□□□ -0.58
SOX2-201ENST00000325404 CDC42SE1Q9NRR8 79 aa11.44□□□□□ -0.58
SOX2-201ENST00000325404 KRTAP13-2Q52LG2 175 aa11.44□□□□□ -0.58
SOX2-201ENST00000325404 KTN1-AS1Q86SY8 53 aa11.42□□□□□ -0.58
SOX2-201ENST00000325404 DMAC1Q96GE9 116 aa11.41□□□□□ -0.58
SOX2-201ENST00000325404 IGKV2-30P06310 120 aa11.36□□□□□ -0.59
SOX2-201ENST00000325404 KRTAP16-1A8MUX0 517 aa11.35□□□□□ -0.59
SOX2-201ENST00000325404 C4orf48Q5BLP8 95 aa11.35□□□□□ -0.59
SOX2-201ENST00000325404 PRR26Q8N8Z3 221 aa11.34□□□□□ -0.59
SOX2-201ENST00000325404 LRP1BQ9NZR2 4599 aa11.34□□□□□ -0.59
SOX2-201ENST00000325404 KRTAP1-4P0C5Y4 121 aa11.33□□□□□ -0.6
SOX2-201ENST00000325404 A0A1B0GVY2 172 aa11.3□□□□□ -0.6
SOX2-201ENST00000325404 SPTSSBQ8NFR3 76 aa11.3□□□□□ -0.6
SOX2-201ENST00000325404 RYR2Q92736 4967 aa11.29□□□□□ -0.6
SOX2-201ENST00000325404 PKHD1P08F94 4074 aa11.28□□□□□ -0.6
SOX2-201ENST00000325404 SPINK7P58062 85 aa11.28□□□□□ -0.6
SOX2-201ENST00000325404 A6NN06 94 aa11.26□□□□□ -0.61
SOX2-201ENST00000325404 DYNC1H1Q14204 4646 aaKnown RBP11.22□□□□□ -0.61
SOX2-201ENST00000325404 KMT2CQ8NEZ4 4911 aaKnown RBP11.22□□□□□ -0.61
SOX2-201ENST00000325404 SPINK1P00995 79 aa11.21□□□□□ -0.61
SOX2-201ENST00000325404 RETNLBQ9BQ08 111 aa11.2□□□□□ -0.62
SOX2-201ENST00000325404 VPS13BQ7Z7G8 4022 aa11.19□□□□□ -0.62
SOX2-201ENST00000325404 PLA2G1BP04054 148 aaKnown RBP11.17□□□□□ -0.62
SOX2-201ENST00000325404 TYMSOSQ8TAI1 123 aa11.16□□□□□ -0.62
SOX2-201ENST00000325404 RPS29P62273 56 aaKnown RBP11.15□□□□□ -0.62
SOX2-201ENST00000325404 SMR3BP02814 79 aaPredicted RBP11.11□□□□□ -0.63
SOX2-201ENST00000325404 A0A1B0GU69 56 aa11.11□□□□□ -0.63
SOX2-201ENST00000325404 IGKV2D-30A0A075B6S6 120 aa11.1□□□□□ -0.63
SOX2-201ENST00000325404 C7orf65Q6ZTY9 151 aa11.08□□□□□ -0.64
SOX2-201ENST00000325404 APOBP04114 4563 aaKnown RBP11.06□□□□□ -0.64
SOX2-201ENST00000325404 SPATA8Q6RVD6 105 aa11.03□□□□□ -0.64
SOX2-201ENST00000325404 LINC00304Q8N9R0 145 aa11.02□□□□□ -0.64
SOX2-201ENST00000325404 H3BS24 57 aa10.98□□□□□ -0.65
SOX2-201ENST00000325404 KRTAP10-4P60372 401 aaPredicted RBP10.97□□□□□ -0.65
SOX2-201ENST00000325404 FAT1Q14517 4588 aa10.97□□□□□ -0.65
SOX2-201ENST00000325404 UQCR11O14957 56 aa10.96□□□□□ -0.65
SOX2-201ENST00000325404 RYR3Q15413 4870 aa10.93□□□□□ -0.66
SOX2-201ENST00000325404 MIR22HGQ0VDD5 57 aa10.91□□□□□ -0.66
SOX2-201ENST00000325404 A8MUU9 505 aa10.87□□□□□ -0.67
SOX2-201ENST00000325404 C20orf166-AS1Q96NR2 134 aa10.87□□□□□ -0.67
SOX2-201ENST00000325404 Q8N1X5 172 aa10.81□□□□□ -0.68
SOX2-201ENST00000325404 Q5VSD8 79 aa10.76□□□□□ -0.69
SOX2-201ENST00000325404 PKHD1L1Q86WI1 4243 aa10.74□□□□□ -0.69
SOX2-201ENST00000325404 HSPG2P98160 4391 aa10.73□□□□□ -0.69
SOX2-201ENST00000325404 PRAC1Q96KF2 57 aa10.73□□□□□ -0.69
SOX2-201ENST00000325404 LINC01554Q52M75 96 aa10.71□□□□□ -0.69
SOX2-201ENST00000325404 RYR1P21817 5038 aa10.71□□□□□ -0.7
SOX2-201ENST00000325404 C9orf92A6NGG3 77 aa10.7□□□□□ -0.7
SOX2-201ENST00000325404 KRTAP3-1Q9BYR8 98 aa10.65□□□□□ -0.7
SOX2-201ENST00000325404 ADM2Q7Z4H4 148 aa10.61□□□□□ -0.71
SOX2-201ENST00000325404 KIAA1109Q2LD37 5005 aa10.59□□□□□ -0.71
SOX2-201ENST00000325404 KRTAP17-1Q9BYP8 105 aa10.56□□□□□ -0.72
SOX2-201ENST00000325404 KRTAP10-8P60410 259 aa10.56□□□□□ -0.72
SOX2-201ENST00000325404 EPPK1P58107 5090 aaKnown RBP10.54□□□□□ -0.72
SOX2-201ENST00000325404 COX6B2Q6YFQ2 88 aa10.53□□□□□ -0.72
SOX2-201ENST00000325404 LRP1Q07954 4544 aaKnown RBP10.53□□□□□ -0.72
SOX2-201ENST00000325404 FLG2Q5D862 2391 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 207.7 ms