RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 KRTAP17-1Q9BYP8 105 aa10.73□□□□□ -0.69
USP39-201ENST00000323701 PKHD1L1Q86WI1 4243 aa10.72□□□□□ -0.69
USP39-201ENST00000323701 PRR26Q8N8Z3 221 aa10.69□□□□□ -0.7
USP39-201ENST00000323701 A0A0U1RQV1 116 aa10.68□□□□□ -0.7
USP39-201ENST00000323701 CD164Q04900 197 aa10.67□□□□□ -0.7
USP39-201ENST00000323701 LRP1Q07954 4544 aaKnown RBP10.66□□□□□ -0.7
USP39-201ENST00000323701 CDK2AP2O75956 126 aa10.65□□□□□ -0.71
USP39-201ENST00000323701 A8MWP4 228 aa10.64□□□□□ -0.71
USP39-201ENST00000323701 TYMSOSQ8TAI1 123 aa10.64□□□□□ -0.71
USP39-201ENST00000323701 PRR15Q8IV56 129 aa10.63□□□□□ -0.71
USP39-201ENST00000323701 Q5VSD8 79 aa10.6□□□□□ -0.71
USP39-201ENST00000323701 FAM229AH3BQW9 127 aa10.59□□□□□ -0.71
USP39-201ENST00000323701 HCG22E2RYF7 251 aa10.58□□□□□ -0.72
USP39-201ENST00000323701 WFDC13Q8IUB5 93 aa10.58□□□□□ -0.72
USP39-201ENST00000323701 BRK1Q8WUW1 75 aa10.57□□□□□ -0.72
USP39-201ENST00000323701 TNXBP22105 4242 aa10.55□□□□□ -0.72
USP39-201ENST00000323701 MPLKIPQ8TAP9 179 aa10.55□□□□□ -0.72
USP39-201ENST00000323701 KRTAP29-1A8MX34 341 aaPredicted RBP10.54□□□□□ -0.72
USP39-201ENST00000323701 NOTCH2NLQ7Z3S9 236 aa10.54□□□□□ -0.72
USP39-201ENST00000323701 ASB16-AS1Q495Z4 193 aa10.53□□□□□ -0.72
USP39-201ENST00000323701 C1orf195Q5TG92 126 aa10.53□□□□□ -0.72
USP39-201ENST00000323701 MYCBP2O75592 4640 aa10.53□□□□□ -0.72
USP39-201ENST00000323701 MMP24-AS1A0A0U1RRL7 71 aa10.53□□□□□ -0.72
USP39-201ENST00000323701 IGHV6-1A0A0B4J1U7 121 aa10.52□□□□□ -0.72
USP39-201ENST00000323701 FLG2Q5D862 2391 aaPredicted RBP10.51□□□□□ -0.73
USP39-201ENST00000323701 A0A1B0GVX0 72 aa10.51□□□□□ -0.73
USP39-201ENST00000323701 NDUFB1O75438 58 aa10.51□□□□□ -0.73
USP39-201ENST00000323701 LINC00304Q8N9R0 145 aa10.51□□□□□ -0.73
USP39-201ENST00000323701 FAT3Q8TDW7 4589 aa10.5□□□□□ -0.73
USP39-201ENST00000323701 C4orf48Q5BLP8 95 aa10.5□□□□□ -0.73
USP39-201ENST00000323701 CASC2Q6XLA1 102 aa10.49□□□□□ -0.73
USP39-201ENST00000323701 SPINK1P00995 79 aa10.48□□□□□ -0.73
USP39-201ENST00000323701 hDV103S1A0JD37 113 aa10.48□□□□□ -0.73
USP39-201ENST00000323701 C8orf17Q9NRJ1 99 aa10.47□□□□□ -0.73
USP39-201ENST00000323701 ZCCHC13Q8WW36 166 aaKnown RBP10.46□□□□□ -0.73
USP39-201ENST00000323701 LIMD2Q9BT23 127 aa10.45□□□□□ -0.74
USP39-201ENST00000323701 Q8N1X5 172 aa10.42□□□□□ -0.74
USP39-201ENST00000323701 Q1T7F1 81 aa10.41□□□□□ -0.74
USP39-201ENST00000323701 C1orf64Q8NEQ6 169 aa10.4□□□□□ -0.74
USP39-201ENST00000323701 SPAG11AQ6PDA7 123 aa10.39□□□□□ -0.75
USP39-201ENST00000323701 RPS29P62273 56 aaKnown RBP10.37□□□□□ -0.75
USP39-201ENST00000323701 KRTAP10-8P60410 259 aa10.36□□□□□ -0.75
USP39-201ENST00000323701 CYP4F30PQ9H0H9 118 aa10.36□□□□□ -0.75
USP39-201ENST00000323701 KRTAP4-5Q9BYR2 181 aa10.35□□□□□ -0.75
USP39-201ENST00000323701 V9GYY9 64 aa10.34□□□□□ -0.75
USP39-201ENST00000323701 MRPL34Q9BQ48 92 aaKnown RBP10.32□□□□□ -0.76
USP39-201ENST00000323701 RETNLBQ9BQ08 111 aa10.32□□□□□ -0.76
USP39-201ENST00000323701 DMBT1Q9UGM3 2413 aaPredicted RBP10.32□□□□□ -0.76
USP39-201ENST00000323701 LINC00313P59037 77 aa10.3□□□□□ -0.76
USP39-201ENST00000323701 ABCA13Q86UQ4 5058 aa10.29□□□□□ -0.76
USP39-201ENST00000323701 LINC00208Q96KT6 92 aa10.29□□□□□ -0.76
USP39-201ENST00000323701 NDUFS5O43920 106 aa10.28□□□□□ -0.76
USP39-201ENST00000323701 MP68P56378 58 aa10.28□□□□□ -0.76
USP39-201ENST00000323701 PRR4Q16378 134 aa10.28□□□□□ -0.76
USP39-201ENST00000323701 BIRC6Q9NR09 4857 aa10.27□□□□□ -0.77
USP39-201ENST00000323701 TRAV22A0A0B4J277 110 aa10.27□□□□□ -0.77
USP39-201ENST00000323701 KRTAP16-1A8MUX0 517 aa10.27□□□□□ -0.77
USP39-201ENST00000323701 C8orf87E5RJ46 101 aa10.27□□□□□ -0.77
USP39-201ENST00000323701 H0Y9P7 68 aa10.27□□□□□ -0.77
USP39-201ENST00000323701 MT1HL1P0DM35 61 aa10.26□□□□□ -0.77
USP39-201ENST00000323701 PSPHP1O15172 72 aa10.24□□□□□ -0.77
USP39-201ENST00000323701 HERC2O95714 4834 aa10.2□□□□□ -0.78
USP39-201ENST00000323701 SEC61GP60059 68 aa10.2□□□□□ -0.78
USP39-201ENST00000323701 Q5W150 140 aa10.2□□□□□ -0.78
USP39-201ENST00000323701 Q8N9P0 234 aaPredicted RBP10.19□□□□□ -0.78
USP39-201ENST00000323701 TP53AIP1Q9HCN2 124 aa10.19□□□□□ -0.78
USP39-201ENST00000323701 PMAIP1Q13794 54 aa10.18□□□□□ -0.78
USP39-201ENST00000323701 SPANXA2-OT1Q8N9U9 137 aa10.18□□□□□ -0.78
USP39-201ENST00000323701 H3BPC8 53 aa10.17□□□□□ -0.78
USP39-201ENST00000323701 C9orf92A6NGG3 77 aa10.16□□□□□ -0.78
USP39-201ENST00000323701 A8MUN3 132 aa10.15□□□□□ -0.79
USP39-201ENST00000323701 KRTAP13-3Q3SY46 172 aa10.15□□□□□ -0.79
USP39-201ENST00000323701 Q5VV11 94 aa10.11□□□□□ -0.79
USP39-201ENST00000323701 PCOTHQ58A44 107 aa10.04□□□□□ -0.8
USP39-201ENST00000323701 CHKB-CPT1BH3BT56 60 aa10.01□□□□□ -0.81
USP39-201ENST00000323701 IGLV7-46A0A075B6I9 117 aa9.99□□□□□ -0.81
USP39-201ENST00000323701 PRR15LQ9BU68 103 aa9.99□□□□□ -0.81
USP39-201ENST00000323701 A8MU10 97 aa9.99□□□□□ -0.81
USP39-201ENST00000323701 C20orf166-AS1Q96NR2 134 aa9.98□□□□□ -0.81
USP39-201ENST00000323701 A8MUU9 505 aa9.97□□□□□ -0.81
USP39-201ENST00000323701 Q75L30 129 aa9.96□□□□□ -0.82
USP39-201ENST00000323701 PCLOQ9Y6V0 5065 aa9.95□□□□□ -0.82
USP39-201ENST00000323701 COA5Q86WW8 74 aa9.95□□□□□ -0.82
USP39-201ENST00000323701 LOC101927531A0A1B0GV80 90 aa9.95□□□□□ -0.82
USP39-201ENST00000323701 LPAP08519 4548 aa9.92□□□□□ -0.82
USP39-201ENST00000323701 IGKV2-30P06310 120 aa9.9□□□□□ -0.82
USP39-201ENST00000323701 ATP11AUNQ6ZP68 121 aa9.9□□□□□ -0.82
USP39-201ENST00000323701 LCA10Q71F78 164 aa9.88□□□□□ -0.83
USP39-201ENST00000323701 IGKV2D-30A0A075B6S6 120 aa9.88□□□□□ -0.83
USP39-201ENST00000323701 KTN1-AS1Q86SY8 53 aa9.88□□□□□ -0.83
USP39-201ENST00000323701 A6NED7 52 aa9.87□□□□□ -0.83
USP39-201ENST00000323701 LRP2P98164 4655 aa9.86□□□□□ -0.83
USP39-201ENST00000323701 XP32Q5T750 250 aa9.85□□□□□ -0.83
USP39-201ENST00000323701 SPTSSBQ8NFR3 76 aa9.85□□□□□ -0.83
USP39-201ENST00000323701 CDC42SE1Q9NRR8 79 aa9.83□□□□□ -0.84
USP39-201ENST00000323701 LINC01558Q9Y6Z2 57 aa9.83□□□□□ -0.84
USP39-201ENST00000323701 J3QL48 77 aa9.81□□□□□ -0.84
USP39-201ENST00000323701 HRES1P13985 223 aa9.81□□□□□ -0.84
USP39-201ENST00000323701 A6NN06 94 aa9.79□□□□□ -0.84
USP39-201ENST00000323701 RPL37P61927 97 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms