RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 SPACA4Q8TDM5 124 aa2.84□□□□□ -1.95
PTPN13-201ENST00000316707 KRTAP13-3Q3SY46 172 aa2.84□□□□□ -1.95
PTPN13-201ENST00000316707 COX6B2Q6YFQ2 88 aa2.84□□□□□ -1.95
PTPN13-201ENST00000316707 IGLV5-52A0A0A0MRZ9 124 aa2.83□□□□□ -1.96
PTPN13-201ENST00000316707 STAB1Q9NY15 2570 aa2.83□□□□□ -1.96
PTPN13-201ENST00000316707 KRTAP24-1Q3LI83 254 aa2.83□□□□□ -1.96
PTPN13-201ENST00000316707 Q5W150 140 aa2.83□□□□□ -1.96
PTPN13-201ENST00000316707 TENM1Q9UKZ4 2725 aa2.83□□□□□ -1.96
PTPN13-201ENST00000316707 COL6A5A8TX70 2615 aa2.82□□□□□ -1.96
PTPN13-201ENST00000316707 K7EIL1 84 aa2.82□□□□□ -1.96
PTPN13-201ENST00000316707 CIRBP-AS1Q8TBR5 109 aa2.82□□□□□ -1.96
PTPN13-201ENST00000316707 IGKV2-30P06310 120 aa2.82□□□□□ -1.96
PTPN13-201ENST00000316707 RTL8CO15255 209 aa2.81□□□□□ -1.96
PTPN13-201ENST00000316707 NBEAL1Q6ZS30 2694 aa2.81□□□□□ -1.96
PTPN13-201ENST00000316707 PRAC1Q96KF2 57 aa2.81□□□□□ -1.96
PTPN13-201ENST00000316707 NOTCH2NLQ7Z3S9 236 aa2.8□□□□□ -1.96
PTPN13-201ENST00000316707 Q6ZRN7 208 aaPredicted RBP2.8□□□□□ -1.96
PTPN13-201ENST00000316707 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.8□□□□□ -1.96
PTPN13-201ENST00000316707 PDZD2O15018 2839 aa2.8□□□□□ -1.96
PTPN13-201ENST00000316707 IGKV2D-30A0A075B6S6 120 aa2.8□□□□□ -1.96
PTPN13-201ENST00000316707 A0A087WTM6 91 aa2.8□□□□□ -1.96
PTPN13-201ENST00000316707 PANO1I0J062 215 aa2.79□□□□□ -1.96
PTPN13-201ENST00000316707 NDUFAF8A1L188 74 aa2.78□□□□□ -1.96
PTPN13-201ENST00000316707 LY6G6CO95867 125 aa2.77□□□□□ -1.97
PTPN13-201ENST00000316707 CRYBG3Q68DQ2 2970 aa2.77□□□□□ -1.97
PTPN13-201ENST00000316707 ANAPC11Q9NYG5 84 aa2.76□□□□□ -1.97
PTPN13-201ENST00000316707 ADM2Q7Z4H4 148 aa2.75□□□□□ -1.97
PTPN13-201ENST00000316707 J3QL48 77 aa2.75□□□□□ -1.97
PTPN13-201ENST00000316707 KMT2BQ9UMN6 2715 aaPredicted RBP2.74□□□□□ -1.97
PTPN13-201ENST00000316707 ZNF469Q96JG9 3925 aaPredicted RBP2.74□□□□□ -1.97
PTPN13-201ENST00000316707 CSMD3Q7Z407 3707 aa2.74□□□□□ -1.97
PTPN13-201ENST00000316707 CSAG1Q6PB30 78 aa2.73□□□□□ -1.97
PTPN13-201ENST00000316707 SEC61BP60468 96 aaKnown RBP2.73□□□□□ -1.97
PTPN13-201ENST00000316707 H1FX-AS1Q4G0G2 97 aa2.72□□□□□ -1.97
PTPN13-201ENST00000316707 KRTAP16-1A8MUX0 517 aa2.72□□□□□ -1.97
PTPN13-201ENST00000316707 TENM4Q6N022 2769 aa2.71□□□□□ -1.98
PTPN13-201ENST00000316707 P0C880 135 aa2.7□□□□□ -1.98
PTPN13-201ENST00000316707 A0A1B0GU33 70 aa2.7□□□□□ -1.98
PTPN13-201ENST00000316707 PKD1L1Q8TDX9 2849 aa2.7□□□□□ -1.98
PTPN13-201ENST00000316707 RPS29P62273 56 aaKnown RBP2.69□□□□□ -1.98
PTPN13-201ENST00000316707 OTOGQ6ZRI0 2925 aa2.69□□□□□ -1.98
PTPN13-201ENST00000316707 KRTAP25-1Q3LHN0 102 aa2.69□□□□□ -1.98
PTPN13-201ENST00000316707 SRRM2Q9UQ35 2752 aaKnown RBP2.69□□□□□ -1.98
PTPN13-201ENST00000316707 ANK3Q12955 4377 aaKnown RBP2.69□□□□□ -1.98
PTPN13-201ENST00000316707 A8MUU9 505 aa2.69□□□□□ -1.98
PTPN13-201ENST00000316707 KRTAP13-2Q52LG2 175 aa2.68□□□□□ -1.98
PTPN13-201ENST00000316707 A0A0D9SG42 100 aa2.67□□□□□ -1.98
PTPN13-201ENST00000316707 Q6ZSA8 131 aa2.67□□□□□ -1.98
PTPN13-201ENST00000316707 ROMO1P60602 79 aa2.67□□□□□ -1.98
PTPN13-201ENST00000316707 Q8N1X5 172 aa2.66□□□□□ -1.98
PTPN13-201ENST00000316707 KRTAP21-3Q3LHN1 58 aa2.66□□□□□ -1.98
PTPN13-201ENST00000316707 TYMSOSQ8TAI1 123 aa2.65□□□□□ -1.98
PTPN13-201ENST00000316707 M0R2T5 61 aa2.65□□□□□ -1.99
PTPN13-201ENST00000316707 LINC00304Q8N9R0 145 aa2.65□□□□□ -1.99
PTPN13-201ENST00000316707 KRTAP1-4P0C5Y4 121 aa2.64□□□□□ -1.99
PTPN13-201ENST00000316707 H0YAA0 97 aa2.63□□□□□ -1.99
PTPN13-201ENST00000316707 C20orf166-AS1Q96NR2 134 aa2.62□□□□□ -1.99
PTPN13-201ENST00000316707 ANK2Q01484 3957 aa2.61□□□□□ -1.99
PTPN13-201ENST00000316707 RPL37P61927 97 aaKnown RBP2.61□□□□□ -1.99
PTPN13-201ENST00000316707 TENM2Q9NT68 2774 aa2.6□□□□□ -1.99
PTPN13-201ENST00000316707 C9orf92A6NGG3 77 aa2.59□□□□□ -2
PTPN13-201ENST00000316707 FBN1P35555 2871 aaKnown RBP2.59□□□□□ -2
PTPN13-201ENST00000316707 TGP01266 2768 aa2.59□□□□□ -2
PTPN13-201ENST00000316707 BIRC6Q9NR09 4857 aa2.59□□□□□ -2
PTPN13-201ENST00000316707 KRTAP10-2P60368 255 aa2.58□□□□□ -2
PTPN13-201ENST00000316707 KRTAP10-1P60331 282 aa2.58□□□□□ -2
PTPN13-201ENST00000316707 KRTAP3-1Q9BYR8 98 aa2.56□□□□□ -2
PTPN13-201ENST00000316707 FLG2Q5D862 2391 aaPredicted RBP2.55□□□□□ -2
PTPN13-201ENST00000316707 MEGF8Q7Z7M0 2845 aa2.55□□□□□ -2
PTPN13-201ENST00000316707 RYR2Q92736 4967 aa2.53□□□□□ -2
PTPN13-201ENST00000316707 TRRAPQ9Y4A5 3859 aa2.52□□□□□ -2.01
PTPN13-201ENST00000316707 DMBT1Q9UGM3 2413 aaPredicted RBP2.52□□□□□ -2.01
PTPN13-201ENST00000316707 KRTAP10-6P60371 365 aaPredicted RBP2.49□□□□□ -2.01
PTPN13-201ENST00000316707 LYSTQ99698 3801 aa2.49□□□□□ -2.01
PTPN13-201ENST00000316707 PP632Q6XCG6 107 aa2.49□□□□□ -2.01
PTPN13-201ENST00000316707 R4GN34 69 aa2.48□□□□□ -2.01
PTPN13-201ENST00000316707 FBN3Q75N90 2809 aa2.48□□□□□ -2.01
PTPN13-201ENST00000316707 S4R3F8 94 aa2.47□□□□□ -2.01
PTPN13-201ENST00000316707 M0QZ58 72 aa2.47□□□□□ -2.01
PTPN13-201ENST00000316707 COL7A1Q02388 2944 aa2.46□□□□□ -2.01
PTPN13-201ENST00000316707 HUWE1Q7Z6Z7 4374 aaKnown RBP2.46□□□□□ -2.01
PTPN13-201ENST00000316707 TPRXLQ17RH7 258 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH1Q9P2D7 4330 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 HERC1Q15751 4861 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 PCLOQ9Y6V0 5065 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 HERC2O95714 4834 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH17Q9UFH2 4485 aa2.46□□□□□ -2.02
PTPN13-201ENST00000316707 Q5VSD8 79 aa2.45□□□□□ -2.02
PTPN13-201ENST00000316707 RYR1P21817 5038 aa2.45□□□□□ -2.02
PTPN13-201ENST00000316707 KRTAP3-2Q9BYR7 98 aa2.45□□□□□ -2.02
PTPN13-201ENST00000316707 PLECQ15149 4684 aaKnown RBP2.44□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH8Q96JB1 4490 aa2.44□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH10Q8IVF4 4471 aa2.44□□□□□ -2.02
PTPN13-201ENST00000316707 KRTAP15-1Q3LI76 137 aa2.43□□□□□ -2.02
PTPN13-201ENST00000316707 KRTAP13-4Q3LI77 160 aa2.43□□□□□ -2.02
PTPN13-201ENST00000316707 KRTAP3-3Q9BYR6 98 aa2.43□□□□□ -2.02
PTPN13-201ENST00000316707 VPS13DQ5THJ4 4388 aa2.43□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH3Q8TD57 4116 aa2.43□□□□□ -2.02
PTPN13-201ENST00000316707 XP32Q5T750 250 aa2.42□□□□□ -2.02
PTPN13-201ENST00000316707 SMR3BP02814 79 aaPredicted RBP2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms