RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 NOTCH2NLQ7Z3S9 236 aa10.62□□□□□ -0.71
CCDC43-201ENST00000315286 ZCCHC13Q8WW36 166 aaKnown RBP10.61□□□□□ -0.71
CCDC43-201ENST00000315286 Q5XG85 94 aa10.59□□□□□ -0.71
CCDC43-201ENST00000315286 TYMSOSQ8TAI1 123 aa10.59□□□□□ -0.71
CCDC43-201ENST00000315286 MP68P56378 58 aa10.57□□□□□ -0.72
CCDC43-201ENST00000315286 RPS28P62857 69 aaKnown RBP10.57□□□□□ -0.72
CCDC43-201ENST00000315286 H0Y9P7 68 aa10.56□□□□□ -0.72
CCDC43-201ENST00000315286 KRTAP10-4P60372 401 aaPredicted RBP10.56□□□□□ -0.72
CCDC43-201ENST00000315286 C1orf195Q5TG92 126 aa10.56□□□□□ -0.72
CCDC43-201ENST00000315286 MRPL34Q9BQ48 92 aaKnown RBP10.54□□□□□ -0.72
CCDC43-201ENST00000315286 PRR26Q8N8Z3 221 aa10.54□□□□□ -0.72
CCDC43-201ENST00000315286 LINC00208Q96KT6 92 aa10.54□□□□□ -0.72
CCDC43-201ENST00000315286 C4orf48Q5BLP8 95 aa10.53□□□□□ -0.72
CCDC43-201ENST00000315286 OXTP01178 125 aa10.51□□□□□ -0.73
CCDC43-201ENST00000315286 LIMD2Q9BT23 127 aa10.51□□□□□ -0.73
CCDC43-201ENST00000315286 TP53AIP1Q9HCN2 124 aa10.51□□□□□ -0.73
CCDC43-201ENST00000315286 NDUFS5O43920 106 aa10.51□□□□□ -0.73
CCDC43-201ENST00000315286 RYR3Q15413 4870 aa10.51□□□□□ -0.73
CCDC43-201ENST00000315286 TRAV22A0A0B4J277 110 aa10.5□□□□□ -0.73
CCDC43-201ENST00000315286 SVIPQ8NHG7 77 aa10.5□□□□□ -0.73
CCDC43-201ENST00000315286 SPINK1P00995 79 aa10.48□□□□□ -0.73
CCDC43-201ENST00000315286 ATP5EP56381 51 aaPredicted RBP10.48□□□□□ -0.73
CCDC43-201ENST00000315286 H3BPC8 53 aa10.48□□□□□ -0.73
CCDC43-201ENST00000315286 C8orf87E5RJ46 101 aa10.46□□□□□ -0.73
CCDC43-201ENST00000315286 C1orf64Q8NEQ6 169 aa10.46□□□□□ -0.74
CCDC43-201ENST00000315286 SERP1Q9Y6X1 66 aa10.46□□□□□ -0.74
CCDC43-201ENST00000315286 LINC00304Q8N9R0 145 aa10.45□□□□□ -0.74
CCDC43-201ENST00000315286 LINC00313P59037 77 aa10.44□□□□□ -0.74
CCDC43-201ENST00000315286 PKHD1L1Q86WI1 4243 aa10.41□□□□□ -0.74
CCDC43-201ENST00000315286 SPAG11AQ6PDA7 123 aa10.39□□□□□ -0.75
CCDC43-201ENST00000315286 HSPG2P98160 4391 aa10.37□□□□□ -0.75
CCDC43-201ENST00000315286 RPS29P62273 56 aaKnown RBP10.37□□□□□ -0.75
CCDC43-201ENST00000315286 PRR4Q16378 134 aa10.36□□□□□ -0.75
CCDC43-201ENST00000315286 Q5W150 140 aa10.36□□□□□ -0.75
CCDC43-201ENST00000315286 KRTAP16-1A8MUX0 517 aa10.34□□□□□ -0.75
CCDC43-201ENST00000315286 FAM229AH3BQW9 127 aa10.34□□□□□ -0.75
CCDC43-201ENST00000315286 Q8N9P0 234 aaPredicted RBP10.33□□□□□ -0.76
CCDC43-201ENST00000315286 KRTAP13-3Q3SY46 172 aa10.32□□□□□ -0.76
CCDC43-201ENST00000315286 CYP4F30PQ9H0H9 118 aa10.3□□□□□ -0.76
CCDC43-201ENST00000315286 PCOTHQ58A44 107 aa10.3□□□□□ -0.76
CCDC43-201ENST00000315286 SPANXA2-OT1Q8N9U9 137 aa10.29□□□□□ -0.76
CCDC43-201ENST00000315286 RYR1P21817 5038 aa10.27□□□□□ -0.77
CCDC43-201ENST00000315286 Q5VSD8 79 aa10.27□□□□□ -0.77
CCDC43-201ENST00000315286 RETNLBQ9BQ08 111 aa10.24□□□□□ -0.77
CCDC43-201ENST00000315286 SMIM26A0A096LP01 95 aa10.23□□□□□ -0.77
CCDC43-201ENST00000315286 LOC101927531A0A1B0GV80 90 aa10.23□□□□□ -0.77
CCDC43-201ENST00000315286 LRP1Q07954 4544 aaKnown RBP10.23□□□□□ -0.77
CCDC43-201ENST00000315286 IGLV7-46A0A075B6I9 117 aa10.22□□□□□ -0.77
CCDC43-201ENST00000315286 FP248Q71RG6 208 aaPredicted RBP10.21□□□□□ -0.78
CCDC43-201ENST00000315286 KRTAP17-1Q9BYP8 105 aa10.21□□□□□ -0.78
CCDC43-201ENST00000315286 TNXBP22105 4242 aa10.19□□□□□ -0.78
CCDC43-201ENST00000315286 KIAA1109Q2LD37 5005 aa10.17□□□□□ -0.78
CCDC43-201ENST00000315286 FLG2Q5D862 2391 aaPredicted RBP10.17□□□□□ -0.78
CCDC43-201ENST00000315286 Q8N1X5 172 aa10.16□□□□□ -0.78
CCDC43-201ENST00000315286 KRTAP10-8P60410 259 aa10.14□□□□□ -0.79
CCDC43-201ENST00000315286 C4orf26Q17RF5 130 aa10.14□□□□□ -0.79
CCDC43-201ENST00000315286 EPPK1P58107 5090 aaKnown RBP10.12□□□□□ -0.79
CCDC43-201ENST00000315286 IGKV2-30P06310 120 aa10.11□□□□□ -0.79
CCDC43-201ENST00000315286 C9orf92A6NGG3 77 aa10.11□□□□□ -0.79
CCDC43-201ENST00000315286 FAT3Q8TDW7 4589 aa10.1□□□□□ -0.79
CCDC43-201ENST00000315286 MPLKIPQ8TAP9 179 aa10.08□□□□□ -0.8
CCDC43-201ENST00000315286 HRES1P13985 223 aa10.05□□□□□ -0.8
CCDC43-201ENST00000315286 COA5Q86WW8 74 aa10.05□□□□□ -0.8
CCDC43-201ENST00000315286 IGKV2D-30A0A075B6S6 120 aa10.03□□□□□ -0.8
CCDC43-201ENST00000315286 DMBT1Q9UGM3 2413 aaPredicted RBP10.02□□□□□ -0.8
CCDC43-201ENST00000315286 A8MUU9 505 aa10.01□□□□□ -0.81
CCDC43-201ENST00000315286 C20orf166-AS1Q96NR2 134 aa10.01□□□□□ -0.81
CCDC43-201ENST00000315286 MYCBP2O75592 4640 aa9.99□□□□□ -0.81
CCDC43-201ENST00000315286 Q1T7F1 81 aa9.96□□□□□ -0.81
CCDC43-201ENST00000315286 MT1HL1P0DM35 61 aa9.94□□□□□ -0.82
CCDC43-201ENST00000315286 DMAC1Q96GE9 116 aa9.92□□□□□ -0.82
CCDC43-201ENST00000315286 C7orf65Q6ZTY9 151 aa9.91□□□□□ -0.82
CCDC43-201ENST00000315286 ACYP2P14621 99 aa9.91□□□□□ -0.82
CCDC43-201ENST00000315286 Q75L30 129 aa9.86□□□□□ -0.83
CCDC43-201ENST00000315286 V9GYY9 64 aa9.85□□□□□ -0.83
CCDC43-201ENST00000315286 PSPHP1O15172 72 aa9.84□□□□□ -0.83
CCDC43-201ENST00000315286 KRTAP4-5Q9BYR2 181 aa9.81□□□□□ -0.84
CCDC43-201ENST00000315286 A8MUN3 132 aa9.79□□□□□ -0.84
CCDC43-201ENST00000315286 CHKB-CPT1BH3BT56 60 aa9.77□□□□□ -0.85
CCDC43-201ENST00000315286 SPINK7P58062 85 aa9.77□□□□□ -0.85
CCDC43-201ENST00000315286 XP32Q5T750 250 aa9.73□□□□□ -0.85
CCDC43-201ENST00000315286 PRR15LQ9BU68 103 aa9.73□□□□□ -0.85
CCDC43-201ENST00000315286 Q5VV11 94 aa9.72□□□□□ -0.85
CCDC43-201ENST00000315286 LINC01558Q9Y6Z2 57 aa9.72□□□□□ -0.85
CCDC43-201ENST00000315286 RPL37P61927 97 aaKnown RBP9.71□□□□□ -0.85
CCDC43-201ENST00000315286 ATP11AUNQ6ZP68 121 aa9.71□□□□□ -0.85
CCDC43-201ENST00000315286 BRK1Q8WUW1 75 aa9.65□□□□□ -0.86
CCDC43-201ENST00000315286 KRTAP3-1Q9BYR8 98 aa9.64□□□□□ -0.87
CCDC43-201ENST00000315286 ABCA13Q86UQ4 5058 aa9.62□□□□□ -0.87
CCDC43-201ENST00000315286 TPRXLQ17RH7 258 aa9.56□□□□□ -0.88
CCDC43-201ENST00000315286 PRO0628Q9UI54 55 aa9.56□□□□□ -0.88
CCDC43-201ENST00000315286 COX6B2Q6YFQ2 88 aa9.55□□□□□ -0.88
CCDC43-201ENST00000315286 HERC2O95714 4834 aa9.54□□□□□ -0.88
CCDC43-201ENST00000315286 LRP2P98164 4655 aa9.54□□□□□ -0.88
CCDC43-201ENST00000315286 BIRC6Q9NR09 4857 aa9.54□□□□□ -0.88
CCDC43-201ENST00000315286 LPAP08519 4548 aa9.52□□□□□ -0.89
CCDC43-201ENST00000315286 A6NED7 52 aa9.49□□□□□ -0.89
CCDC43-201ENST00000315286 A0A1B0GU69 56 aa9.48□□□□□ -0.89
CCDC43-201ENST00000315286 A8MU10 97 aa9.46□□□□□ -0.89
CCDC43-201ENST00000315286 J3QL48 77 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms