RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PCP4L1A6NKN8 68 aa9.82□□□□□ -0.84
LIME1-201ENST00000309546 C8orf87E5RJ46 101 aa9.82□□□□□ -0.84
LIME1-201ENST00000309546 BAALC-AS2P0C853 105 aa9.82□□□□□ -0.84
LIME1-201ENST00000309546 KRTAP9-8Q9BYQ0 159 aa9.81□□□□□ -0.84
LIME1-201ENST00000309546 RBM12B-AS1Q9P1G2 102 aa9.81□□□□□ -0.84
LIME1-201ENST00000309546 HRES1P13985 223 aa9.8□□□□□ -0.84
LIME1-201ENST00000309546 C9JAW5 83 aa9.79□□□□□ -0.84
LIME1-201ENST00000309546 NAA38Q9BRA0 125 aaKnown RBP9.77□□□□□ -0.85
LIME1-201ENST00000309546 C9orf118A6NHY6 69 aa9.76□□□□□ -0.85
LIME1-201ENST00000309546 J3KT08 172 aa9.76□□□□□ -0.85
LIME1-201ENST00000309546 TAX1BP3O14907 124 aa9.76□□□□□ -0.85
LIME1-201ENST00000309546 C21orf62-AS1Q17RA5 79 aa9.75□□□□□ -0.85
LIME1-201ENST00000309546 COL5A1-AS1Q5SY13 56 aa9.75□□□□□ -0.85
LIME1-201ENST00000309546 LYRM7Q5U5X0 104 aa9.75□□□□□ -0.85
LIME1-201ENST00000309546 MPLKIPQ8TAP9 179 aa9.75□□□□□ -0.85
LIME1-201ENST00000309546 Q6ZQT0 140 aa9.73□□□□□ -0.85
LIME1-201ENST00000309546 ATXN8Q156A1 80 aa9.72□□□□□ -0.85
LIME1-201ENST00000309546 ZCCHC13Q8WW36 166 aaKnown RBP9.72□□□□□ -0.85
LIME1-201ENST00000309546 NDUFB1O75438 58 aa9.7□□□□□ -0.86
LIME1-201ENST00000309546 MT2AP02795 61 aa9.69□□□□□ -0.86
LIME1-201ENST00000309546 A0A1W2PPM0 123 aa9.68□□□□□ -0.86
LIME1-201ENST00000309546 JMJD7-PLA2G4BH0Y9G9 81 aa9.68□□□□□ -0.86
LIME1-201ENST00000309546 USH2AO75445 5202 aa9.67□□□□□ -0.86
LIME1-201ENST00000309546 LOC110117498A0A087WWA1 95 aa9.65□□□□□ -0.86
LIME1-201ENST00000309546 SPINK7P58062 85 aa9.65□□□□□ -0.86
LIME1-201ENST00000309546 MTURNQ8N3F0 131 aa9.65□□□□□ -0.86
LIME1-201ENST00000309546 A8MWP4 228 aa9.64□□□□□ -0.87
LIME1-201ENST00000309546 C14orf132Q9NPU4 83 aa9.64□□□□□ -0.87
LIME1-201ENST00000309546 C8orf17Q9NRJ1 99 aa9.64□□□□□ -0.87
LIME1-201ENST00000309546 Q8N9P0 234 aaPredicted RBP9.63□□□□□ -0.87
LIME1-201ENST00000309546 MT1FP04733 61 aa9.62□□□□□ -0.87
LIME1-201ENST00000309546 SSPOA2VEC9 5147 aa9.61□□□□□ -0.87
LIME1-201ENST00000309546 IGKV3D-7A0A0C4DH55 119 aa9.6□□□□□ -0.87
LIME1-201ENST00000309546 A0A1B0GW54 56 aa9.6□□□□□ -0.87
LIME1-201ENST00000309546 PDE6GP18545 87 aa9.6□□□□□ -0.87
LIME1-201ENST00000309546 SPCS1Q9Y6A9 102 aa9.59□□□□□ -0.87
LIME1-201ENST00000309546 KRTAP10-10P60014 251 aa9.58□□□□□ -0.88
LIME1-201ENST00000309546 Q6ZVQ6 151 aa9.55□□□□□ -0.88
LIME1-201ENST00000309546 WFDC13Q8IUB5 93 aa9.55□□□□□ -0.88
LIME1-201ENST00000309546 NREPQ16612 68 aa9.54□□□□□ -0.88
LIME1-201ENST00000309546 PRR15Q8IV56 129 aa9.52□□□□□ -0.89
LIME1-201ENST00000309546 H3BT86 120 aa9.51□□□□□ -0.89
LIME1-201ENST00000309546 K7EP34 96 aa9.51□□□□□ -0.89
LIME1-201ENST00000309546 LCE2BO14633 110 aa9.51□□□□□ -0.89
LIME1-201ENST00000309546 KRTAP9-3Q9BYQ3 159 aa9.5□□□□□ -0.89
LIME1-201ENST00000309546 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.49□□□□□ -0.89
LIME1-201ENST00000309546 GTF2H5Q6ZYL4 71 aa9.49□□□□□ -0.89
LIME1-201ENST00000309546 MMP24-AS1A0A0U1RRL7 71 aa9.48□□□□□ -0.89
LIME1-201ENST00000309546 KRTAP9-7A8MTY7 169 aa9.48□□□□□ -0.89
LIME1-201ENST00000309546 TMEM254Q8TBM7 123 aa9.47□□□□□ -0.89
LIME1-201ENST00000309546 MRPL34Q9BQ48 92 aaKnown RBP9.47□□□□□ -0.89
LIME1-201ENST00000309546 K7EQZ3 153 aa9.44□□□□□ -0.9
LIME1-201ENST00000309546 NDUFS5O43920 106 aa9.44□□□□□ -0.9
LIME1-201ENST00000309546 hDV103S1A0JD37 113 aa9.42□□□□□ -0.9
LIME1-201ENST00000309546 KRTAP19-1Q8IUB9 90 aa9.42□□□□□ -0.9
LIME1-201ENST00000309546 PRO0461Q9UI25 63 aa9.41□□□□□ -0.9
LIME1-201ENST00000309546 FCGBPQ9Y6R7 5405 aaPredicted RBP9.4□□□□□ -0.9
LIME1-201ENST00000309546 SMCPP49901 116 aaPredicted RBP9.4□□□□□ -0.9
LIME1-201ENST00000309546 F8W1H4 67 aa9.38□□□□□ -0.91
LIME1-201ENST00000309546 BPY2O14599 106 aa9.36□□□□□ -0.91
LIME1-201ENST00000309546 IGKV2D-30A0A075B6S6 120 aa9.33□□□□□ -0.92
LIME1-201ENST00000309546 IGKV2-30P06310 120 aa9.33□□□□□ -0.92
LIME1-201ENST00000309546 A0A1B0GV90 55 aa9.31□□□□□ -0.92
LIME1-201ENST00000309546 H1FX-AS1Q4G0G2 97 aa9.31□□□□□ -0.92
LIME1-201ENST00000309546 Q8N9L7 120 aa9.3□□□□□ -0.92
LIME1-201ENST00000309546 C7orf65Q6ZTY9 151 aa9.28□□□□□ -0.92
LIME1-201ENST00000309546 Q5W150 140 aa9.27□□□□□ -0.93
LIME1-201ENST00000309546 CASC2Q6XLA1 102 aa9.26□□□□□ -0.93
LIME1-201ENST00000309546 MACF1Q9UPN3 7388 aaKnown RBP9.24□□□□□ -0.93
LIME1-201ENST00000309546 HCG22E2RYF7 251 aa9.24□□□□□ -0.93
LIME1-201ENST00000309546 ETDBQ3ZM63 59 aa9.24□□□□□ -0.93
LIME1-201ENST00000309546 LINC00846Q9NV44 126 aa9.21□□□□□ -0.94
LIME1-201ENST00000309546 SYNE2Q8WXH0 6885 aaKnown RBP9.19□□□□□ -0.94
LIME1-201ENST00000309546 KRTAP19-6Q3LI70 58 aa9.18□□□□□ -0.94
LIME1-201ENST00000309546 C4orf26Q17RF5 130 aa9.16□□□□□ -0.94
LIME1-201ENST00000309546 CXCL6P80162 114 aa9.15□□□□□ -0.94
LIME1-201ENST00000309546 UBL5Q9BZL1 73 aa9.14□□□□□ -0.95
LIME1-201ENST00000309546 ACYP1P07311 99 aa9.04□□□□□ -0.96
LIME1-201ENST00000309546 C5orf47Q569G3 176 aa9.04□□□□□ -0.96
LIME1-201ENST00000309546 FAM240AA0A1B0GVK7 77 aa9.02□□□□□ -0.97
LIME1-201ENST00000309546 FAM236AA0A1B0GUQ0 79 aa8.99□□□□□ -0.97
LIME1-201ENST00000309546 FAM236BA0A1B0GV22 79 aa8.99□□□□□ -0.97
LIME1-201ENST00000309546 S4R3F8 94 aa8.99□□□□□ -0.97
LIME1-201ENST00000309546 C1orf64Q8NEQ6 169 aa8.97□□□□□ -0.97
LIME1-201ENST00000309546 KRTAP3-1Q9BYR8 98 aa8.97□□□□□ -0.97
LIME1-201ENST00000309546 J3QR89 54 aa8.95□□□□□ -0.98
LIME1-201ENST00000309546 TP53AIP1Q9HCN2 124 aa8.93□□□□□ -0.98
LIME1-201ENST00000309546 CSAG1Q6PB30 78 aa8.91□□□□□ -0.98
LIME1-201ENST00000309546 LCA10Q71F78 164 aa8.91□□□□□ -0.98
LIME1-201ENST00000309546 ATP5EP2Q5VTU8 51 aa8.85□□□□□ -0.99
LIME1-201ENST00000309546 LINC00643Q86TS7 51 aa8.84□□□□□ -0.99
LIME1-201ENST00000309546 KRTAP6-3Q3LI67 103 aa8.81□□□□□ -1
LIME1-201ENST00000309546 K7ERU9 68 aa8.8□□□□□ -1
LIME1-201ENST00000309546 Q5VV11 94 aa8.79□□□□□ -1
LIME1-201ENST00000309546 MT1BP07438 61 aa8.78□□□□□ -1
LIME1-201ENST00000309546 CYP4F30PQ9H0H9 118 aa8.78□□□□□ -1
LIME1-201ENST00000309546 A6NN06 94 aa8.77□□□□□ -1.01
LIME1-201ENST00000309546 SPRR2GQ9BYE4 73 aa8.76□□□□□ -1.01
LIME1-201ENST00000309546 TRAV22A0A0B4J277 110 aa8.75□□□□□ -1.01
LIME1-201ENST00000309546 KLKP1Q107X0 134 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 1679.2 ms