RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 BAHCC1Q9P281 2608 aa2.43□□□□□ -2.02
USH2A-201ENST00000307340 PANO1I0J062 215 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 R4GN34 69 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 A0A1W2PNN7 141 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 KRTAP26-1Q6PEX3 210 aa2.42□□□□□ -2.02
USH2A-201ENST00000307340 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.42□□□□□ -2.02
USH2A-201ENST00000307340 Q5W150 140 aa2.4□□□□□ -2.02
USH2A-201ENST00000307340 MYO15AQ9UKN7 3530 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 PDZD2O15018 2839 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 HIVEP1P15822 2718 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 SPINK7P58062 85 aa2.4□□□□□ -2.03
USH2A-201ENST00000307340 C9orf92A6NGG3 77 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 PKD1L1Q8TDX9 2849 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 DCHS1Q96JQ0 3298 aa2.39□□□□□ -2.03
USH2A-201ENST00000307340 H1FX-AS1Q4G0G2 97 aa2.38□□□□□ -2.03
USH2A-201ENST00000307340 MUC3AQ02505 3323 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 KRTAP13-1Q8IUC0 172 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 TGP01266 2768 aa2.37□□□□□ -2.03
USH2A-201ENST00000307340 KRTAP10-3P60369 221 aa2.36□□□□□ -2.03
USH2A-201ENST00000307340 LAMA5O15230 3695 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 A8MUU9 505 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 C20orf166-AS1Q96NR2 134 aa2.35□□□□□ -2.03
USH2A-201ENST00000307340 PRAC1Q96KF2 57 aa2.34□□□□□ -2.03
USH2A-201ENST00000307340 ADM2Q7Z4H4 148 aa2.34□□□□□ -2.03
USH2A-201ENST00000307340 TNP1P09430 55 aa2.34□□□□□ -2.04
USH2A-201ENST00000307340 Q6ZRN7 208 aaPredicted RBP2.34□□□□□ -2.04
USH2A-201ENST00000307340 TENM1Q9UKZ4 2725 aa2.33□□□□□ -2.04
USH2A-201ENST00000307340 BSNQ9UPA5 3926 aa2.33□□□□□ -2.04
USH2A-201ENST00000307340 KRTAP25-1Q3LHN0 102 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 A6NN06 94 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 TPRXLQ17RH7 258 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 TENM2Q9NT68 2774 aa2.32□□□□□ -2.04
USH2A-201ENST00000307340 H0YAA0 97 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 PLAC4Q8WY50 150 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 ASPMQ8IZT6 3477 aa2.31□□□□□ -2.04
USH2A-201ENST00000307340 FBN1P35555 2871 aaKnown RBP2.3□□□□□ -2.04
USH2A-201ENST00000307340 KRTAP23-1A1A580 65 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 TENM3Q9P273 2699 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 Q8N1X5 172 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 ZFHX4Q86UP3 3567 aa2.29□□□□□ -2.04
USH2A-201ENST00000307340 TENM4Q6N022 2769 aa2.28□□□□□ -2.04
USH2A-201ENST00000307340 Q8NDZ9 215 aa2.28□□□□□ -2.05
USH2A-201ENST00000307340 Q5VSD8 79 aa2.28□□□□□ -2.05
USH2A-201ENST00000307340 PRO2289Q9P1D8 64 aa2.27□□□□□ -2.05
USH2A-201ENST00000307340 DMDP11532 3685 aa2.27□□□□□ -2.05
USH2A-201ENST00000307340 NBPF19A0A087WUL8 3843 aa2.26□□□□□ -2.05
USH2A-201ENST00000307340 A0A0G2JQZ4 141 aa2.26□□□□□ -2.05
USH2A-201ENST00000307340 SPENQ96T58 3664 aaKnown RBP2.25□□□□□ -2.05
USH2A-201ENST00000307340 CYSTM1Q9H1C7 97 aa2.25□□□□□ -2.05
USH2A-201ENST00000307340 RELNP78509 3460 aa2.25□□□□□ -2.05
USH2A-201ENST00000307340 KRTAP1-5Q9BYS1 174 aa2.24□□□□□ -2.05
USH2A-201ENST00000307340 M0R2T5 61 aa2.24□□□□□ -2.05
USH2A-201ENST00000307340 KRTAP11-1Q8IUC1 163 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 A0A0D9SG42 100 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 AKAP9Q99996 3911 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 VPS13CQ709C8 3753 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 COL7A1Q02388 2944 aa2.23□□□□□ -2.05
USH2A-201ENST00000307340 SMG1Q96Q15 3661 aaKnown RBP2.22□□□□□ -2.05
USH2A-201ENST00000307340 SRRM2Q9UQ35 2752 aaKnown RBP2.22□□□□□ -2.05
USH2A-201ENST00000307340 OTOGQ6ZRI0 2925 aa2.22□□□□□ -2.05
USH2A-201ENST00000307340 MEGF8Q7Z7M0 2845 aa2.19□□□□□ -2.06
USH2A-201ENST00000307340 ZFHX3Q15911 3703 aa2.19□□□□□ -2.06
USH2A-201ENST00000307340 CSMD1Q96PZ7 3565 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 INE1O15225 51 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP10-1P60331 282 aa2.18□□□□□ -2.06
USH2A-201ENST00000307340 SMR3BP02814 79 aaPredicted RBP2.17□□□□□ -2.06
USH2A-201ENST00000307340 CSMD2Q7Z408 3487 aa2.17□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP19-4Q3LI73 84 aa2.16□□□□□ -2.06
USH2A-201ENST00000307340 KRTAP7-1Q8IUC3 87 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP10-2P60368 255 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP1-4P0C5Y4 121 aa2.15□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-3Q3SY46 172 aa2.14□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-2Q52LG2 175 aa2.14□□□□□ -2.07
USH2A-201ENST00000307340 TRRAPQ9Y4A5 3859 aa2.13□□□□□ -2.07
USH2A-201ENST00000307340 XP32Q5T750 250 aa2.13□□□□□ -2.07
USH2A-201ENST00000307340 P0C880 135 aa2.12□□□□□ -2.07
USH2A-201ENST00000307340 SVEP1Q4LDE5 3571 aa2.12□□□□□ -2.07
USH2A-201ENST00000307340 C10orf95Q9H7T3 257 aa2.11□□□□□ -2.07
USH2A-201ENST00000307340 KRTAP13-4Q3LI77 160 aa2.08□□□□□ -2.08
USH2A-201ENST00000307340 CUBNO60494 3623 aa2.07□□□□□ -2.08
USH2A-201ENST00000307340 ZNF469Q96JG9 3925 aaPredicted RBP2.05□□□□□ -2.08
USH2A-201ENST00000307340 KRTAP10-8P60410 259 aa2.05□□□□□ -2.08
USH2A-201ENST00000307340 FBN3Q75N90 2809 aa2.03□□□□□ -2.08
USH2A-201ENST00000307340 MT3P25713 68 aa2.02□□□□□ -2.09
USH2A-201ENST00000307340 A0A1B0GVY2 172 aa2□□□□□ -2.09
USH2A-201ENST00000307340 ANK2Q01484 3957 aa1.99□□□□□ -2.09
USH2A-201ENST00000307340 A8MU10 97 aa1.98□□□□□ -2.09
USH2A-201ENST00000307340 KRTAP12-1P59990 96 aa1.97□□□□□ -2.09
USH2A-201ENST00000307340 DNAH3Q8TD57 4116 aa1.96□□□□□ -2.09
USH2A-201ENST00000307340 DNAH7Q8WXX0 4024 aa1.96□□□□□ -2.1
USH2A-201ENST00000307340 HECTD4Q9Y4D8 3996 aa1.95□□□□□ -2.1
USH2A-201ENST00000307340 CMYA5Q8N3K9 4069 aa1.94□□□□□ -2.1
USH2A-201ENST00000307340 LYSTQ99698 3801 aa1.93□□□□□ -2.1
USH2A-201ENST00000307340 VPS13BQ7Z7G8 4022 aa1.91□□□□□ -2.1
USH2A-201ENST00000307340 KRTAP10-10P60014 251 aa1.9□□□□□ -2.11
USH2A-201ENST00000307340 ALMS1Q8TCU4 4167 aa1.89□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP10-6P60371 365 aaPredicted RBP1.89□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP12-2P59991 146 aa1.89□□□□□ -2.11
USH2A-201ENST00000307340 FRAS1Q86XX4 4008 aa1.88□□□□□ -2.11
USH2A-201ENST00000307340 CSMD3Q7Z407 3707 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms