RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 A8MWP4 228 aa7.17□□□□□ -1.26
CCDC88B-201ENST00000301897 C8orf87E5RJ46 101 aa7.17□□□□□ -1.26
CCDC88B-201ENST00000301897 PSMB2P49721 201 aa7.17□□□□□ -1.26
CCDC88B-201ENST00000301897 COX6CP09669 75 aa7.16□□□□□ -1.26
CCDC88B-201ENST00000301897 DEFB116Q30KQ4 102 aa7.15□□□□□ -1.26
CCDC88B-201ENST00000301897 TRACP01848 142 aa7.14□□□□□ -1.27
CCDC88B-201ENST00000301897 ORMDL1Q9P0S3 153 aa7.14□□□□□ -1.27
CCDC88B-201ENST00000301897 TMEM256-PLSCR3K7ERE1 68 aa7.13□□□□□ -1.27
CCDC88B-201ENST00000301897 DNAL4O96015 105 aa7.13□□□□□ -1.27
CCDC88B-201ENST00000301897 KRTAP6-3Q3LI67 103 aa7.13□□□□□ -1.27
CCDC88B-201ENST00000301897 ZCCHC13Q8WW36 166 aaKnown RBP7.13□□□□□ -1.27
CCDC88B-201ENST00000301897 A0A1B0GVX0 72 aa7.12□□□□□ -1.27
CCDC88B-201ENST00000301897 CCKP06307 115 aa7.12□□□□□ -1.27
CCDC88B-201ENST00000301897 SPINK7P58062 85 aa7.12□□□□□ -1.27
CCDC88B-201ENST00000301897 UBE2V1Q13404 147 aa7.11□□□□□ -1.27
CCDC88B-201ENST00000301897 A0A1B0GV72 72 aa7.09□□□□□ -1.27
CCDC88B-201ENST00000301897 SMIM6P0DI80 62 aa7.09□□□□□ -1.27
CCDC88B-201ENST00000301897 SCGB1C2P0DMR2 95 aa7.07□□□□□ -1.28
CCDC88B-201ENST00000301897 J3KT08 172 aa7.06□□□□□ -1.28
CCDC88B-201ENST00000301897 C21orf62-AS1Q17RA5 79 aa7.06□□□□□ -1.28
CCDC88B-201ENST00000301897 M0R143 59 aa7.04□□□□□ -1.28
CCDC88B-201ENST00000301897 WFDC13Q8IUB5 93 aa7.04□□□□□ -1.28
CCDC88B-201ENST00000301897 Q8N9P0 234 aaPredicted RBP7.04□□□□□ -1.28
CCDC88B-201ENST00000301897 LOC105371267A0A1B0GV96 52 aa7.03□□□□□ -1.28
CCDC88B-201ENST00000301897 BAALC-AS2P0C853 105 aa7.02□□□□□ -1.29
CCDC88B-201ENST00000301897 VPS25Q9BRG1 176 aa7.02□□□□□ -1.29
CCDC88B-201ENST00000301897 NDUFB1O75438 58 aa7.01□□□□□ -1.29
CCDC88B-201ENST00000301897 RBM3P98179 157 aaKnown RBP7.01□□□□□ -1.29
CCDC88B-201ENST00000301897 LYRM7Q5U5X0 104 aa7□□□□□ -1.29
CCDC88B-201ENST00000301897 DSCR8Q96T75 97 aa6.99□□□□□ -1.29
CCDC88B-201ENST00000301897 NAA38Q9BRA0 125 aaKnown RBP6.99□□□□□ -1.29
CCDC88B-201ENST00000301897 ATXN8Q156A1 80 aa6.98□□□□□ -1.29
CCDC88B-201ENST00000301897 TSTD3H0UI37 97 aa6.96□□□□□ -1.3
CCDC88B-201ENST00000301897 C9JAW5 83 aa6.94□□□□□ -1.3
CCDC88B-201ENST00000301897 H1FX-AS1Q4G0G2 97 aa6.94□□□□□ -1.3
CCDC88B-201ENST00000301897 Q6ZQT0 140 aa6.93□□□□□ -1.3
CCDC88B-201ENST00000301897 C8orf17Q9NRJ1 99 aa6.93□□□□□ -1.3
CCDC88B-201ENST00000301897 JMJD7-PLA2G4BH0Y9G9 81 aa6.92□□□□□ -1.3
CCDC88B-201ENST00000301897 IGKV3D-7A0A0C4DH55 119 aa6.91□□□□□ -1.3
CCDC88B-201ENST00000301897 LOC110117498A0A087WWA1 95 aa6.9□□□□□ -1.3
CCDC88B-201ENST00000301897 A0A1B0GW54 56 aa6.89□□□□□ -1.31
CCDC88B-201ENST00000301897 TAX1BP3O14907 124 aa6.89□□□□□ -1.31
CCDC88B-201ENST00000301897 BATFQ16520 125 aa6.89□□□□□ -1.31
CCDC88B-201ENST00000301897 Q6ZVQ6 151 aa6.89□□□□□ -1.31
CCDC88B-201ENST00000301897 C9orf118A6NHY6 69 aa6.88□□□□□ -1.31
CCDC88B-201ENST00000301897 PDE6GP18545 87 aa6.87□□□□□ -1.31
CCDC88B-201ENST00000301897 NEBP20929 6669 aa6.86□□□□□ -1.31
CCDC88B-201ENST00000301897 A0A1W2PPM0 123 aa6.84□□□□□ -1.31
CCDC88B-201ENST00000301897 C14orf132Q9NPU4 83 aa6.84□□□□□ -1.31
CCDC88B-201ENST00000301897 PRR15Q8IV56 129 aa6.82□□□□□ -1.32
CCDC88B-201ENST00000301897 H3BT86 120 aa6.81□□□□□ -1.32
CCDC88B-201ENST00000301897 TMEM254Q8TBM7 123 aa6.81□□□□□ -1.32
CCDC88B-201ENST00000301897 A6NN06 94 aa6.8□□□□□ -1.32
CCDC88B-201ENST00000301897 MRPL34Q9BQ48 92 aaKnown RBP6.8□□□□□ -1.32
CCDC88B-201ENST00000301897 MUC12Q9UKN1 5478 aa6.8□□□□□ -1.32
CCDC88B-201ENST00000301897 MMP24-AS1A0A0U1RRL7 71 aa6.76□□□□□ -1.33
CCDC88B-201ENST00000301897 KRTAP20-1Q3LI63 56 aa6.76□□□□□ -1.33
CCDC88B-201ENST00000301897 C7orf65Q6ZTY9 151 aa6.76□□□□□ -1.33
CCDC88B-201ENST00000301897 IGKV2D-30A0A075B6S6 120 aa6.75□□□□□ -1.33
CCDC88B-201ENST00000301897 hDV103S1A0JD37 113 aa6.75□□□□□ -1.33
CCDC88B-201ENST00000301897 NDUFS5O43920 106 aa6.75□□□□□ -1.33
CCDC88B-201ENST00000301897 IGKV2-30P06310 120 aa6.75□□□□□ -1.33
CCDC88B-201ENST00000301897 NREPQ16612 68 aa6.75□□□□□ -1.33
CCDC88B-201ENST00000301897 SMCPP49901 116 aaPredicted RBP6.73□□□□□ -1.33
CCDC88B-201ENST00000301897 Q5VV11 94 aa6.73□□□□□ -1.33
CCDC88B-201ENST00000301897 FAM236AA0A1B0GUQ0 79 aa6.72□□□□□ -1.33
CCDC88B-201ENST00000301897 FAM236BA0A1B0GV22 79 aa6.72□□□□□ -1.33
CCDC88B-201ENST00000301897 SPCS1Q9Y6A9 102 aa6.72□□□□□ -1.33
CCDC88B-201ENST00000301897 COL5A1-AS1Q5SY13 56 aa6.7□□□□□ -1.34
CCDC88B-201ENST00000301897 MT1BP07438 61 aa6.69□□□□□ -1.34
CCDC88B-201ENST00000301897 PRO0461Q9UI25 63 aa6.69□□□□□ -1.34
CCDC88B-201ENST00000301897 Q5W150 140 aa6.67□□□□□ -1.34
CCDC88B-201ENST00000301897 K7EQZ3 153 aa6.66□□□□□ -1.34
CCDC88B-201ENST00000301897 KRTAP19-8Q3LI54 63 aa6.66□□□□□ -1.34
CCDC88B-201ENST00000301897 C5orf47Q569G3 176 aa6.66□□□□□ -1.34
CCDC88B-201ENST00000301897 KRTAP5-9P26371 169 aa6.65□□□□□ -1.34
CCDC88B-201ENST00000301897 KRTAP10-5P60370 271 aa6.65□□□□□ -1.34
CCDC88B-201ENST00000301897 C4orf26Q17RF5 130 aa6.65□□□□□ -1.34
CCDC88B-201ENST00000301897 SPRR2GQ9BYE4 73 aa6.65□□□□□ -1.34
CCDC88B-201ENST00000301897 K7EP34 96 aa6.64□□□□□ -1.35
CCDC88B-201ENST00000301897 MDN1Q9NU22 5596 aa6.62□□□□□ -1.35
CCDC88B-201ENST00000301897 BPY2O14599 106 aa6.62□□□□□ -1.35
CCDC88B-201ENST00000301897 CSAG1Q6PB30 78 aa6.61□□□□□ -1.35
CCDC88B-201ENST00000301897 KMT2DO14686 5537 aa6.61□□□□□ -1.35
CCDC88B-201ENST00000301897 S4R3F8 94 aa6.6□□□□□ -1.35
CCDC88B-201ENST00000301897 CXCL6P80162 114 aa6.57□□□□□ -1.36
CCDC88B-201ENST00000301897 HCG22E2RYF7 251 aa6.56□□□□□ -1.36
CCDC88B-201ENST00000301897 CASC2Q6XLA1 102 aa6.56□□□□□ -1.36
CCDC88B-201ENST00000301897 Q8N9L7 120 aa6.56□□□□□ -1.36
CCDC88B-201ENST00000301897 PCP4L1A6NKN8 68 aa6.54□□□□□ -1.36
CCDC88B-201ENST00000301897 KLKP1Q107X0 134 aa6.54□□□□□ -1.36
CCDC88B-201ENST00000301897 GTF2H5Q6ZYL4 71 aa6.54□□□□□ -1.36
CCDC88B-201ENST00000301897 KRTAP3-1Q9BYR8 98 aa6.54□□□□□ -1.36
CCDC88B-201ENST00000301897 F8W1H4 67 aa6.53□□□□□ -1.36
CCDC88B-201ENST00000301897 UBL5Q9BZL1 73 aa6.52□□□□□ -1.37
CCDC88B-201ENST00000301897 LCA10Q71F78 164 aa6.51□□□□□ -1.37
CCDC88B-201ENST00000301897 IMUPQ9GZP8 106 aa6.51□□□□□ -1.37
CCDC88B-201ENST00000301897 KRTAP2-3P0C7H8 128 aa6.5□□□□□ -1.37
CCDC88B-201ENST00000301897 C1orf64Q8NEQ6 169 aa6.5□□□□□ -1.37
CCDC88B-201ENST00000301897 KRTAP2-4Q9BYR9 128 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms