RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 KRTAP10-2P60368 255 aa6.54□□□□□ -1.36
SHROOM3-201ENST00000296043 TNP1P09430 55 aa6.52□□□□□ -1.37
SHROOM3-201ENST00000296043 Q5VSD8 79 aa6.51□□□□□ -1.37
SHROOM3-201ENST00000296043 DCHS2Q6V1P9 2916 aa6.5□□□□□ -1.37
SHROOM3-201ENST00000296043 RANBP2P49792 3224 aaKnown RBP6.5□□□□□ -1.37
SHROOM3-201ENST00000296043 TNRC18O15417 2968 aaPredicted RBP6.47□□□□□ -1.37
SHROOM3-201ENST00000296043 KRTAP10-8P60410 259 aa6.47□□□□□ -1.37
SHROOM3-201ENST00000296043 FBN2P35556 2912 aa6.46□□□□□ -1.37
SHROOM3-201ENST00000296043 PP632Q6XCG6 107 aa6.46□□□□□ -1.37
SHROOM3-201ENST00000296043 KRTAP7-1Q8IUC3 87 aa6.44□□□□□ -1.38
SHROOM3-201ENST00000296043 ZZEF1O43149 2961 aa6.44□□□□□ -1.38
SHROOM3-201ENST00000296043 VWFP04275 2813 aa6.43□□□□□ -1.38
SHROOM3-201ENST00000296043 WDFY4Q6ZS81 3184 aa6.41□□□□□ -1.38
SHROOM3-201ENST00000296043 KRTAP13-2Q52LG2 175 aa6.4□□□□□ -1.39
SHROOM3-201ENST00000296043 ADGRG4Q8IZF6 3080 aa6.33□□□□□ -1.4
SHROOM3-201ENST00000296043 DMXL1Q9Y485 3027 aa6.33□□□□□ -1.4
SHROOM3-201ENST00000296043 HTTP42858 3142 aa6.33□□□□□ -1.4
SHROOM3-201ENST00000296043 MXRA5Q9NR99 2828 aa6.33□□□□□ -1.4
SHROOM3-201ENST00000296043 KRTAP13-1Q8IUC0 172 aa6.32□□□□□ -1.4
SHROOM3-201ENST00000296043 ATMQ13315 3056 aa6.31□□□□□ -1.4
SHROOM3-201ENST00000296043 LAMA1P25391 3075 aa6.3□□□□□ -1.4
SHROOM3-201ENST00000296043 PKD1L1Q8TDX9 2849 aa6.3□□□□□ -1.4
SHROOM3-201ENST00000296043 CELSR1Q9NYQ6 3014 aa6.29□□□□□ -1.4
SHROOM3-201ENST00000296043 RPS29P62273 56 aaKnown RBP6.28□□□□□ -1.4
SHROOM3-201ENST00000296043 Q6ZRN7 208 aaPredicted RBP6.27□□□□□ -1.41
SHROOM3-201ENST00000296043 TENM4Q6N022 2769 aa6.24□□□□□ -1.41
SHROOM3-201ENST00000296043 HRNRQ86YZ3 2850 aaPredicted RBP6.23□□□□□ -1.41
SHROOM3-201ENST00000296043 XIRP2A4UGR9 3374 aa6.22□□□□□ -1.41
SHROOM3-201ENST00000296043 BOD1L1Q8NFC6 3051 aa6.22□□□□□ -1.41
SHROOM3-201ENST00000296043 ZFHX3Q15911 3703 aa6.19□□□□□ -1.42
SHROOM3-201ENST00000296043 COL6A3P12111 3177 aa6.18□□□□□ -1.42
SHROOM3-201ENST00000296043 CELSR3Q9NYQ7 3312 aa6.17□□□□□ -1.42
SHROOM3-201ENST00000296043 REV3LO60673 3130 aa6.16□□□□□ -1.42
SHROOM3-201ENST00000296043 TPRXLQ17RH7 258 aa6.16□□□□□ -1.42
SHROOM3-201ENST00000296043 TENM2Q9NT68 2774 aa6.12□□□□□ -1.43
SHROOM3-201ENST00000296043 KRTAP12-2P59991 146 aa6.11□□□□□ -1.43
SHROOM3-201ENST00000296043 MKI67P46013 3256 aaKnown RBP6.08□□□□□ -1.44
SHROOM3-201ENST00000296043 A0A1B0GVY2 172 aa6.07□□□□□ -1.44
SHROOM3-201ENST00000296043 COL7A1Q02388 2944 aa6.06□□□□□ -1.44
SHROOM3-201ENST00000296043 UNC80Q8N2C7 3258 aa6□□□□□ -1.45
SHROOM3-201ENST00000296043 CFAP47Q6ZTR5 3102 aa5.99□□□□□ -1.45
SHROOM3-201ENST00000296043 XP32Q5T750 250 aa5.97□□□□□ -1.45
SHROOM3-201ENST00000296043 MEGF8Q7Z7M0 2845 aa5.97□□□□□ -1.45
SHROOM3-201ENST00000296043 FBN3Q75N90 2809 aa5.91□□□□□ -1.46
SHROOM3-201ENST00000296043 VCANP13611 3396 aa5.91□□□□□ -1.46
SHROOM3-201ENST00000296043 KRTAP13-4Q3LI77 160 aa5.9□□□□□ -1.47
SHROOM3-201ENST00000296043 DNAH14Q0VDD8 3507 aa5.89□□□□□ -1.47
SHROOM3-201ENST00000296043 KRTAP13-3Q3SY46 172 aa5.89□□□□□ -1.47
SHROOM3-201ENST00000296043 KRTAP15-1Q3LI76 137 aa5.89□□□□□ -1.47
SHROOM3-201ENST00000296043 KRTAP12-1P59990 96 aa5.87□□□□□ -1.47
SHROOM3-201ENST00000296043 KRTAP1-4P0C5Y4 121 aa5.87□□□□□ -1.47
SHROOM3-201ENST00000296043 SPTBN5Q9NRC6 3674 aaKnown RBP5.85□□□□□ -1.47
SHROOM3-201ENST00000296043 OTOGQ6ZRI0 2925 aa5.82□□□□□ -1.48
SHROOM3-201ENST00000296043 KRTAP10-10P60014 251 aa5.82□□□□□ -1.48
SHROOM3-201ENST00000296043 LAMA3Q16787 3333 aa5.81□□□□□ -1.48
SHROOM3-201ENST00000296043 BRCA2P51587 3418 aa5.81□□□□□ -1.48
SHROOM3-201ENST00000296043 INE1O15225 51 aa5.81□□□□□ -1.48
SHROOM3-201ENST00000296043 PRO2289Q9P1D8 64 aa5.79□□□□□ -1.48
SHROOM3-201ENST00000296043 USP34Q70CQ2 3546 aa5.75□□□□□ -1.49
SHROOM3-201ENST00000296043 FBN1P35555 2871 aaKnown RBP5.72□□□□□ -1.49
SHROOM3-201ENST00000296043 MYO15AQ9UKN7 3530 aa5.7□□□□□ -1.5
SHROOM3-201ENST00000296043 SPEGQ15772 3267 aa5.68□□□□□ -1.5
SHROOM3-201ENST00000296043 SMG1Q96Q15 3661 aaKnown RBP5.65□□□□□ -1.51
SHROOM3-201ENST00000296043 ZFHX4Q86UP3 3567 aa5.65□□□□□ -1.51
SHROOM3-201ENST00000296043 NBPF19A0A087WUL8 3843 aa5.63□□□□□ -1.51
SHROOM3-201ENST00000296043 WDFY3Q8IZQ1 3526 aa5.59□□□□□ -1.51
SHROOM3-201ENST00000296043 KRTAP3-1Q9BYR8 98 aa5.59□□□□□ -1.51
SHROOM3-201ENST00000296043 KRTAP10-6P60371 365 aaPredicted RBP5.56□□□□□ -1.52
SHROOM3-201ENST00000296043 CDH23Q9H251 3354 aa5.55□□□□□ -1.52
SHROOM3-201ENST00000296043 SZT2Q5T011 3432 aa5.53□□□□□ -1.52
SHROOM3-201ENST00000296043 LOC400499M0QZD8 3231 aa5.52□□□□□ -1.53
SHROOM3-201ENST00000296043 EYSQ5T1H1 3165 aa5.5□□□□□ -1.53
SHROOM3-201ENST00000296043 DMDP11532 3685 aa5.46□□□□□ -1.53
SHROOM3-201ENST00000296043 ALMS1Q8TCU4 4167 aa5.44□□□□□ -1.54
SHROOM3-201ENST00000296043 LAMA5O15230 3695 aa5.41□□□□□ -1.54
SHROOM3-201ENST00000296043 SPENQ96T58 3664 aaKnown RBP5.4□□□□□ -1.55
SHROOM3-201ENST00000296043 CSMD1Q96PZ7 3565 aa5.38□□□□□ -1.55
SHROOM3-201ENST00000296043 CRCT1Q9UGL9 99 aa5.37□□□□□ -1.55
SHROOM3-201ENST00000296043 VPS13CQ709C8 3753 aa5.34□□□□□ -1.55
SHROOM3-201ENST00000296043 ASPMQ8IZT6 3477 aa5.34□□□□□ -1.56
SHROOM3-201ENST00000296043 KRTAP3-2Q9BYR7 98 aa5.32□□□□□ -1.56
SHROOM3-201ENST00000296043 DCHS1Q96JQ0 3298 aa5.3□□□□□ -1.56
SHROOM3-201ENST00000296043 AKAP9Q99996 3911 aa5.29□□□□□ -1.56
SHROOM3-201ENST00000296043 KRTAP10-12P60413 245 aa5.26□□□□□ -1.57
SHROOM3-201ENST00000296043 RELNP78509 3460 aa5.25□□□□□ -1.57
SHROOM3-201ENST00000296043 TRRAPQ9Y4A5 3859 aa5.24□□□□□ -1.57
SHROOM3-201ENST00000296043 KRTAP3-3Q9BYR6 98 aa5.21□□□□□ -1.58
SHROOM3-201ENST00000296043 KRTAP12-3P60328 96 aa5.17□□□□□ -1.58
SHROOM3-201ENST00000296043 CSMD3Q7Z407 3707 aa5.13□□□□□ -1.59
SHROOM3-201ENST00000296043 KRTAP23-1A1A580 65 aa5.11□□□□□ -1.59
SHROOM3-201ENST00000296043 KRTAP10-5P60370 271 aa5.11□□□□□ -1.59
SHROOM3-201ENST00000296043 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
SHROOM3-201ENST00000296043 CUBNO60494 3623 aa5.04□□□□□ -1.6
SHROOM3-201ENST00000296043 BSNQ9UPA5 3926 aa4.99□□□□□ -1.61
SHROOM3-201ENST00000296043 SVEP1Q4LDE5 3571 aa4.97□□□□□ -1.61
SHROOM3-201ENST00000296043 LYSTQ99698 3801 aa4.89□□□□□ -1.63
SHROOM3-201ENST00000296043 DNAH3Q8TD57 4116 aa4.88□□□□□ -1.63
SHROOM3-201ENST00000296043 LORP23490 312 aaPredicted RBP4.87□□□□□ -1.63
SHROOM3-201ENST00000296043 MUC3AQ02505 3323 aa4.81□□□□□ -1.64
SHROOM3-201ENST00000296043 HECTD4Q9Y4D8 3996 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms