RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 CCDC179H3BU77 68 aa13.04□□□□□ -0.32
PTX3-201ENST00000295927 KRTAP29-1A8MX34 341 aaPredicted RBP13.03□□□□□ -0.32
PTX3-201ENST00000295927 RPS29P62273 56 aaKnown RBP13.03□□□□□ -0.32
PTX3-201ENST00000295927 TRAV7A0A075B6U4 112 aa13.03□□□□□ -0.32
PTX3-201ENST00000295927 CASC2Q6XLA1 102 aa13.03□□□□□ -0.32
PTX3-201ENST00000295927 UQCRQO14949 82 aa13.01□□□□□ -0.33
PTX3-201ENST00000295927 C8orf17Q9NRJ1 99 aa13.01□□□□□ -0.33
PTX3-201ENST00000295927 OCR1Q9BZK8 76 aa13□□□□□ -0.33
PTX3-201ENST00000295927 LRP1Q07954 4544 aaKnown RBP12.96□□□□□ -0.33
PTX3-201ENST00000295927 hDV103S1A0JD37 113 aa12.96□□□□□ -0.33
PTX3-201ENST00000295927 NOTCH2NLQ7Z3S9 236 aa12.96□□□□□ -0.33
PTX3-201ENST00000295927 KRTAP10-8P60410 259 aa12.96□□□□□ -0.34
PTX3-201ENST00000295927 TNXBP22105 4242 aa12.91□□□□□ -0.34
PTX3-201ENST00000295927 FAT3Q8TDW7 4589 aa12.9□□□□□ -0.35
PTX3-201ENST00000295927 C8orf87E5RJ46 101 aa12.88□□□□□ -0.35
PTX3-201ENST00000295927 FLG2Q5D862 2391 aaPredicted RBP12.88□□□□□ -0.35
PTX3-201ENST00000295927 TMEM254Q8TBM7 123 aa12.86□□□□□ -0.35
PTX3-201ENST00000295927 MRPL34Q9BQ48 92 aaKnown RBP12.85□□□□□ -0.35
PTX3-201ENST00000295927 LINC00313P59037 77 aa12.84□□□□□ -0.35
PTX3-201ENST00000295927 C20orf197Q8N268 126 aa12.84□□□□□ -0.35
PTX3-201ENST00000295927 KRTAP4-5Q9BYR2 181 aa12.81□□□□□ -0.36
PTX3-201ENST00000295927 CYSTM1Q9H1C7 97 aa12.78□□□□□ -0.36
PTX3-201ENST00000295927 NDUFS5O43920 106 aa12.77□□□□□ -0.37
PTX3-201ENST00000295927 MT1HL1P0DM35 61 aa12.77□□□□□ -0.37
PTX3-201ENST00000295927 RETNLBQ9BQ08 111 aa12.77□□□□□ -0.37
PTX3-201ENST00000295927 MYCBP2O75592 4640 aa12.76□□□□□ -0.37
PTX3-201ENST00000295927 SNURFQ9Y675 71 aa12.76□□□□□ -0.37
PTX3-201ENST00000295927 C5orf47Q569G3 176 aa12.75□□□□□ -0.37
PTX3-201ENST00000295927 KLKP1Q107X0 134 aa12.74□□□□□ -0.37
PTX3-201ENST00000295927 TP53AIP1Q9HCN2 124 aa12.74□□□□□ -0.37
PTX3-201ENST00000295927 KRTAP16-1A8MUX0 517 aa12.72□□□□□ -0.37
PTX3-201ENST00000295927 A0A0U1RQV1 116 aa12.71□□□□□ -0.37
PTX3-201ENST00000295927 BIRC6Q9NR09 4857 aa12.69□□□□□ -0.38
PTX3-201ENST00000295927 OXTP01178 125 aa12.69□□□□□ -0.38
PTX3-201ENST00000295927 H0Y9P7 68 aa12.67□□□□□ -0.38
PTX3-201ENST00000295927 Q8N9P0 234 aaPredicted RBP12.67□□□□□ -0.38
PTX3-201ENST00000295927 DMBT1Q9UGM3 2413 aaPredicted RBP12.66□□□□□ -0.38
PTX3-201ENST00000295927 MP68P56378 58 aa12.66□□□□□ -0.38
PTX3-201ENST00000295927 TRAV22A0A0B4J277 110 aa12.65□□□□□ -0.38
PTX3-201ENST00000295927 ZCCHC13Q8WW36 166 aaKnown RBP12.61□□□□□ -0.39
PTX3-201ENST00000295927 LINC00208Q96KT6 92 aa12.6□□□□□ -0.39
PTX3-201ENST00000295927 C9orf92A6NGG3 77 aa12.6□□□□□ -0.39
PTX3-201ENST00000295927 H7BZZ5 65 aa12.59□□□□□ -0.39
PTX3-201ENST00000295927 H3BPC8 53 aa12.57□□□□□ -0.4
PTX3-201ENST00000295927 Q5W150 140 aa12.57□□□□□ -0.4
PTX3-201ENST00000295927 HERC2O95714 4834 aa12.57□□□□□ -0.4
PTX3-201ENST00000295927 NDUFC1O43677 76 aa12.56□□□□□ -0.4
PTX3-201ENST00000295927 FP248Q71RG6 208 aaPredicted RBP12.55□□□□□ -0.4
PTX3-201ENST00000295927 C1orf64Q8NEQ6 169 aa12.54□□□□□ -0.4
PTX3-201ENST00000295927 KRTAP13-3Q3SY46 172 aa12.54□□□□□ -0.4
PTX3-201ENST00000295927 ABCA13Q86UQ4 5058 aa12.53□□□□□ -0.4
PTX3-201ENST00000295927 TMEM258P61165 79 aa12.51□□□□□ -0.41
PTX3-201ENST00000295927 IGLV7-46A0A075B6I9 117 aa12.47□□□□□ -0.41
PTX3-201ENST00000295927 C20orf166-AS1Q96NR2 134 aa12.45□□□□□ -0.42
PTX3-201ENST00000295927 A8MUU9 505 aa12.44□□□□□ -0.42
PTX3-201ENST00000295927 LOC101927531A0A1B0GV80 90 aa12.4□□□□□ -0.42
PTX3-201ENST00000295927 FAM236DA0A1B0GTK5 79 aa12.39□□□□□ -0.43
PTX3-201ENST00000295927 FAM236CP0DP71 79 aa12.39□□□□□ -0.43
PTX3-201ENST00000295927 PRR4Q16378 134 aa12.38□□□□□ -0.43
PTX3-201ENST00000295927 J3QL48 77 aa12.37□□□□□ -0.43
PTX3-201ENST00000295927 PCOTHQ58A44 107 aa12.34□□□□□ -0.43
PTX3-201ENST00000295927 CYP4F30PQ9H0H9 118 aa12.33□□□□□ -0.44
PTX3-201ENST00000295927 Q75L30 129 aa12.33□□□□□ -0.44
PTX3-201ENST00000295927 IGKV2-30P06310 120 aa12.31□□□□□ -0.44
PTX3-201ENST00000295927 ATP5EP56381 51 aaPredicted RBP12.29□□□□□ -0.44
PTX3-201ENST00000295927 XP32Q5T750 250 aa12.27□□□□□ -0.44
PTX3-201ENST00000295927 IGKV2D-30A0A075B6S6 120 aa12.25□□□□□ -0.45
PTX3-201ENST00000295927 SPANXA2-OT1Q8N9U9 137 aa12.25□□□□□ -0.45
PTX3-201ENST00000295927 TPRXLQ17RH7 258 aa12.21□□□□□ -0.45
PTX3-201ENST00000295927 RPL37P61927 97 aaKnown RBP12.21□□□□□ -0.46
PTX3-201ENST00000295927 C7orf65Q6ZTY9 151 aa12.16□□□□□ -0.46
PTX3-201ENST00000295927 ATP11AUNQ6ZP68 121 aa12.15□□□□□ -0.46
PTX3-201ENST00000295927 HRES1P13985 223 aa12.14□□□□□ -0.47
PTX3-201ENST00000295927 SERP1Q9Y6X1 66 aa12.13□□□□□ -0.47
PTX3-201ENST00000295927 RPS28P62857 69 aaKnown RBP12.12□□□□□ -0.47
PTX3-201ENST00000295927 PCLOQ9Y6V0 5065 aa12.06□□□□□ -0.48
PTX3-201ENST00000295927 SPINK7P58062 85 aa12.06□□□□□ -0.48
PTX3-201ENST00000295927 LPAP08519 4548 aa12.06□□□□□ -0.48
PTX3-201ENST00000295927 LRP2P98164 4655 aa11.99□□□□□ -0.49
PTX3-201ENST00000295927 DMAC1Q96GE9 116 aa11.95□□□□□ -0.5
PTX3-201ENST00000295927 C4orf26Q17RF5 130 aa11.94□□□□□ -0.5
PTX3-201ENST00000295927 COA5Q86WW8 74 aa11.91□□□□□ -0.5
PTX3-201ENST00000295927 ACYP2P14621 99 aa11.89□□□□□ -0.51
PTX3-201ENST00000295927 SMIM26A0A096LP01 95 aa11.82□□□□□ -0.52
PTX3-201ENST00000295927 HERC1Q15751 4861 aa11.8□□□□□ -0.52
PTX3-201ENST00000295927 A8MUN3 132 aa11.78□□□□□ -0.52
PTX3-201ENST00000295927 SEC61BP60468 96 aaKnown RBP11.78□□□□□ -0.52
PTX3-201ENST00000295927 KRTAP3-1Q9BYR8 98 aa11.78□□□□□ -0.52
PTX3-201ENST00000295927 COX6B2Q6YFQ2 88 aa11.76□□□□□ -0.53
PTX3-201ENST00000295927 SVIPQ8NHG7 77 aa11.74□□□□□ -0.53
PTX3-201ENST00000295927 CHKB-CPT1BH3BT56 60 aa11.7□□□□□ -0.54
PTX3-201ENST00000295927 HMCN2Q8NDA2 5059 aa11.68□□□□□ -0.54
PTX3-201ENST00000295927 MPLKIPQ8TAP9 179 aa11.66□□□□□ -0.54
PTX3-201ENST00000295927 MUC17Q685J3 4493 aa11.63□□□□□ -0.55
PTX3-201ENST00000295927 KRTAP4-1Q9BYQ7 146 aa11.58□□□□□ -0.55
PTX3-201ENST00000295927 Q1T7F1 81 aa11.58□□□□□ -0.56
PTX3-201ENST00000295927 RBM12B-AS1Q9P1G2 102 aa11.53□□□□□ -0.56
PTX3-201ENST00000295927 V9GYY9 64 aa11.5□□□□□ -0.57
PTX3-201ENST00000295927 H1FX-AS1Q4G0G2 97 aa11.45□□□□□ -0.58
PTX3-201ENST00000295927 LINC01558Q9Y6Z2 57 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms