RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 ADM2Q7Z4H4 148 aa6.79□□□□□ -1.32
NPC1L1-201ENST00000289547 ZFHX4Q86UP3 3567 aa6.79□□□□□ -1.32
NPC1L1-201ENST00000289547 PDZD2O15018 2839 aa6.76□□□□□ -1.33
NPC1L1-201ENST00000289547 KRTAP4-16G5E9R7 235 aaPredicted RBP6.76□□□□□ -1.33
NPC1L1-201ENST00000289547 SPATA8Q6RVD6 105 aa6.75□□□□□ -1.33
NPC1L1-201ENST00000289547 ZANQ9Y493 2812 aa6.73□□□□□ -1.33
NPC1L1-201ENST00000289547 FBN2P35556 2912 aa6.73□□□□□ -1.33
NPC1L1-201ENST00000289547 MUC3AQ02505 3323 aa6.72□□□□□ -1.33
NPC1L1-201ENST00000289547 NIPBLQ6KC79 2804 aaeCLIP6.71□□□□□ -1.33
NPC1L1-201ENST00000289547 Q6ZSA8 131 aa6.71□□□□□ -1.34
NPC1L1-201ENST00000289547 PANO1I0J062 215 aa6.7□□□□□ -1.34
NPC1L1-201ENST00000289547 CSMD1Q96PZ7 3565 aa6.7□□□□□ -1.34
NPC1L1-201ENST00000289547 CRYBG3Q68DQ2 2970 aa6.69□□□□□ -1.34
NPC1L1-201ENST00000289547 STAB2Q8WWQ8 2551 aa6.69□□□□□ -1.34
NPC1L1-201ENST00000289547 ROMO1P60602 79 aa6.68□□□□□ -1.34
NPC1L1-201ENST00000289547 A0A0A0MQY5 61 aa6.67□□□□□ -1.34
NPC1L1-201ENST00000289547 SEC61BP60468 96 aaKnown RBP6.67□□□□□ -1.34
NPC1L1-201ENST00000289547 SMG1Q96Q15 3661 aaKnown RBP6.65□□□□□ -1.34
NPC1L1-201ENST00000289547 RPL37P61927 97 aaKnown RBP6.65□□□□□ -1.34
NPC1L1-201ENST00000289547 A0A087X002 238 aa6.64□□□□□ -1.35
NPC1L1-201ENST00000289547 LINC00483Q53H64 154 aa6.64□□□□□ -1.35
NPC1L1-201ENST00000289547 NOTCH2NLQ7Z3S9 236 aa6.64□□□□□ -1.35
NPC1L1-201ENST00000289547 KRTAP25-1Q3LHN0 102 aa6.63□□□□□ -1.35
NPC1L1-201ENST00000289547 DMDP11532 3685 aa6.63□□□□□ -1.35
NPC1L1-201ENST00000289547 H1FX-AS1Q4G0G2 97 aa6.63□□□□□ -1.35
NPC1L1-201ENST00000289547 MXRA5Q9NR99 2828 aa6.62□□□□□ -1.35
NPC1L1-201ENST00000289547 KRTAP16-1A8MUX0 517 aa6.61□□□□□ -1.35
NPC1L1-201ENST00000289547 OTOGQ6ZRI0 2925 aa6.61□□□□□ -1.35
NPC1L1-201ENST00000289547 LAMA5O15230 3695 aa6.57□□□□□ -1.36
NPC1L1-201ENST00000289547 DCHS2Q6V1P9 2916 aa6.57□□□□□ -1.36
NPC1L1-201ENST00000289547 RELNP78509 3460 aa6.57□□□□□ -1.36
NPC1L1-201ENST00000289547 RPS29P62273 56 aaKnown RBP6.54□□□□□ -1.36
NPC1L1-201ENST00000289547 NF1P21359 2839 aa6.54□□□□□ -1.36
NPC1L1-201ENST00000289547 M0R2T5 61 aa6.53□□□□□ -1.36
NPC1L1-201ENST00000289547 CAMK2N1Q7Z7J9 78 aa6.53□□□□□ -1.36
NPC1L1-201ENST00000289547 NDUFAF8A1L188 74 aa6.53□□□□□ -1.36
NPC1L1-201ENST00000289547 SPENQ96T58 3664 aaKnown RBP6.52□□□□□ -1.37
NPC1L1-201ENST00000289547 KRTAP7-1Q8IUC3 87 aa6.52□□□□□ -1.37
NPC1L1-201ENST00000289547 NBPF19A0A087WUL8 3843 aa6.51□□□□□ -1.37
NPC1L1-201ENST00000289547 SVEP1Q4LDE5 3571 aa6.5□□□□□ -1.37
NPC1L1-201ENST00000289547 KRTAP11-1Q8IUC1 163 aa6.5□□□□□ -1.37
NPC1L1-201ENST00000289547 S4R3F8 94 aa6.49□□□□□ -1.37
NPC1L1-201ENST00000289547 CELSR1Q9NYQ6 3014 aa6.47□□□□□ -1.37
NPC1L1-201ENST00000289547 CUBNO60494 3623 aa6.47□□□□□ -1.37
NPC1L1-201ENST00000289547 A0A1B0GVY2 172 aa6.44□□□□□ -1.38
NPC1L1-201ENST00000289547 ANK3Q12955 4377 aaKnown RBP6.44□□□□□ -1.38
NPC1L1-201ENST00000289547 KRTAP13-1Q8IUC0 172 aa6.43□□□□□ -1.38
NPC1L1-201ENST00000289547 A8MUU9 505 aa6.42□□□□□ -1.38
NPC1L1-201ENST00000289547 R4GN34 69 aa6.41□□□□□ -1.38
NPC1L1-201ENST00000289547 KRTAP13-2Q52LG2 175 aa6.38□□□□□ -1.39
NPC1L1-201ENST00000289547 TENM2Q9NT68 2774 aa6.34□□□□□ -1.39
NPC1L1-201ENST00000289547 M0QZ58 72 aa6.32□□□□□ -1.4
NPC1L1-201ENST00000289547 FBN1P35555 2871 aaKnown RBP6.31□□□□□ -1.4
NPC1L1-201ENST00000289547 BSNQ9UPA5 3926 aa6.3□□□□□ -1.4
NPC1L1-201ENST00000289547 TENM1Q9UKZ4 2725 aa6.29□□□□□ -1.4
NPC1L1-201ENST00000289547 ZFHX3Q15911 3703 aa6.28□□□□□ -1.4
NPC1L1-201ENST00000289547 C20orf166-AS1Q96NR2 134 aa6.27□□□□□ -1.41
NPC1L1-201ENST00000289547 KRTAP1-4P0C5Y4 121 aa6.25□□□□□ -1.41
NPC1L1-201ENST00000289547 TENM3Q9P273 2699 aa6.22□□□□□ -1.41
NPC1L1-201ENST00000289547 C10orf95Q9H7T3 257 aa6.2□□□□□ -1.42
NPC1L1-201ENST00000289547 H0YAA0 97 aa6.19□□□□□ -1.42
NPC1L1-201ENST00000289547 VWFP04275 2813 aa6.19□□□□□ -1.42
NPC1L1-201ENST00000289547 PLAC4Q8WY50 150 aa6.17□□□□□ -1.42
NPC1L1-201ENST00000289547 TPRXLQ17RH7 258 aa6.16□□□□□ -1.42
NPC1L1-201ENST00000289547 FBN3Q75N90 2809 aa6.14□□□□□ -1.43
NPC1L1-201ENST00000289547 KRTAP10-8P60410 259 aa6.11□□□□□ -1.43
NPC1L1-201ENST00000289547 TGP01266 2768 aa6.07□□□□□ -1.44
NPC1L1-201ENST00000289547 XP32Q5T750 250 aa6.07□□□□□ -1.44
NPC1L1-201ENST00000289547 PKD1L1Q8TDX9 2849 aa6.07□□□□□ -1.44
NPC1L1-201ENST00000289547 CSMD2Q7Z408 3487 aa6.06□□□□□ -1.44
NPC1L1-201ENST00000289547 P0C880 135 aa6.03□□□□□ -1.44
NPC1L1-201ENST00000289547 AKAP9Q99996 3911 aa6.01□□□□□ -1.45
NPC1L1-201ENST00000289547 KRTAP13-3Q3SY46 172 aa5.99□□□□□ -1.45
NPC1L1-201ENST00000289547 TRRAPQ9Y4A5 3859 aa5.96□□□□□ -1.46
NPC1L1-201ENST00000289547 ALMS1Q8TCU4 4167 aa5.93□□□□□ -1.46
NPC1L1-201ENST00000289547 HUWE1Q7Z6Z7 4374 aaKnown RBP5.91□□□□□ -1.46
NPC1L1-201ENST00000289547 SRRM2Q9UQ35 2752 aaKnown RBP5.9□□□□□ -1.46
NPC1L1-201ENST00000289547 TNP1P09430 55 aa5.88□□□□□ -1.47
NPC1L1-201ENST00000289547 PP632Q6XCG6 107 aa5.86□□□□□ -1.47
NPC1L1-201ENST00000289547 VPS13CQ709C8 3753 aa5.84□□□□□ -1.47
NPC1L1-201ENST00000289547 DNAH9Q9NYC9 4486 aa5.79□□□□□ -1.48
NPC1L1-201ENST00000289547 ZNF469Q96JG9 3925 aaPredicted RBP5.79□□□□□ -1.48
NPC1L1-201ENST00000289547 MT1HL1P0DM35 61 aa5.77□□□□□ -1.49
NPC1L1-201ENST00000289547 KRTAP4-5Q9BYR2 181 aa5.75□□□□□ -1.49
NPC1L1-201ENST00000289547 MEGF8Q7Z7M0 2845 aa5.75□□□□□ -1.49
NPC1L1-201ENST00000289547 KRTAP10-4P60372 401 aaPredicted RBP5.72□□□□□ -1.49
NPC1L1-201ENST00000289547 KRTAP12-2P59991 146 aa5.7□□□□□ -1.5
NPC1L1-201ENST00000289547 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
NPC1L1-201ENST00000289547 DNHD1Q96M86 4753 aa5.68□□□□□ -1.5
NPC1L1-201ENST00000289547 COL7A1Q02388 2944 aa5.64□□□□□ -1.51
NPC1L1-201ENST00000289547 ANK2Q01484 3957 aa5.63□□□□□ -1.51
NPC1L1-201ENST00000289547 KRTAP3-1Q9BYR8 98 aa5.61□□□□□ -1.51
NPC1L1-201ENST00000289547 KRTAP12-1P59990 96 aa5.6□□□□□ -1.51
NPC1L1-201ENST00000289547 KRTAP13-4Q3LI77 160 aa5.55□□□□□ -1.52
NPC1L1-201ENST00000289547 KRTAP15-1Q3LI76 137 aa5.54□□□□□ -1.52
NPC1L1-201ENST00000289547 DNAH1Q9P2D7 4330 aa5.52□□□□□ -1.53
NPC1L1-201ENST00000289547 DNAH11Q96DT5 4516 aa5.52□□□□□ -1.53
NPC1L1-201ENST00000289547 PLECQ15149 4684 aaKnown RBP5.51□□□□□ -1.53
NPC1L1-201ENST00000289547 PRO2289Q9P1D8 64 aa5.51□□□□□ -1.53
NPC1L1-201ENST00000289547 KRTAP10-6P60371 365 aaPredicted RBP5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms