RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 WDFY4Q6ZS81 3184 aa4.72□□□□□ -1.65
LIMD1-201ENST00000273317 COL12A1Q99715 3063 aa4.72□□□□□ -1.65
LIMD1-201ENST00000273317 KRTAP4-16G5E9R7 235 aaPredicted RBP4.72□□□□□ -1.65
LIMD1-201ENST00000273317 RPS29P62273 56 aaKnown RBP4.71□□□□□ -1.66
LIMD1-201ENST00000273317 Q5VSD8 79 aa4.71□□□□□ -1.66
LIMD1-201ENST00000273317 ADM2Q7Z4H4 148 aa4.7□□□□□ -1.66
LIMD1-201ENST00000273317 KRTAP1-5Q9BYS1 174 aa4.7□□□□□ -1.66
LIMD1-201ENST00000273317 ZZEF1O43149 2961 aa4.69□□□□□ -1.66
LIMD1-201ENST00000273317 TNRC18O15417 2968 aaPredicted RBP4.69□□□□□ -1.66
LIMD1-201ENST00000273317 C20orf166-AS1Q96NR2 134 aa4.69□□□□□ -1.66
LIMD1-201ENST00000273317 NBEAQ8NFP9 2946 aa4.68□□□□□ -1.66
LIMD1-201ENST00000273317 DMDP11532 3685 aa4.67□□□□□ -1.66
LIMD1-201ENST00000273317 A6NN06 94 aa4.66□□□□□ -1.66
LIMD1-201ENST00000273317 A0A087X002 238 aa4.66□□□□□ -1.66
LIMD1-201ENST00000273317 TGP01266 2768 aa4.65□□□□□ -1.66
LIMD1-201ENST00000273317 KRTAP10-1P60331 282 aa4.65□□□□□ -1.66
LIMD1-201ENST00000273317 LCE6AA0A183 80 aa4.65□□□□□ -1.66
LIMD1-201ENST00000273317 A8MU10 97 aa4.65□□□□□ -1.67
LIMD1-201ENST00000273317 COL6A3P12111 3177 aa4.65□□□□□ -1.67
LIMD1-201ENST00000273317 KRTAP25-1Q3LHN0 102 aa4.64□□□□□ -1.67
LIMD1-201ENST00000273317 BOD1L1Q8NFC6 3051 aa4.64□□□□□ -1.67
LIMD1-201ENST00000273317 ASPMQ8IZT6 3477 aa4.64□□□□□ -1.67
LIMD1-201ENST00000273317 LOC400499M0QZD8 3231 aa4.62□□□□□ -1.67
LIMD1-201ENST00000273317 DCHS2Q6V1P9 2916 aa4.62□□□□□ -1.67
LIMD1-201ENST00000273317 ZFHX4Q86UP3 3567 aa4.61□□□□□ -1.67
LIMD1-201ENST00000273317 ZANQ9Y493 2812 aa4.61□□□□□ -1.67
LIMD1-201ENST00000273317 DMXL1Q9Y485 3027 aa4.61□□□□□ -1.67
LIMD1-201ENST00000273317 C10orf95Q9H7T3 257 aa4.61□□□□□ -1.67
LIMD1-201ENST00000273317 SRRM2Q9UQ35 2752 aaKnown RBP4.6□□□□□ -1.67
LIMD1-201ENST00000273317 KRTAP10-2P60368 255 aa4.6□□□□□ -1.67
LIMD1-201ENST00000273317 ADGRG4Q8IZF6 3080 aa4.59□□□□□ -1.67
LIMD1-201ENST00000273317 DCHS1Q96JQ0 3298 aa4.58□□□□□ -1.68
LIMD1-201ENST00000273317 ATMQ13315 3056 aa4.55□□□□□ -1.68
LIMD1-201ENST00000273317 NOTCH2NLQ7Z3S9 236 aa4.54□□□□□ -1.68
LIMD1-201ENST00000273317 A8MUU9 505 aa4.54□□□□□ -1.68
LIMD1-201ENST00000273317 LAMA5O15230 3695 aa4.53□□□□□ -1.68
LIMD1-201ENST00000273317 CFAP47Q6ZTR5 3102 aa4.53□□□□□ -1.68
LIMD1-201ENST00000273317 KRTAP13-1Q8IUC0 172 aa4.49□□□□□ -1.69
LIMD1-201ENST00000273317 PP632Q6XCG6 107 aa4.48□□□□□ -1.69
LIMD1-201ENST00000273317 Q6ZRN7 208 aaPredicted RBP4.48□□□□□ -1.69
LIMD1-201ENST00000273317 VWFP04275 2813 aa4.46□□□□□ -1.7
LIMD1-201ENST00000273317 CELSR1Q9NYQ6 3014 aa4.45□□□□□ -1.7
LIMD1-201ENST00000273317 MXRA5Q9NR99 2828 aa4.45□□□□□ -1.7
LIMD1-201ENST00000273317 TNP1P09430 55 aa4.45□□□□□ -1.7
LIMD1-201ENST00000273317 KRTAP13-2Q52LG2 175 aa4.44□□□□□ -1.7
LIMD1-201ENST00000273317 KRTAP11-1Q8IUC1 163 aa4.43□□□□□ -1.7
LIMD1-201ENST00000273317 FBN2P35556 2912 aa4.42□□□□□ -1.7
LIMD1-201ENST00000273317 SMG1Q96Q15 3661 aaKnown RBP4.41□□□□□ -1.7
LIMD1-201ENST00000273317 KRTAP7-1Q8IUC3 87 aa4.4□□□□□ -1.7
LIMD1-201ENST00000273317 SPENQ96T58 3664 aaKnown RBP4.4□□□□□ -1.7
LIMD1-201ENST00000273317 RELNP78509 3460 aa4.39□□□□□ -1.71
LIMD1-201ENST00000273317 SVEP1Q4LDE5 3571 aa4.35□□□□□ -1.71
LIMD1-201ENST00000273317 PKD1L1Q8TDX9 2849 aa4.34□□□□□ -1.72
LIMD1-201ENST00000273317 TENM2Q9NT68 2774 aa4.33□□□□□ -1.72
LIMD1-201ENST00000273317 COL7A1Q02388 2944 aa4.33□□□□□ -1.72
LIMD1-201ENST00000273317 CSMD1Q96PZ7 3565 aa4.32□□□□□ -1.72
LIMD1-201ENST00000273317 TENM4Q6N022 2769 aa4.31□□□□□ -1.72
LIMD1-201ENST00000273317 P0C880 135 aa4.27□□□□□ -1.73
LIMD1-201ENST00000273317 HRNRQ86YZ3 2850 aaPredicted RBP4.26□□□□□ -1.73
LIMD1-201ENST00000273317 H0YAA0 97 aa4.26□□□□□ -1.73
LIMD1-201ENST00000273317 KRTAP10-8P60410 259 aa4.26□□□□□ -1.73
LIMD1-201ENST00000273317 A0A1B0GVY2 172 aa4.25□□□□□ -1.73
LIMD1-201ENST00000273317 CUBNO60494 3623 aa4.25□□□□□ -1.73
LIMD1-201ENST00000273317 NBPF19A0A087WUL8 3843 aa4.25□□□□□ -1.73
LIMD1-201ENST00000273317 KRTAP21-3Q3LHN1 58 aa4.25□□□□□ -1.73
LIMD1-201ENST00000273317 XP32Q5T750 250 aa4.23□□□□□ -1.73
LIMD1-201ENST00000273317 TPRXLQ17RH7 258 aa4.21□□□□□ -1.74
LIMD1-201ENST00000273317 PRO2289Q9P1D8 64 aa4.2□□□□□ -1.74
LIMD1-201ENST00000273317 KRTAP1-4P0C5Y4 121 aa4.19□□□□□ -1.74
LIMD1-201ENST00000273317 BSNQ9UPA5 3926 aa4.19□□□□□ -1.74
LIMD1-201ENST00000273317 CSMD2Q7Z408 3487 aa4.17□□□□□ -1.74
LIMD1-201ENST00000273317 ZFHX3Q15911 3703 aa4.17□□□□□ -1.74
LIMD1-201ENST00000273317 MEGF8Q7Z7M0 2845 aa4.14□□□□□ -1.75
LIMD1-201ENST00000273317 VPS13CQ709C8 3753 aa4.1□□□□□ -1.75
LIMD1-201ENST00000273317 KRTAP13-3Q3SY46 172 aa4.09□□□□□ -1.75
LIMD1-201ENST00000273317 AKAP9Q99996 3911 aa4.08□□□□□ -1.76
LIMD1-201ENST00000273317 OTOGQ6ZRI0 2925 aa4.07□□□□□ -1.76
LIMD1-201ENST00000273317 KRTAP10-10P60014 251 aa4.06□□□□□ -1.76
LIMD1-201ENST00000273317 FBN1P35555 2871 aaKnown RBP4.04□□□□□ -1.76
LIMD1-201ENST00000273317 KRTAP13-4Q3LI77 160 aa4.01□□□□□ -1.77
LIMD1-201ENST00000273317 KRTAP12-2P59991 146 aa3.96□□□□□ -1.78
LIMD1-201ENST00000273317 KRTAP12-1P59990 96 aa3.9□□□□□ -1.79
LIMD1-201ENST00000273317 FBN3Q75N90 2809 aa3.88□□□□□ -1.79
LIMD1-201ENST00000273317 CRCT1Q9UGL9 99 aa3.85□□□□□ -1.79
LIMD1-201ENST00000273317 INE1O15225 51 aa3.83□□□□□ -1.8
LIMD1-201ENST00000273317 ZNF469Q96JG9 3925 aaPredicted RBP3.83□□□□□ -1.8
LIMD1-201ENST00000273317 TRRAPQ9Y4A5 3859 aa3.83□□□□□ -1.8
LIMD1-201ENST00000273317 KRTAP15-1Q3LI76 137 aa3.82□□□□□ -1.8
LIMD1-201ENST00000273317 LYSTQ99698 3801 aa3.76□□□□□ -1.81
LIMD1-201ENST00000273317 KRTAP3-1Q9BYR8 98 aa3.75□□□□□ -1.81
LIMD1-201ENST00000273317 KRTAP10-6P60371 365 aaPredicted RBP3.72□□□□□ -1.81
LIMD1-201ENST00000273317 CSMD3Q7Z407 3707 aa3.72□□□□□ -1.81
LIMD1-201ENST00000273317 KRTAP23-1A1A580 65 aa3.67□□□□□ -1.82
LIMD1-201ENST00000273317 KRTAP10-12P60413 245 aa3.63□□□□□ -1.83
LIMD1-201ENST00000273317 KRTAP3-2Q9BYR7 98 aa3.57□□□□□ -1.84
LIMD1-201ENST00000273317 ALMS1Q8TCU4 4167 aa3.55□□□□□ -1.84
LIMD1-201ENST00000273317 CMYA5Q8N3K9 4069 aa3.55□□□□□ -1.84
LIMD1-201ENST00000273317 KRTAP3-3Q9BYR6 98 aa3.53□□□□□ -1.84
LIMD1-201ENST00000273317 KRTAP12-3P60328 96 aa3.51□□□□□ -1.85
LIMD1-201ENST00000273317 ANK2Q01484 3957 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 326.9 ms