RNA–Protein interactions for RNA: ENST00000272793.9

UBR3-201, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UBR3, Length 8,005 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-201ENST00000272793 KRTAP4-16G5E9R7 235 aaPredicted RBP9.01□□□□□ -0.97
UBR3-201ENST00000272793 ZZEF1O43149 2961 aa9□□□□□ -0.97
UBR3-201ENST00000272793 KRTAP1-3Q8IUG1 177 aa8.99□□□□□ -0.97
UBR3-201ENST00000272793 KRTAP10-2P60368 255 aa8.99□□□□□ -0.97
UBR3-201ENST00000272793 KRTAP1-5Q9BYS1 174 aa8.98□□□□□ -0.97
UBR3-201ENST00000272793 KRTAP11-1Q8IUC1 163 aa8.96□□□□□ -0.97
UBR3-201ENST00000272793 VCANP13611 3396 aa8.95□□□□□ -0.98
UBR3-201ENST00000272793 KRTAP29-1A8MX34 341 aaPredicted RBP8.94□□□□□ -0.98
UBR3-201ENST00000272793 WDFY3Q8IZQ1 3526 aa8.94□□□□□ -0.98
UBR3-201ENST00000272793 DMXL2Q8TDJ6 3036 aa8.93□□□□□ -0.98
UBR3-201ENST00000272793 KRTAP1-1Q07627 177 aa8.93□□□□□ -0.98
UBR3-201ENST00000272793 ZNF292O60281 2723 aa8.92□□□□□ -0.98
UBR3-201ENST00000272793 DMXL1Q9Y485 3027 aa8.92□□□□□ -0.98
UBR3-201ENST00000272793 MYO15AQ9UKN7 3530 aa8.9□□□□□ -0.98
UBR3-201ENST00000272793 SPTBN5Q9NRC6 3674 aaKnown RBP8.88□□□□□ -0.99
UBR3-201ENST00000272793 ADGRG4Q8IZF6 3080 aa8.87□□□□□ -0.99
UBR3-201ENST00000272793 USP34Q70CQ2 3546 aa8.86□□□□□ -0.99
UBR3-201ENST00000272793 ASPMQ8IZT6 3477 aa8.85□□□□□ -0.99
UBR3-201ENST00000272793 DCHS1Q96JQ0 3298 aa8.8□□□□□ -1
UBR3-201ENST00000272793 TNRC18O15417 2968 aaPredicted RBP8.79□□□□□ -1
UBR3-201ENST00000272793 LCE6AA0A183 80 aa8.78□□□□□ -1
UBR3-201ENST00000272793 ZFHX4Q86UP3 3567 aa8.78□□□□□ -1
UBR3-201ENST00000272793 A0A1B0GVY2 172 aa8.76□□□□□ -1.01
UBR3-201ENST00000272793 LOC400499M0QZD8 3231 aa8.75□□□□□ -1.01
UBR3-201ENST00000272793 PRO2289Q9P1D8 64 aa8.73□□□□□ -1.01
UBR3-201ENST00000272793 LAMA5O15230 3695 aa8.67□□□□□ -1.02
UBR3-201ENST00000272793 CELSR1Q9NYQ6 3014 aa8.66□□□□□ -1.02
UBR3-201ENST00000272793 TACC2O95359 2948 aa8.65□□□□□ -1.02
UBR3-201ENST00000272793 RPS29P62273 56 aaKnown RBP8.63□□□□□ -1.03
UBR3-201ENST00000272793 TENM3Q9P273 2699 aa8.57□□□□□ -1.04
UBR3-201ENST00000272793 RELNP78509 3460 aa8.56□□□□□ -1.04
UBR3-201ENST00000272793 KRTAP10-10P60014 251 aa8.55□□□□□ -1.04
UBR3-201ENST00000272793 SRRM2Q9UQ35 2752 aaKnown RBP8.54□□□□□ -1.04
UBR3-201ENST00000272793 Q6ZRN7 208 aaPredicted RBP8.53□□□□□ -1.04
UBR3-201ENST00000272793 HIVEP1P15822 2718 aa8.52□□□□□ -1.05
UBR3-201ENST00000272793 NBEAQ8NFP9 2946 aa8.51□□□□□ -1.05
UBR3-201ENST00000272793 TENM1Q9UKZ4 2725 aa8.51□□□□□ -1.05
UBR3-201ENST00000272793 EYSQ5T1H1 3165 aa8.5□□□□□ -1.05
UBR3-201ENST00000272793 H0YAA0 97 aa8.49□□□□□ -1.05
UBR3-201ENST00000272793 KRTAP13-2Q52LG2 175 aa8.45□□□□□ -1.06
UBR3-201ENST00000272793 KRTAP7-1Q8IUC3 87 aa8.4□□□□□ -1.07
UBR3-201ENST00000272793 NBPF19A0A087WUL8 3843 aa8.39□□□□□ -1.07
UBR3-201ENST00000272793 CSMD1Q96PZ7 3565 aa8.37□□□□□ -1.07
UBR3-201ENST00000272793 CELSR2Q9HCU4 2923 aa8.37□□□□□ -1.07
UBR3-201ENST00000272793 NF1P21359 2839 aa8.37□□□□□ -1.07
UBR3-201ENST00000272793 PDZD2O15018 2839 aa8.34□□□□□ -1.07
UBR3-201ENST00000272793 TGP01266 2768 aa8.34□□□□□ -1.07
UBR3-201ENST00000272793 NIPBLQ6KC79 2804 aaeCLIP8.33□□□□□ -1.08
UBR3-201ENST00000272793 DCHS2Q6V1P9 2916 aa8.33□□□□□ -1.08
UBR3-201ENST00000272793 SPENQ96T58 3664 aaKnown RBP8.32□□□□□ -1.08
UBR3-201ENST00000272793 KRTAP12-2P59991 146 aa8.31□□□□□ -1.08
UBR3-201ENST00000272793 SMG1Q96Q15 3661 aaKnown RBP8.26□□□□□ -1.09
UBR3-201ENST00000272793 DMDP11532 3685 aa8.23□□□□□ -1.09
UBR3-201ENST00000272793 KRTAP13-1Q8IUC0 172 aa8.23□□□□□ -1.09
UBR3-201ENST00000272793 XP32Q5T750 250 aa8.16□□□□□ -1.1
UBR3-201ENST00000272793 ZFHX3Q15911 3703 aa8.16□□□□□ -1.1
UBR3-201ENST00000272793 FLNCQ14315 2725 aa8.11□□□□□ -1.11
UBR3-201ENST00000272793 KRTAP15-1Q3LI76 137 aa8.09□□□□□ -1.11
UBR3-201ENST00000272793 ZANQ9Y493 2812 aa8.05□□□□□ -1.12
UBR3-201ENST00000272793 CUBNO60494 3623 aa7.99□□□□□ -1.13
UBR3-201ENST00000272793 TENM4Q6N022 2769 aa7.95□□□□□ -1.14
UBR3-201ENST00000272793 VWFP04275 2813 aa7.95□□□□□ -1.14
UBR3-201ENST00000272793 TPRXLQ17RH7 258 aa7.94□□□□□ -1.14
UBR3-201ENST00000272793 CRCT1Q9UGL9 99 aa7.94□□□□□ -1.14
UBR3-201ENST00000272793 KRTAP13-4Q3LI77 160 aa7.93□□□□□ -1.14
UBR3-201ENST00000272793 FBN2P35556 2912 aa7.92□□□□□ -1.14
UBR3-201ENST00000272793 OTOGQ6ZRI0 2925 aa7.91□□□□□ -1.14
UBR3-201ENST00000272793 TENM2Q9NT68 2774 aa7.91□□□□□ -1.14
UBR3-201ENST00000272793 INE1O15225 51 aa7.89□□□□□ -1.15
UBR3-201ENST00000272793 PKD1L1Q8TDX9 2849 aa7.84□□□□□ -1.15
UBR3-201ENST00000272793 HRNRQ86YZ3 2850 aaPredicted RBP7.82□□□□□ -1.16
UBR3-201ENST00000272793 KRTAP1-4P0C5Y4 121 aa7.81□□□□□ -1.16
UBR3-201ENST00000272793 MEGF8Q7Z7M0 2845 aa7.8□□□□□ -1.16
UBR3-201ENST00000272793 COL7A1Q02388 2944 aa7.78□□□□□ -1.16
UBR3-201ENST00000272793 MXRA5Q9NR99 2828 aa7.73□□□□□ -1.17
UBR3-201ENST00000272793 KRTAP12-1P59990 96 aa7.68□□□□□ -1.18
UBR3-201ENST00000272793 CSMD2Q7Z408 3487 aa7.67□□□□□ -1.18
UBR3-201ENST00000272793 KRTAP13-3Q3SY46 172 aa7.66□□□□□ -1.18
UBR3-201ENST00000272793 SVEP1Q4LDE5 3571 aa7.65□□□□□ -1.19
UBR3-201ENST00000272793 MUC3AQ02505 3323 aa7.62□□□□□ -1.19
UBR3-201ENST00000272793 VPS13CQ709C8 3753 aa7.61□□□□□ -1.19
UBR3-201ENST00000272793 CSMD3Q7Z407 3707 aa7.6□□□□□ -1.19
UBR3-201ENST00000272793 KRTAP10-6P60371 365 aaPredicted RBP7.44□□□□□ -1.22
UBR3-201ENST00000272793 AKAP9Q99996 3911 aa7.44□□□□□ -1.22
UBR3-201ENST00000272793 KRTAP10-12P60413 245 aa7.33□□□□□ -1.24
UBR3-201ENST00000272793 KRTAP10-5P60370 271 aa7.31□□□□□ -1.24
UBR3-201ENST00000272793 FBN1P35555 2871 aaKnown RBP7.3□□□□□ -1.24
UBR3-201ENST00000272793 KRTAP3-1Q9BYR8 98 aa7.23□□□□□ -1.25
UBR3-201ENST00000272793 TRRAPQ9Y4A5 3859 aa7.18□□□□□ -1.26
UBR3-201ENST00000272793 FBN3Q75N90 2809 aa7.17□□□□□ -1.26
UBR3-201ENST00000272793 KRTAP21-3Q3LHN1 58 aa7.13□□□□□ -1.27
UBR3-201ENST00000272793 KRTAP12-3P60328 96 aa7.06□□□□□ -1.28
UBR3-201ENST00000272793 KRTAP23-1A1A580 65 aa6.92□□□□□ -1.3
UBR3-201ENST00000272793 ALMS1Q8TCU4 4167 aa6.91□□□□□ -1.3
UBR3-201ENST00000272793 KRTAP10-7P60409 375 aaPredicted RBP6.9□□□□□ -1.3
UBR3-201ENST00000272793 BSNQ9UPA5 3926 aa6.9□□□□□ -1.3
UBR3-201ENST00000272793 LCE3AQ5TA76 89 aa6.9□□□□□ -1.31
UBR3-201ENST00000272793 FRAS1Q86XX4 4008 aa6.77□□□□□ -1.33
UBR3-201ENST00000272793 KRTAP8-1Q8IUC2 63 aa6.76□□□□□ -1.33
UBR3-201ENST00000272793 KRTAP3-2Q9BYR7 98 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms