RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 LINC00208Q96KT6 92 aa9.03□□□□□ -0.96
SF3B4-201ENST00000271628 PRO0628Q9UI54 55 aa9.03□□□□□ -0.96
SF3B4-201ENST00000271628 DYNC1H1Q14204 4646 aaKnown RBP9.02□□□□□ -0.97
SF3B4-201ENST00000271628 Q96NJ1 140 aa9.01□□□□□ -0.97
SF3B4-201ENST00000271628 H0Y9P7 68 aa9.01□□□□□ -0.97
SF3B4-201ENST00000271628 A0A087X002 238 aa9□□□□□ -0.97
SF3B4-201ENST00000271628 SPINK6Q6UWN8 80 aa8.99□□□□□ -0.97
SF3B4-201ENST00000271628 SPANXA2-OT1Q8N9U9 137 aa8.98□□□□□ -0.97
SF3B4-201ENST00000271628 MMP24-AS1A0A0U1RRL7 71 aa8.98□□□□□ -0.97
SF3B4-201ENST00000271628 KRTAP1-4P0C5Y4 121 aa8.98□□□□□ -0.97
SF3B4-201ENST00000271628 Q1T7F1 81 aa8.97□□□□□ -0.97
SF3B4-201ENST00000271628 KRTAP13-2Q52LG2 175 aa8.97□□□□□ -0.97
SF3B4-201ENST00000271628 PLA2G1BP04054 148 aaKnown RBP8.95□□□□□ -0.98
SF3B4-201ENST00000271628 CDK2AP2O75956 126 aa8.95□□□□□ -0.98
SF3B4-201ENST00000271628 ASB16-AS1Q495Z4 193 aa8.94□□□□□ -0.98
SF3B4-201ENST00000271628 PRR4Q16378 134 aa8.93□□□□□ -0.98
SF3B4-201ENST00000271628 SMR3BP02814 79 aaPredicted RBP8.93□□□□□ -0.98
SF3B4-201ENST00000271628 TP53AIP1Q9HCN2 124 aa8.93□□□□□ -0.98
SF3B4-201ENST00000271628 APOBP04114 4563 aaKnown RBP8.92□□□□□ -0.98
SF3B4-201ENST00000271628 A0A1B0GVX0 72 aa8.9□□□□□ -0.98
SF3B4-201ENST00000271628 BRK1Q8WUW1 75 aa8.9□□□□□ -0.99
SF3B4-201ENST00000271628 TYMSOSQ8TAI1 123 aa8.89□□□□□ -0.99
SF3B4-201ENST00000271628 C8orf17Q9NRJ1 99 aa8.88□□□□□ -0.99
SF3B4-201ENST00000271628 V9GYY9 64 aa8.88□□□□□ -0.99
SF3B4-201ENST00000271628 LIMD2Q9BT23 127 aa8.87□□□□□ -0.99
SF3B4-201ENST00000271628 IGHV6-1A0A0B4J1U7 121 aa8.87□□□□□ -0.99
SF3B4-201ENST00000271628 C4orf48Q5BLP8 95 aa8.87□□□□□ -0.99
SF3B4-201ENST00000271628 IGLV7-46A0A075B6I9 117 aa8.84□□□□□ -0.99
SF3B4-201ENST00000271628 SPINK1P00995 79 aa8.84□□□□□ -0.99
SF3B4-201ENST00000271628 KRTAP10-4P60372 401 aaPredicted RBP8.84□□□□□ -0.99
SF3B4-201ENST00000271628 FAT1Q14517 4588 aa8.81□□□□□ -1
SF3B4-201ENST00000271628 RYR3Q15413 4870 aa8.81□□□□□ -1
SF3B4-201ENST00000271628 MRPL34Q9BQ48 92 aaKnown RBP8.81□□□□□ -1
SF3B4-201ENST00000271628 C1orf195Q5TG92 126 aa8.8□□□□□ -1
SF3B4-201ENST00000271628 PRR26Q8N8Z3 221 aa8.8□□□□□ -1
SF3B4-201ENST00000271628 SPAG11AQ6PDA7 123 aa8.79□□□□□ -1
SF3B4-201ENST00000271628 C8orf87E5RJ46 101 aa8.79□□□□□ -1
SF3B4-201ENST00000271628 RPS29P62273 56 aaKnown RBP8.78□□□□□ -1
SF3B4-201ENST00000271628 FAM229AH3BQW9 127 aa8.77□□□□□ -1
SF3B4-201ENST00000271628 PSPHP1O15172 72 aa8.77□□□□□ -1
SF3B4-201ENST00000271628 NDUFS5O43920 106 aa8.77□□□□□ -1
SF3B4-201ENST00000271628 LINC00304Q8N9R0 145 aa8.77□□□□□ -1.01
SF3B4-201ENST00000271628 NOTCH2NLQ7Z3S9 236 aa8.75□□□□□ -1.01
SF3B4-201ENST00000271628 Q8N9P0 234 aaPredicted RBP8.74□□□□□ -1.01
SF3B4-201ENST00000271628 PCOTHQ58A44 107 aa8.74□□□□□ -1.01
SF3B4-201ENST00000271628 LINC00313P59037 77 aa8.73□□□□□ -1.01
SF3B4-201ENST00000271628 COA5Q86WW8 74 aa8.73□□□□□ -1.01
SF3B4-201ENST00000271628 A8MUN3 132 aa8.72□□□□□ -1.01
SF3B4-201ENST00000271628 Q5VV11 94 aa8.69□□□□□ -1.02
SF3B4-201ENST00000271628 LOC101927531A0A1B0GV80 90 aa8.68□□□□□ -1.02
SF3B4-201ENST00000271628 PKHD1L1Q86WI1 4243 aa8.67□□□□□ -1.02
SF3B4-201ENST00000271628 Q5VSD8 79 aa8.65□□□□□ -1.02
SF3B4-201ENST00000271628 HSPG2P98160 4391 aa8.65□□□□□ -1.03
SF3B4-201ENST00000271628 PRR15LQ9BU68 103 aa8.63□□□□□ -1.03
SF3B4-201ENST00000271628 RYR1P21817 5038 aa8.62□□□□□ -1.03
SF3B4-201ENST00000271628 KRTAP13-3Q3SY46 172 aa8.62□□□□□ -1.03
SF3B4-201ENST00000271628 CHKB-CPT1BH3BT56 60 aa8.61□□□□□ -1.03
SF3B4-201ENST00000271628 Q5W150 140 aa8.61□□□□□ -1.03
SF3B4-201ENST00000271628 Q75L30 129 aa8.6□□□□□ -1.03
SF3B4-201ENST00000271628 HRES1P13985 223 aa8.59□□□□□ -1.03
SF3B4-201ENST00000271628 KRTAP16-1A8MUX0 517 aa8.58□□□□□ -1.04
SF3B4-201ENST00000271628 LINC01558Q9Y6Z2 57 aa8.57□□□□□ -1.04
SF3B4-201ENST00000271628 KRTAP10-8P60410 259 aa8.53□□□□□ -1.04
SF3B4-201ENST00000271628 ACYP2P14621 99 aa8.51□□□□□ -1.05
SF3B4-201ENST00000271628 Q8N1X5 172 aa8.5□□□□□ -1.05
SF3B4-201ENST00000271628 A6NED7 52 aa8.5□□□□□ -1.05
SF3B4-201ENST00000271628 KIAA1109Q2LD37 5005 aa8.49□□□□□ -1.05
SF3B4-201ENST00000271628 TNXBP22105 4242 aa8.49□□□□□ -1.05
SF3B4-201ENST00000271628 EPPK1P58107 5090 aaKnown RBP8.48□□□□□ -1.05
SF3B4-201ENST00000271628 LRP1Q07954 4544 aaKnown RBP8.47□□□□□ -1.05
SF3B4-201ENST00000271628 A8MU10 97 aa8.46□□□□□ -1.05
SF3B4-201ENST00000271628 PMAIP1Q13794 54 aa8.45□□□□□ -1.06
SF3B4-201ENST00000271628 DMAC1Q96GE9 116 aa8.45□□□□□ -1.06
SF3B4-201ENST00000271628 LCA10Q71F78 164 aa8.45□□□□□ -1.06
SF3B4-201ENST00000271628 IGKV2-30P06310 120 aa8.44□□□□□ -1.06
SF3B4-201ENST00000271628 ATP11AUNQ6ZP68 121 aa8.44□□□□□ -1.06
SF3B4-201ENST00000271628 CDC42SE1Q9NRR8 79 aa8.44□□□□□ -1.06
SF3B4-201ENST00000271628 FAT3Q8TDW7 4589 aa8.44□□□□□ -1.06
SF3B4-201ENST00000271628 RETNLBQ9BQ08 111 aa8.43□□□□□ -1.06
SF3B4-201ENST00000271628 KRTAP17-1Q9BYP8 105 aa8.43□□□□□ -1.06
SF3B4-201ENST00000271628 FLG2Q5D862 2391 aaPredicted RBP8.42□□□□□ -1.06
SF3B4-201ENST00000271628 C9orf92A6NGG3 77 aa8.4□□□□□ -1.06
SF3B4-201ENST00000271628 C20orf166-AS1Q96NR2 134 aa8.39□□□□□ -1.07
SF3B4-201ENST00000271628 A8MUU9 505 aa8.38□□□□□ -1.07
SF3B4-201ENST00000271628 SPTSSBQ8NFR3 76 aa8.37□□□□□ -1.07
SF3B4-201ENST00000271628 SPINK7P58062 85 aa8.34□□□□□ -1.07
SF3B4-201ENST00000271628 IGKV2D-30A0A075B6S6 120 aa8.33□□□□□ -1.08
SF3B4-201ENST00000271628 MT1HL1P0DM35 61 aa8.33□□□□□ -1.08
SF3B4-201ENST00000271628 MYCBP2O75592 4640 aa8.31□□□□□ -1.08
SF3B4-201ENST00000271628 C7orf65Q6ZTY9 151 aa8.3□□□□□ -1.08
SF3B4-201ENST00000271628 A6NN06 94 aa8.27□□□□□ -1.09
SF3B4-201ENST00000271628 KTN1-AS1Q86SY8 53 aa8.26□□□□□ -1.09
SF3B4-201ENST00000271628 DMBT1Q9UGM3 2413 aaPredicted RBP8.26□□□□□ -1.09
SF3B4-201ENST00000271628 A0A1B0GU69 56 aa8.25□□□□□ -1.09
SF3B4-201ENST00000271628 SEC61GP60059 68 aa8.2□□□□□ -1.1
SF3B4-201ENST00000271628 KRTAP4-5Q9BYR2 181 aa8.18□□□□□ -1.1
SF3B4-201ENST00000271628 RPL37P61927 97 aaKnown RBP8.15□□□□□ -1.1
SF3B4-201ENST00000271628 XP32Q5T750 250 aa8.15□□□□□ -1.11
SF3B4-201ENST00000271628 SPATA8Q6RVD6 105 aa8.14□□□□□ -1.11
SF3B4-201ENST00000271628 UQCR11O14957 56 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms