RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 HSPG2P98160 4391 aa7.7□□□□□ -1.18
CPSF6-201ENST00000266679 hDV103S1A0JD37 113 aa7.7□□□□□ -1.18
CPSF6-201ENST00000266679 ABCA13Q86UQ4 5058 aa7.69□□□□□ -1.18
CPSF6-201ENST00000266679 TRAV22A0A0B4J277 110 aa7.69□□□□□ -1.18
CPSF6-201ENST00000266679 IGLV7-43P04211 117 aa7.69□□□□□ -1.18
CPSF6-201ENST00000266679 KRTAP10-2P60368 255 aa7.67□□□□□ -1.18
CPSF6-201ENST00000266679 APOBP04114 4563 aaKnown RBP7.67□□□□□ -1.18
CPSF6-201ENST00000266679 IGHV6-1A0A0B4J1U7 121 aa7.66□□□□□ -1.18
CPSF6-201ENST00000266679 C1orf64Q8NEQ6 169 aa7.66□□□□□ -1.18
CPSF6-201ENST00000266679 C8orf17Q9NRJ1 99 aa7.66□□□□□ -1.18
CPSF6-201ENST00000266679 MPLKIPQ8TAP9 179 aa7.66□□□□□ -1.18
CPSF6-201ENST00000266679 A0A1B0GVX0 72 aa7.64□□□□□ -1.19
CPSF6-201ENST00000266679 H3BPC8 53 aa7.64□□□□□ -1.19
CPSF6-201ENST00000266679 CDK2AP2O75956 126 aa7.64□□□□□ -1.19
CPSF6-201ENST00000266679 CIRBP-AS1Q8TBR5 109 aa7.64□□□□□ -1.19
CPSF6-201ENST00000266679 CYP4F30PQ9H0H9 118 aa7.63□□□□□ -1.19
CPSF6-201ENST00000266679 ASB16-AS1Q495Z4 193 aa7.62□□□□□ -1.19
CPSF6-201ENST00000266679 NDUFS5O43920 106 aa7.6□□□□□ -1.19
CPSF6-201ENST00000266679 SPINK6Q6UWN8 80 aa7.6□□□□□ -1.19
CPSF6-201ENST00000266679 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
CPSF6-201ENST00000266679 A0A087X002 238 aa7.59□□□□□ -1.19
CPSF6-201ENST00000266679 NOTCH2NLQ7Z3S9 236 aa7.59□□□□□ -1.19
CPSF6-201ENST00000266679 KRTAP10-1P60331 282 aa7.58□□□□□ -1.2
CPSF6-201ENST00000266679 TP53AIP1Q9HCN2 124 aa7.58□□□□□ -1.2
CPSF6-201ENST00000266679 SPANXA2-OT1Q8N9U9 137 aa7.56□□□□□ -1.2
CPSF6-201ENST00000266679 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
CPSF6-201ENST00000266679 PCOTHQ58A44 107 aa7.55□□□□□ -1.2
CPSF6-201ENST00000266679 Q6ZSA8 131 aa7.54□□□□□ -1.2
CPSF6-201ENST00000266679 SSBP3-AS1Q7Z2R9 100 aa7.54□□□□□ -1.2
CPSF6-201ENST00000266679 CD164Q04900 197 aa7.53□□□□□ -1.2
CPSF6-201ENST00000266679 FAT1Q14517 4588 aa7.52□□□□□ -1.21
CPSF6-201ENST00000266679 KRTAP13-2Q52LG2 175 aa7.51□□□□□ -1.21
CPSF6-201ENST00000266679 Q1T7F1 81 aa7.5□□□□□ -1.21
CPSF6-201ENST00000266679 IGLV7-46A0A075B6I9 117 aa7.48□□□□□ -1.21
CPSF6-201ENST00000266679 BRK1Q8WUW1 75 aa7.47□□□□□ -1.21
CPSF6-201ENST00000266679 PSPHP1O15172 72 aa7.45□□□□□ -1.22
CPSF6-201ENST00000266679 PRO0628Q9UI54 55 aa7.45□□□□□ -1.22
CPSF6-201ENST00000266679 C8orf87E5RJ46 101 aa7.44□□□□□ -1.22
CPSF6-201ENST00000266679 COA5Q86WW8 74 aa7.44□□□□□ -1.22
CPSF6-201ENST00000266679 Q5W150 140 aa7.44□□□□□ -1.22
CPSF6-201ENST00000266679 MYCBP2O75592 4640 aa7.43□□□□□ -1.22
CPSF6-201ENST00000266679 KRTAP1-4P0C5Y4 121 aa7.43□□□□□ -1.22
CPSF6-201ENST00000266679 Q8N1X5 172 aa7.43□□□□□ -1.22
CPSF6-201ENST00000266679 VPS13BQ7Z7G8 4022 aa7.42□□□□□ -1.22
CPSF6-201ENST00000266679 C1orf195Q5TG92 126 aa7.42□□□□□ -1.22
CPSF6-201ENST00000266679 HERC1Q15751 4861 aa7.42□□□□□ -1.22
CPSF6-201ENST00000266679 KRTAP13-3Q3SY46 172 aa7.4□□□□□ -1.22
CPSF6-201ENST00000266679 LOC101927531A0A1B0GV80 90 aa7.4□□□□□ -1.23
CPSF6-201ENST00000266679 LINC00313P59037 77 aa7.4□□□□□ -1.23
CPSF6-201ENST00000266679 V9GYY9 64 aa7.39□□□□□ -1.23
CPSF6-201ENST00000266679 A8MUN3 132 aa7.39□□□□□ -1.23
CPSF6-201ENST00000266679 Q8N9P0 234 aaPredicted RBP7.38□□□□□ -1.23
CPSF6-201ENST00000266679 RETNLBQ9BQ08 111 aa7.37□□□□□ -1.23
CPSF6-201ENST00000266679 SMR3BP02814 79 aaPredicted RBP7.37□□□□□ -1.23
CPSF6-201ENST00000266679 FLG2Q5D862 2391 aaPredicted RBP7.37□□□□□ -1.23
CPSF6-201ENST00000266679 LIMD2Q9BT23 127 aa7.36□□□□□ -1.23
CPSF6-201ENST00000266679 PLA2G1BP04054 148 aaKnown RBP7.36□□□□□ -1.23
CPSF6-201ENST00000266679 TYMSOSQ8TAI1 123 aa7.35□□□□□ -1.23
CPSF6-201ENST00000266679 DMBT1Q9UGM3 2413 aaPredicted RBP7.35□□□□□ -1.23
CPSF6-201ENST00000266679 Q5VSD8 79 aa7.34□□□□□ -1.23
CPSF6-201ENST00000266679 HRES1P13985 223 aa7.33□□□□□ -1.24
CPSF6-201ENST00000266679 PRR15LQ9BU68 103 aa7.33□□□□□ -1.24
CPSF6-201ENST00000266679 C4orf48Q5BLP8 95 aa7.33□□□□□ -1.24
CPSF6-201ENST00000266679 Q5VV11 94 aa7.33□□□□□ -1.24
CPSF6-201ENST00000266679 KRTAP16-1A8MUX0 517 aa7.32□□□□□ -1.24
CPSF6-201ENST00000266679 FAM229AH3BQW9 127 aa7.32□□□□□ -1.24
CPSF6-201ENST00000266679 SPAG11AQ6PDA7 123 aa7.28□□□□□ -1.24
CPSF6-201ENST00000266679 PRR26Q8N8Z3 221 aa7.28□□□□□ -1.24
CPSF6-201ENST00000266679 CHKB-CPT1BH3BT56 60 aa7.27□□□□□ -1.25
CPSF6-201ENST00000266679 SPINK1P00995 79 aa7.27□□□□□ -1.25
CPSF6-201ENST00000266679 IGKV2-30P06310 120 aa7.26□□□□□ -1.25
CPSF6-201ENST00000266679 LRP1Q07954 4544 aaKnown RBP7.25□□□□□ -1.25
CPSF6-201ENST00000266679 LINC00304Q8N9R0 145 aa7.24□□□□□ -1.25
CPSF6-201ENST00000266679 Q75L30 129 aa7.23□□□□□ -1.25
CPSF6-201ENST00000266679 LINC01558Q9Y6Z2 57 aa7.23□□□□□ -1.25
CPSF6-201ENST00000266679 ACYP2P14621 99 aa7.22□□□□□ -1.25
CPSF6-201ENST00000266679 A8MU10 97 aa7.21□□□□□ -1.25
CPSF6-201ENST00000266679 IGKV2D-30A0A075B6S6 120 aa7.21□□□□□ -1.26
CPSF6-201ENST00000266679 DMAC1Q96GE9 116 aa7.21□□□□□ -1.26
CPSF6-201ENST00000266679 FAT3Q8TDW7 4589 aa7.2□□□□□ -1.26
CPSF6-201ENST00000266679 PKHD1L1Q86WI1 4243 aa7.18□□□□□ -1.26
CPSF6-201ENST00000266679 A6NED7 52 aa7.18□□□□□ -1.26
CPSF6-201ENST00000266679 RPS29P62273 56 aaKnown RBP7.16□□□□□ -1.26
CPSF6-201ENST00000266679 KRTAP10-4P60372 401 aaPredicted RBP7.14□□□□□ -1.27
CPSF6-201ENST00000266679 J3QL48 77 aa7.12□□□□□ -1.27
CPSF6-201ENST00000266679 LCA10Q71F78 164 aa7.12□□□□□ -1.27
CPSF6-201ENST00000266679 C7orf65Q6ZTY9 151 aa7.11□□□□□ -1.27
CPSF6-201ENST00000266679 C9orf92A6NGG3 77 aa7.1□□□□□ -1.27
CPSF6-201ENST00000266679 SPINK7P58062 85 aa7.1□□□□□ -1.27
CPSF6-201ENST00000266679 SPTSSBQ8NFR3 76 aa7.07□□□□□ -1.28
CPSF6-201ENST00000266679 CDC42SE1Q9NRR8 79 aa7.07□□□□□ -1.28
CPSF6-201ENST00000266679 HMCN2Q8NDA2 5059 aa7.06□□□□□ -1.28
CPSF6-201ENST00000266679 PMAIP1Q13794 54 aa7.03□□□□□ -1.28
CPSF6-201ENST00000266679 A0A1B0GU69 56 aa7.01□□□□□ -1.29
CPSF6-201ENST00000266679 A8MUU9 505 aa7.01□□□□□ -1.29
CPSF6-201ENST00000266679 C20orf166-AS1Q96NR2 134 aa7.01□□□□□ -1.29
CPSF6-201ENST00000266679 ATP11AUNQ6ZP68 121 aa7□□□□□ -1.29
CPSF6-201ENST00000266679 TNXBP22105 4242 aa7□□□□□ -1.29
CPSF6-201ENST00000266679 UBR4Q5T4S7 5183 aa6.99□□□□□ -1.29
CPSF6-201ENST00000266679 MT1HL1P0DM35 61 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms