RNA–Protein interactions for RNA: ENST00000264012.8

CDH3-201, Transcript of cadherin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH3, Length 4,929 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-201ENST00000264012 HRNRQ86YZ3 2850 aaPredicted RBP8.23□□□□□ -1.09
CDH3-201ENST00000264012 A0A087X002 238 aa8.23□□□□□ -1.09
CDH3-201ENST00000264012 KRTAP7-1Q8IUC3 87 aa8.22□□□□□ -1.09
CDH3-201ENST00000264012 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.09
CDH3-201ENST00000264012 CSAG1Q6PB30 78 aa8.19□□□□□ -1.1
CDH3-201ENST00000264012 NF1P21359 2839 aa8.19□□□□□ -1.1
CDH3-201ENST00000264012 S4R3F8 94 aa8.17□□□□□ -1.1
CDH3-201ENST00000264012 FBN2P35556 2912 aa8.15□□□□□ -1.11
CDH3-201ENST00000264012 PRAC1Q96KF2 57 aa8.13□□□□□ -1.11
CDH3-201ENST00000264012 DMAC1Q96GE9 116 aa8.12□□□□□ -1.11
CDH3-201ENST00000264012 NOTCH2NLQ7Z3S9 236 aa8.12□□□□□ -1.11
CDH3-201ENST00000264012 WDFY3Q8IZQ1 3526 aa8.1□□□□□ -1.11
CDH3-201ENST00000264012 ASB16-AS1Q495Z4 193 aa8.08□□□□□ -1.12
CDH3-201ENST00000264012 H3BS24 57 aa8.08□□□□□ -1.12
CDH3-201ENST00000264012 KRTAP13-1Q8IUC0 172 aa8.07□□□□□ -1.12
CDH3-201ENST00000264012 KRTAP13-2Q52LG2 175 aa8.01□□□□□ -1.13
CDH3-201ENST00000264012 R4GN34 69 aa8□□□□□ -1.13
CDH3-201ENST00000264012 A0A0A0MQY5 61 aa7.99□□□□□ -1.13
CDH3-201ENST00000264012 RPS29P62273 56 aaKnown RBP7.98□□□□□ -1.13
CDH3-201ENST00000264012 MXRA5Q9NR99 2828 aa7.96□□□□□ -1.14
CDH3-201ENST00000264012 KRTAP21-3Q3LHN1 58 aa7.96□□□□□ -1.14
CDH3-201ENST00000264012 A6NN06 94 aa7.95□□□□□ -1.14
CDH3-201ENST00000264012 SPATA8Q6RVD6 105 aa7.94□□□□□ -1.14
CDH3-201ENST00000264012 H1FX-AS1Q4G0G2 97 aa7.91□□□□□ -1.14
CDH3-201ENST00000264012 RPL37P61927 97 aaKnown RBP7.91□□□□□ -1.14
CDH3-201ENST00000264012 DMDP11532 3685 aa7.9□□□□□ -1.14
CDH3-201ENST00000264012 TENM3Q9P273 2699 aa7.9□□□□□ -1.15
CDH3-201ENST00000264012 ASPMQ8IZT6 3477 aa7.87□□□□□ -1.15
CDH3-201ENST00000264012 RELNP78509 3460 aa7.86□□□□□ -1.15
CDH3-201ENST00000264012 M0QZ58 72 aa7.86□□□□□ -1.15
CDH3-201ENST00000264012 DCHS1Q96JQ0 3298 aa7.86□□□□□ -1.15
CDH3-201ENST00000264012 TENM1Q9UKZ4 2725 aa7.84□□□□□ -1.15
CDH3-201ENST00000264012 ADM2Q7Z4H4 148 aa7.83□□□□□ -1.16
CDH3-201ENST00000264012 PLAC4Q8WY50 150 aa7.82□□□□□ -1.16
CDH3-201ENST00000264012 CELSR1Q9NYQ6 3014 aa7.82□□□□□ -1.16
CDH3-201ENST00000264012 ZFHX4Q86UP3 3567 aa7.81□□□□□ -1.16
CDH3-201ENST00000264012 ROMO1P60602 79 aa7.81□□□□□ -1.16
CDH3-201ENST00000264012 MUC3AQ02505 3323 aa7.77□□□□□ -1.17
CDH3-201ENST00000264012 A8MU10 97 aa7.77□□□□□ -1.17
CDH3-201ENST00000264012 TENM2Q9NT68 2774 aa7.71□□□□□ -1.17
CDH3-201ENST00000264012 PKD1L1Q8TDX9 2849 aa7.7□□□□□ -1.18
CDH3-201ENST00000264012 KRTAP1-4P0C5Y4 121 aa7.69□□□□□ -1.18
CDH3-201ENST00000264012 LAMA5O15230 3695 aa7.69□□□□□ -1.18
CDH3-201ENST00000264012 A8MUU9 505 aa7.68□□□□□ -1.18
CDH3-201ENST00000264012 KRTAP25-1Q3LHN0 102 aa7.66□□□□□ -1.18
CDH3-201ENST00000264012 C20orf166-AS1Q96NR2 134 aa7.65□□□□□ -1.18
CDH3-201ENST00000264012 PDZD2O15018 2839 aa7.63□□□□□ -1.19
CDH3-201ENST00000264012 SMG1Q96Q15 3661 aaKnown RBP7.63□□□□□ -1.19
CDH3-201ENST00000264012 KRTAP16-1A8MUX0 517 aa7.59□□□□□ -1.19
CDH3-201ENST00000264012 TGP01266 2768 aa7.56□□□□□ -1.2
CDH3-201ENST00000264012 FBN1P35555 2871 aaKnown RBP7.56□□□□□ -1.2
CDH3-201ENST00000264012 CSMD1Q96PZ7 3565 aa7.54□□□□□ -1.2
CDH3-201ENST00000264012 VWFP04275 2813 aa7.54□□□□□ -1.2
CDH3-201ENST00000264012 OTOGQ6ZRI0 2925 aa7.51□□□□□ -1.21
CDH3-201ENST00000264012 XP32Q5T750 250 aa7.5□□□□□ -1.21
CDH3-201ENST00000264012 SVEP1Q4LDE5 3571 aa7.42□□□□□ -1.22
CDH3-201ENST00000264012 NBPF19A0A087WUL8 3843 aa7.41□□□□□ -1.22
CDH3-201ENST00000264012 SPENQ96T58 3664 aaKnown RBP7.4□□□□□ -1.22
CDH3-201ENST00000264012 NDUFAF8A1L188 74 aa7.37□□□□□ -1.23
CDH3-201ENST00000264012 ZFHX3Q15911 3703 aa7.35□□□□□ -1.23
CDH3-201ENST00000264012 TPRXLQ17RH7 258 aa7.35□□□□□ -1.23
CDH3-201ENST00000264012 A0A1B0GVY2 172 aa7.3□□□□□ -1.24
CDH3-201ENST00000264012 KRTAP13-3Q3SY46 172 aa7.3□□□□□ -1.24
CDH3-201ENST00000264012 SRRM2Q9UQ35 2752 aaKnown RBP7.26□□□□□ -1.25
CDH3-201ENST00000264012 H0YAA0 97 aa7.25□□□□□ -1.25
CDH3-201ENST00000264012 TNP1P09430 55 aa7.24□□□□□ -1.25
CDH3-201ENST00000264012 KRTAP10-8P60410 259 aa7.24□□□□□ -1.25
CDH3-201ENST00000264012 CUBNO60494 3623 aa7.19□□□□□ -1.26
CDH3-201ENST00000264012 CSMD2Q7Z408 3487 aa7.17□□□□□ -1.26
CDH3-201ENST00000264012 ANK3Q12955 4377 aaKnown RBP7.15□□□□□ -1.27
CDH3-201ENST00000264012 FBN3Q75N90 2809 aa7.15□□□□□ -1.27
CDH3-201ENST00000264012 P0C880 135 aa7.12□□□□□ -1.27
CDH3-201ENST00000264012 C10orf95Q9H7T3 257 aa7.09□□□□□ -1.27
CDH3-201ENST00000264012 BSNQ9UPA5 3926 aa7.08□□□□□ -1.28
CDH3-201ENST00000264012 KRTAP10-10P60014 251 aa7.07□□□□□ -1.28
CDH3-201ENST00000264012 TRRAPQ9Y4A5 3859 aa7.05□□□□□ -1.28
CDH3-201ENST00000264012 PP632Q6XCG6 107 aa7.04□□□□□ -1.28
CDH3-201ENST00000264012 MEGF8Q7Z7M0 2845 aa7.01□□□□□ -1.29
CDH3-201ENST00000264012 PRO2289Q9P1D8 64 aa6.99□□□□□ -1.29
CDH3-201ENST00000264012 COL7A1Q02388 2944 aa6.97□□□□□ -1.29
CDH3-201ENST00000264012 VPS13CQ709C8 3753 aa6.93□□□□□ -1.3
CDH3-201ENST00000264012 KRTAP3-1Q9BYR8 98 aa6.88□□□□□ -1.31
CDH3-201ENST00000264012 KRTAP12-2P59991 146 aa6.8□□□□□ -1.32
CDH3-201ENST00000264012 KRTAP12-1P59990 96 aa6.71□□□□□ -1.33
CDH3-201ENST00000264012 MT1HL1P0DM35 61 aa6.71□□□□□ -1.34
CDH3-201ENST00000264012 HUWE1Q7Z6Z7 4374 aaKnown RBP6.67□□□□□ -1.34
CDH3-201ENST00000264012 KRTAP10-6P60371 365 aaPredicted RBP6.64□□□□□ -1.35
CDH3-201ENST00000264012 KRTAP13-4Q3LI77 160 aa6.63□□□□□ -1.35
CDH3-201ENST00000264012 KRTAP10-4P60372 401 aaPredicted RBP6.62□□□□□ -1.35
CDH3-201ENST00000264012 KRTAP4-5Q9BYR2 181 aa6.51□□□□□ -1.37
CDH3-201ENST00000264012 ZNF469Q96JG9 3925 aaPredicted RBP6.48□□□□□ -1.37
CDH3-201ENST00000264012 KRTAP3-3Q9BYR6 98 aa6.46□□□□□ -1.38
CDH3-201ENST00000264012 AKAP9Q99996 3911 aa6.44□□□□□ -1.38
CDH3-201ENST00000264012 KRTAP3-2Q9BYR7 98 aa6.43□□□□□ -1.38
CDH3-201ENST00000264012 DNAH9Q9NYC9 4486 aa6.41□□□□□ -1.38
CDH3-201ENST00000264012 KRTAP15-1Q3LI76 137 aa6.38□□□□□ -1.39
CDH3-201ENST00000264012 CSMD3Q7Z407 3707 aa6.37□□□□□ -1.39
CDH3-201ENST00000264012 DNAH5Q8TE73 4624 aa6.33□□□□□ -1.4
CDH3-201ENST00000264012 ALMS1Q8TCU4 4167 aa6.33□□□□□ -1.4
CDH3-201ENST00000264012 DNHD1Q96M86 4753 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms