RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 A0A1B0GVX0 72 aa9.81□□□□□ -0.84
ZNF541-201ENST00000263351 H3BPC8 53 aa9.81□□□□□ -0.84
ZNF541-201ENST00000263351 Q5W150 140 aa9.79□□□□□ -0.84
ZNF541-201ENST00000263351 DNHD1Q96M86 4753 aa9.79□□□□□ -0.84
ZNF541-201ENST00000263351 IGLV5-52A0A0A0MRZ9 124 aa9.79□□□□□ -0.84
ZNF541-201ENST00000263351 LINC00483Q53H64 154 aa9.78□□□□□ -0.84
ZNF541-201ENST00000263351 DNAH5Q8TE73 4624 aa9.78□□□□□ -0.84
ZNF541-201ENST00000263351 LCA10Q71F78 164 aa9.77□□□□□ -0.84
ZNF541-201ENST00000263351 SPTSSBQ8NFR3 76 aa9.77□□□□□ -0.84
ZNF541-201ENST00000263351 RETNLBQ9BQ08 111 aa9.76□□□□□ -0.85
ZNF541-201ENST00000263351 V9GYY9 64 aa9.76□□□□□ -0.85
ZNF541-201ENST00000263351 CIRBP-AS1Q8TBR5 109 aa9.75□□□□□ -0.85
ZNF541-201ENST00000263351 Q6ZR54 194 aa9.75□□□□□ -0.85
ZNF541-201ENST00000263351 HRES1P13985 223 aa9.74□□□□□ -0.85
ZNF541-201ENST00000263351 MRPL34Q9BQ48 92 aaKnown RBP9.74□□□□□ -0.85
ZNF541-201ENST00000263351 CDK2AP2O75956 126 aa9.73□□□□□ -0.85
ZNF541-201ENST00000263351 LRP1BQ9NZR2 4599 aa9.73□□□□□ -0.85
ZNF541-201ENST00000263351 A6NED7 52 aa9.72□□□□□ -0.85
ZNF541-201ENST00000263351 ZNF861PO60384 105 aa9.72□□□□□ -0.85
ZNF541-201ENST00000263351 NUPR2A6NF83 97 aa9.72□□□□□ -0.85
ZNF541-201ENST00000263351 PMAIP1Q13794 54 aa9.72□□□□□ -0.85
ZNF541-201ENST00000263351 LIMD2Q9BT23 127 aa9.71□□□□□ -0.85
ZNF541-201ENST00000263351 PRR26Q8N8Z3 221 aa9.71□□□□□ -0.86
ZNF541-201ENST00000263351 TP53AIP1Q9HCN2 124 aa9.69□□□□□ -0.86
ZNF541-201ENST00000263351 HYDINQ4G0P3 5121 aa9.68□□□□□ -0.86
ZNF541-201ENST00000263351 SPINK7P58062 85 aa9.67□□□□□ -0.86
ZNF541-201ENST00000263351 PLAC8Q9NZF1 115 aa9.67□□□□□ -0.86
ZNF541-201ENST00000263351 Q75L30 129 aa9.65□□□□□ -0.87
ZNF541-201ENST00000263351 ZNF706Q9Y5V0 76 aaPredicted RBP9.65□□□□□ -0.87
ZNF541-201ENST00000263351 LOC101927531A0A1B0GV80 90 aa9.63□□□□□ -0.87
ZNF541-201ENST00000263351 SEC61GP60059 68 aa9.62□□□□□ -0.87
ZNF541-201ENST00000263351 IGLV7-43P04211 117 aa9.62□□□□□ -0.87
ZNF541-201ENST00000263351 FAT2Q9NYQ8 4349 aa9.61□□□□□ -0.87
ZNF541-201ENST00000263351 KRTAP13-3Q3SY46 172 aa9.61□□□□□ -0.87
ZNF541-201ENST00000263351 KRTAP10-2P60368 255 aa9.6□□□□□ -0.87
ZNF541-201ENST00000263351 VPS13BQ7Z7G8 4022 aa9.58□□□□□ -0.88
ZNF541-201ENST00000263351 LINC01558Q9Y6Z2 57 aa9.58□□□□□ -0.88
ZNF541-201ENST00000263351 LY6G6CO95867 125 aa9.57□□□□□ -0.88
ZNF541-201ENST00000263351 PKD1P98161 4303 aa9.54□□□□□ -0.88
ZNF541-201ENST00000263351 C1orf134Q5TEV5 83 aa9.53□□□□□ -0.88
ZNF541-201ENST00000263351 KRTAP13-2Q52LG2 175 aa9.52□□□□□ -0.89
ZNF541-201ENST00000263351 CDC42SE1Q9NRR8 79 aa9.5□□□□□ -0.89
ZNF541-201ENST00000263351 A6NN06 94 aa9.48□□□□□ -0.89
ZNF541-201ENST00000263351 ATP11AUNQ6ZP68 121 aa9.47□□□□□ -0.89
ZNF541-201ENST00000263351 PKHD1P08F94 4074 aa9.47□□□□□ -0.89
ZNF541-201ENST00000263351 LINC00313P59037 77 aa9.46□□□□□ -0.9
ZNF541-201ENST00000263351 KTN1-AS1Q86SY8 53 aa9.43□□□□□ -0.9
ZNF541-201ENST00000263351 KRTAP10-1P60331 282 aa9.42□□□□□ -0.9
ZNF541-201ENST00000263351 IGKV2D-30A0A075B6S6 120 aa9.4□□□□□ -0.9
ZNF541-201ENST00000263351 IGKV2-30P06310 120 aa9.4□□□□□ -0.9
ZNF541-201ENST00000263351 ACYP2P14621 99 aa9.38□□□□□ -0.91
ZNF541-201ENST00000263351 SSBP3-AS1Q7Z2R9 100 aa9.38□□□□□ -0.91
ZNF541-201ENST00000263351 KRTAP16-1A8MUX0 517 aa9.37□□□□□ -0.91
ZNF541-201ENST00000263351 DMAC1Q96GE9 116 aa9.37□□□□□ -0.91
ZNF541-201ENST00000263351 RBM12B-AS1Q9P1G2 102 aa9.36□□□□□ -0.91
ZNF541-201ENST00000263351 C8orf87E5RJ46 101 aa9.34□□□□□ -0.91
ZNF541-201ENST00000263351 KRTAP1-4P0C5Y4 121 aa9.33□□□□□ -0.92
ZNF541-201ENST00000263351 ADM2Q7Z4H4 148 aa9.33□□□□□ -0.92
ZNF541-201ENST00000263351 PRAC1Q96KF2 57 aa9.32□□□□□ -0.92
ZNF541-201ENST00000263351 FAM229AH3BQW9 127 aa9.32□□□□□ -0.92
ZNF541-201ENST00000263351 FAT1Q14517 4588 aa9.29□□□□□ -0.92
ZNF541-201ENST00000263351 SPINK1P00995 79 aa9.28□□□□□ -0.92
ZNF541-201ENST00000263351 A0A1B0GU69 56 aa9.27□□□□□ -0.92
ZNF541-201ENST00000263351 Q8N1X5 172 aa9.26□□□□□ -0.93
ZNF541-201ENST00000263351 C7orf65Q6ZTY9 151 aa9.24□□□□□ -0.93
ZNF541-201ENST00000263351 PLA2G1BP04054 148 aaKnown RBP9.24□□□□□ -0.93
ZNF541-201ENST00000263351 Q6ZSA8 131 aa9.23□□□□□ -0.93
ZNF541-201ENST00000263351 TYMSOSQ8TAI1 123 aa9.18□□□□□ -0.94
ZNF541-201ENST00000263351 DYNC1H1Q14204 4646 aaKnown RBP9.16□□□□□ -0.94
ZNF541-201ENST00000263351 SMR3BP02814 79 aaPredicted RBP9.16□□□□□ -0.94
ZNF541-201ENST00000263351 SACSQ9NZJ4 4579 aa9.15□□□□□ -0.94
ZNF541-201ENST00000263351 C9orf92A6NGG3 77 aa9.14□□□□□ -0.95
ZNF541-201ENST00000263351 C4orf48Q5BLP8 95 aa9.13□□□□□ -0.95
ZNF541-201ENST00000263351 MIR22HGQ0VDD5 57 aa9.12□□□□□ -0.95
ZNF541-201ENST00000263351 SPATA8Q6RVD6 105 aa9.1□□□□□ -0.95
ZNF541-201ENST00000263351 UQCR11O14957 56 aa9.06□□□□□ -0.96
ZNF541-201ENST00000263351 LINC00304Q8N9R0 145 aa9.02□□□□□ -0.97
ZNF541-201ENST00000263351 APOBP04114 4563 aaKnown RBP9□□□□□ -0.97
ZNF541-201ENST00000263351 FLG2Q5D862 2391 aaPredicted RBP8.98□□□□□ -0.97
ZNF541-201ENST00000263351 LRP1Q07954 4544 aaKnown RBP8.97□□□□□ -0.97
ZNF541-201ENST00000263351 KRTAP3-1Q9BYR8 98 aa8.97□□□□□ -0.97
ZNF541-201ENST00000263351 PKHD1L1Q86WI1 4243 aa8.95□□□□□ -0.98
ZNF541-201ENST00000263351 MYCBP2O75592 4640 aa8.94□□□□□ -0.98
ZNF541-201ENST00000263351 H0YAA0 97 aa8.91□□□□□ -0.98
ZNF541-201ENST00000263351 CSAG1Q6PB30 78 aa8.91□□□□□ -0.98
ZNF541-201ENST00000263351 KMT2CQ8NEZ4 4911 aaKnown RBP8.88□□□□□ -0.99
ZNF541-201ENST00000263351 HSPG2P98160 4391 aa8.87□□□□□ -0.99
ZNF541-201ENST00000263351 DMBT1Q9UGM3 2413 aaPredicted RBP8.83□□□□□ -1
ZNF541-201ENST00000263351 A8MUU9 505 aa8.8□□□□□ -1
ZNF541-201ENST00000263351 KRTAP10-4P60372 401 aaPredicted RBP8.79□□□□□ -1
ZNF541-201ENST00000263351 LINC01554Q52M75 96 aa8.79□□□□□ -1
ZNF541-201ENST00000263351 C20orf166-AS1Q96NR2 134 aa8.79□□□□□ -1
ZNF541-201ENST00000263351 FAT3Q8TDW7 4589 aa8.77□□□□□ -1
ZNF541-201ENST00000263351 RYR2Q92736 4967 aa8.77□□□□□ -1.01
ZNF541-201ENST00000263351 CRIPTQ9P021 101 aa8.76□□□□□ -1.01
ZNF541-201ENST00000263351 A0A1B0GU33 70 aa8.73□□□□□ -1.01
ZNF541-201ENST00000263351 RPS29P62273 56 aaKnown RBP8.71□□□□□ -1.02
ZNF541-201ENST00000263351 TNXBP22105 4242 aa8.71□□□□□ -1.02
ZNF541-201ENST00000263351 H1FX-AS1Q4G0G2 97 aa8.68□□□□□ -1.02
ZNF541-201ENST00000263351 LPAP08519 4548 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms