RNA–Protein interactions for RNA: ENST00000261726.10

CUX2-201, Transcript of cut like homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CUX2, Length 6,844 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-201ENST00000261726 KRTAP16-1A8MUX0 517 aa8.27□□□□□ -1.08
CUX2-201ENST00000261726 A8MU10 97 aa8.26□□□□□ -1.09
CUX2-201ENST00000261726 FLNCQ14315 2725 aa8.25□□□□□ -1.09
CUX2-201ENST00000261726 NOTCH2NLQ7Z3S9 236 aa8.25□□□□□ -1.09
CUX2-201ENST00000261726 SVEP1Q4LDE5 3571 aa8.24□□□□□ -1.09
CUX2-201ENST00000261726 A8MUU9 505 aa8.23□□□□□ -1.09
CUX2-201ENST00000261726 ITPR1Q14643 2758 aa8.22□□□□□ -1.09
CUX2-201ENST00000261726 KRTAP29-1A8MX34 341 aaPredicted RBP8.21□□□□□ -1.09
CUX2-201ENST00000261726 DCHS2Q6V1P9 2916 aa8.2□□□□□ -1.1
CUX2-201ENST00000261726 TEP1Q99973 2627 aaKnown RBP8.2□□□□□ -1.1
CUX2-201ENST00000261726 SETXQ7Z333 2677 aaKnown RBP8.19□□□□□ -1.1
CUX2-201ENST00000261726 NBPF19A0A087WUL8 3843 aa8.19□□□□□ -1.1
CUX2-201ENST00000261726 ASB16-AS1Q495Z4 193 aa8.19□□□□□ -1.1
CUX2-201ENST00000261726 KRTAP4-16G5E9R7 235 aaPredicted RBP8.18□□□□□ -1.1
CUX2-201ENST00000261726 KRTAP25-1Q3LHN0 102 aa8.18□□□□□ -1.1
CUX2-201ENST00000261726 CHD6Q8TD26 2715 aa8.17□□□□□ -1.1
CUX2-201ENST00000261726 CELSR2Q9HCU4 2923 aa8.14□□□□□ -1.11
CUX2-201ENST00000261726 APCP25054 2843 aa8.12□□□□□ -1.11
CUX2-201ENST00000261726 DMBT1Q9UGM3 2413 aaPredicted RBP8.11□□□□□ -1.11
CUX2-201ENST00000261726 NDUFAF8A1L188 74 aa8.1□□□□□ -1.11
CUX2-201ENST00000261726 ASH1LQ9NR48 2969 aaKnown RBP8.09□□□□□ -1.11
CUX2-201ENST00000261726 STAB1Q9NY15 2570 aa8.09□□□□□ -1.11
CUX2-201ENST00000261726 KRTAP11-1Q8IUC1 163 aa8.09□□□□□ -1.12
CUX2-201ENST00000261726 UBR5O95071 2799 aaPredicted RBP8.08□□□□□ -1.12
CUX2-201ENST00000261726 CSMD2Q7Z408 3487 aa8.08□□□□□ -1.12
CUX2-201ENST00000261726 VPS13CQ709C8 3753 aa8.07□□□□□ -1.12
CUX2-201ENST00000261726 ZFHX3Q15911 3703 aa8.07□□□□□ -1.12
CUX2-201ENST00000261726 C10orf95Q9H7T3 257 aa8.07□□□□□ -1.12
CUX2-201ENST00000261726 NBEAL1Q6ZS30 2694 aa8.06□□□□□ -1.12
CUX2-201ENST00000261726 UNC79Q9P2D8 2635 aa8.06□□□□□ -1.12
CUX2-201ENST00000261726 CELSR1Q9NYQ6 3014 aa8.05□□□□□ -1.12
CUX2-201ENST00000261726 A6NN06 94 aa8.05□□□□□ -1.12
CUX2-201ENST00000261726 FBN2P35556 2912 aa8.04□□□□□ -1.12
CUX2-201ENST00000261726 ZANQ9Y493 2812 aa8.02□□□□□ -1.12
CUX2-201ENST00000261726 GCN1Q92616 2671 aaKnown RBP8.02□□□□□ -1.13
CUX2-201ENST00000261726 TNP1P09430 55 aa8.01□□□□□ -1.13
CUX2-201ENST00000261726 RPS29P62273 56 aaKnown RBP7.99□□□□□ -1.13
CUX2-201ENST00000261726 ITPR2Q14571 2701 aa7.96□□□□□ -1.13
CUX2-201ENST00000261726 KRTAP13-2Q52LG2 175 aa7.96□□□□□ -1.14
CUX2-201ENST00000261726 Q6ZRN7 208 aaPredicted RBP7.9□□□□□ -1.14
CUX2-201ENST00000261726 KRTAP7-1Q8IUC3 87 aa7.89□□□□□ -1.15
CUX2-201ENST00000261726 NBEAL2Q6ZNJ1 2754 aa7.87□□□□□ -1.15
CUX2-201ENST00000261726 STAB2Q8WWQ8 2551 aa7.87□□□□□ -1.15
CUX2-201ENST00000261726 HIVEP1P15822 2718 aa7.85□□□□□ -1.15
CUX2-201ENST00000261726 TENM4Q6N022 2769 aa7.85□□□□□ -1.15
CUX2-201ENST00000261726 ANK3Q12955 4377 aaKnown RBP7.85□□□□□ -1.15
CUX2-201ENST00000261726 KMT2BQ9UMN6 2715 aaPredicted RBP7.84□□□□□ -1.15
CUX2-201ENST00000261726 KRTAP10-8P60410 259 aa7.84□□□□□ -1.15
CUX2-201ENST00000261726 A0A1B0GVY2 172 aa7.83□□□□□ -1.16
CUX2-201ENST00000261726 PDZD2O15018 2839 aa7.81□□□□□ -1.16
CUX2-201ENST00000261726 COL6A5A8TX70 2615 aa7.81□□□□□ -1.16
CUX2-201ENST00000261726 MXRA5Q9NR99 2828 aa7.8□□□□□ -1.16
CUX2-201ENST00000261726 P0C880 135 aa7.79□□□□□ -1.16
CUX2-201ENST00000261726 KRTAP13-1Q8IUC0 172 aa7.79□□□□□ -1.16
CUX2-201ENST00000261726 ZNF469Q96JG9 3925 aaPredicted RBP7.76□□□□□ -1.17
CUX2-201ENST00000261726 NOTCH1P46531 2555 aa7.76□□□□□ -1.17
CUX2-201ENST00000261726 NF1P21359 2839 aa7.74□□□□□ -1.17
CUX2-201ENST00000261726 NSD1Q96L73 2696 aaPredicted RBP7.71□□□□□ -1.17
CUX2-201ENST00000261726 CUBNO60494 3623 aa7.69□□□□□ -1.18
CUX2-201ENST00000261726 AKAP9Q99996 3911 aa7.68□□□□□ -1.18
CUX2-201ENST00000261726 PP632Q6XCG6 107 aa7.65□□□□□ -1.18
CUX2-201ENST00000261726 XP32Q5T750 250 aa7.6□□□□□ -1.19
CUX2-201ENST00000261726 NIPBLQ6KC79 2804 aaeCLIP7.6□□□□□ -1.194e-7■■■■■ 50.1
CUX2-201ENST00000261726 KRTAP10-10P60014 251 aa7.57□□□□□ -1.2
CUX2-201ENST00000261726 OTOGQ6ZRI0 2925 aa7.56□□□□□ -1.2
CUX2-201ENST00000261726 H0YAA0 97 aa7.53□□□□□ -1.2
CUX2-201ENST00000261726 TRRAPQ9Y4A5 3859 aa7.51□□□□□ -1.21
CUX2-201ENST00000261726 PRO2289Q9P1D8 64 aa7.47□□□□□ -1.21
CUX2-201ENST00000261726 KRTAP1-4P0C5Y4 121 aa7.44□□□□□ -1.22
CUX2-201ENST00000261726 KRTAP21-3Q3LHN1 58 aa7.4□□□□□ -1.22
CUX2-201ENST00000261726 FBN1P35555 2871 aaKnown RBP7.38□□□□□ -1.23
CUX2-201ENST00000261726 TENM1Q9UKZ4 2725 aa7.38□□□□□ -1.23
CUX2-201ENST00000261726 TPRXLQ17RH7 258 aa7.37□□□□□ -1.23
CUX2-201ENST00000261726 VWFP04275 2813 aa7.3□□□□□ -1.24
CUX2-201ENST00000261726 HUWE1Q7Z6Z7 4374 aaKnown RBP7.24□□□□□ -1.25
CUX2-201ENST00000261726 KRTAP13-3Q3SY46 172 aa7.24□□□□□ -1.25
CUX2-201ENST00000261726 TENM3Q9P273 2699 aa7.22□□□□□ -1.25
CUX2-201ENST00000261726 KRTAP12-2P59991 146 aa7.14□□□□□ -1.27
CUX2-201ENST00000261726 CMYA5Q8N3K9 4069 aa7.09□□□□□ -1.27
CUX2-201ENST00000261726 PKD1L1Q8TDX9 2849 aa7.03□□□□□ -1.28
CUX2-201ENST00000261726 CRCT1Q9UGL9 99 aa7.02□□□□□ -1.29
CUX2-201ENST00000261726 KRTAP13-4Q3LI77 160 aa7□□□□□ -1.29
CUX2-201ENST00000261726 DNAH9Q9NYC9 4486 aa6.96□□□□□ -1.3
CUX2-201ENST00000261726 KRTAP15-1Q3LI76 137 aa6.94□□□□□ -1.3
CUX2-201ENST00000261726 TENM2Q9NT68 2774 aa6.92□□□□□ -1.3
CUX2-201ENST00000261726 KRTAP12-1P59990 96 aa6.91□□□□□ -1.3
CUX2-201ENST00000261726 ANK2Q01484 3957 aa6.91□□□□□ -1.3
CUX2-201ENST00000261726 CSMD3Q7Z407 3707 aa6.88□□□□□ -1.31
CUX2-201ENST00000261726 TGP01266 2768 aa6.82□□□□□ -1.32
CUX2-201ENST00000261726 DNAH3Q8TD57 4116 aa6.82□□□□□ -1.32
CUX2-201ENST00000261726 ALMS1Q8TCU4 4167 aa6.76□□□□□ -1.33
CUX2-201ENST00000261726 DNAH10Q8IVF4 4471 aa6.76□□□□□ -1.33
CUX2-201ENST00000261726 LYSTQ99698 3801 aa6.73□□□□□ -1.33
CUX2-201ENST00000261726 KRTAP3-1Q9BYR8 98 aa6.7□□□□□ -1.34
CUX2-201ENST00000261726 DNAH1Q9P2D7 4330 aa6.7□□□□□ -1.34
CUX2-201ENST00000261726 PLECQ15149 4684 aaKnown RBP6.68□□□□□ -1.34
CUX2-201ENST00000261726 PRKDCP78527 4128 aaKnown RBP6.66□□□□□ -1.34
CUX2-201ENST00000261726 KMT2AQ03164 3969 aa6.64□□□□□ -1.35
CUX2-201ENST00000261726 DNAH7Q8WXX0 4024 aa6.59□□□□□ -1.35
CUX2-201ENST00000261726 STARD9Q9P2P6 4700 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms