RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 MAP1BP46821 2468 aaKnown RBP1.18□□□□□ -2.22
CCDC54-201ENST00000261058 HECTD1Q9ULT8 2610 aa1.17□□□□□ -2.22
CCDC54-201ENST00000261058 LINC01556Q5JQF7 62 aa1.17□□□□□ -2.22
CCDC54-201ENST00000261058 TTC28Q96AY4 2481 aa1.17□□□□□ -2.22
CCDC54-201ENST00000261058 NBASA2RRP1 2371 aa1.16□□□□□ -2.22
CCDC54-201ENST00000261058 CREBBPQ92793 2442 aa1.16□□□□□ -2.22
CCDC54-201ENST00000261058 SETD2Q9BYW2 2564 aaPredicted RBP1.16□□□□□ -2.22
CCDC54-201ENST00000261058 C9orf92A6NGG3 77 aa1.15□□□□□ -2.23
CCDC54-201ENST00000261058 AKAP13Q12802 2813 aa1.14□□□□□ -2.23
CCDC54-201ENST00000261058 CRYBG3Q68DQ2 2970 aa1.14□□□□□ -2.23
CCDC54-201ENST00000261058 VPS13DQ5THJ4 4388 aa1.14□□□□□ -2.23
CCDC54-201ENST00000261058 M0R2T5 61 aa1.13□□□□□ -2.23
CCDC54-201ENST00000261058 TNRC18O15417 2968 aaPredicted RBP1.13□□□□□ -2.23
CCDC54-201ENST00000261058 POLQO75417 2590 aa1.12□□□□□ -2.23
CCDC54-201ENST00000261058 CELSR1Q9NYQ6 3014 aa1.12□□□□□ -2.23
CCDC54-201ENST00000261058 COL6A3P12111 3177 aa1.11□□□□□ -2.23
CCDC54-201ENST00000261058 DEFB133Q30KQ1 61 aa1.1□□□□□ -2.23
CCDC54-201ENST00000261058 ATRQ13535 2644 aa1.1□□□□□ -2.23
CCDC54-201ENST00000261058 KRTAP2-3P0C7H8 128 aa1.09□□□□□ -2.23
CCDC54-201ENST00000261058 RPS29P62273 56 aaKnown RBP1.09□□□□□ -2.23
CCDC54-201ENST00000261058 KRTAP2-4Q9BYR9 128 aa1.09□□□□□ -2.23
CCDC54-201ENST00000261058 KRTAP2-1Q9BYU5 128 aa1.09□□□□□ -2.23
CCDC54-201ENST00000261058 CHD9Q3L8U1 2897 aa1.09□□□□□ -2.23
CCDC54-201ENST00000261058 TENM4Q6N022 2769 aa1.09□□□□□ -2.24
CCDC54-201ENST00000261058 AHNAK2Q8IVF2 5795 aa1.08□□□□□ -2.24
CCDC54-201ENST00000261058 DNAH11Q96DT5 4516 aa1.08□□□□□ -2.24
CCDC54-201ENST00000261058 BDP1A6H8Y1 2624 aa1.08□□□□□ -2.24
CCDC54-201ENST00000261058 USP24Q9UPU5 2620 aa1.08□□□□□ -2.24
CCDC54-201ENST00000261058 CEP350Q5VT06 3117 aa1.08□□□□□ -2.24
CCDC54-201ENST00000261058 ITPR1Q14643 2758 aa1.07□□□□□ -2.24
CCDC54-201ENST00000261058 PTPN13Q12923 2485 aa1.07□□□□□ -2.24
CCDC54-201ENST00000261058 PIEZO1Q92508 2521 aa1.07□□□□□ -2.24
CCDC54-201ENST00000261058 ZFHX4Q86UP3 3567 aa1.07□□□□□ -2.24
CCDC54-201ENST00000261058 USP9YO00507 2555 aaPredicted RBP1.06□□□□□ -2.24
CCDC54-201ENST00000261058 EPG5Q9HCE0 2579 aa1.06□□□□□ -2.24
CCDC54-201ENST00000261058 ITPR3Q14573 2671 aa1.06□□□□□ -2.24
CCDC54-201ENST00000261058 LRRK2Q5S007 2527 aa1.06□□□□□ -2.24
CCDC54-201ENST00000261058 FAM186AA6NE01 2351 aa1.06□□□□□ -2.24
CCDC54-201ENST00000261058 MAP1AP78559 2803 aaPredicted RBP1.06□□□□□ -2.24
CCDC54-201ENST00000261058 NBEAQ8NFP9 2946 aa1.06□□□□□ -2.24
CCDC54-201ENST00000261058 HIVEP3Q5T1R4 2406 aa1.05□□□□□ -2.24
CCDC54-201ENST00000261058 ANKHD1Q8IWZ3 2542 aaKnown RBP1.05□□□□□ -2.24
CCDC54-201ENST00000261058 FRYLO94915 3013 aa1.05□□□□□ -2.24
CCDC54-201ENST00000261058 RIF1Q5UIP0 2472 aaKnown RBP1.05□□□□□ -2.24
CCDC54-201ENST00000261058 PRUNE2Q8WUY3 3088 aa1.05□□□□□ -2.24
CCDC54-201ENST00000261058 MYCBP2O75592 4640 aa1.05□□□□□ -2.24
CCDC54-201ENST00000261058 CSMD3Q7Z407 3707 aa1.04□□□□□ -2.24
CCDC54-201ENST00000261058 NBPF19A0A087WUL8 3843 aa1.04□□□□□ -2.24
CCDC54-201ENST00000261058 HTN3P15516 51 aa1.04□□□□□ -2.24
CCDC54-201ENST00000261058 NCOR2Q9Y618 2525 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 AKAP9Q99996 3911 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 NF1P21359 2839 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 FRYQ5TBA9 3013 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 KRTAP8-1Q8IUC2 63 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 SMR3AQ99954 134 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 CHD8Q9HCK8 2581 aa1.03□□□□□ -2.24
CCDC54-201ENST00000261058 RANBP2P49792 3224 aaKnown RBP1.03□□□□□ -2.25
CCDC54-201ENST00000261058 DCHS2Q6V1P9 2916 aa1.02□□□□□ -2.25
CCDC54-201ENST00000261058 PDZD2O15018 2839 aa1.02□□□□□ -2.25
CCDC54-201ENST00000261058 CACNA1AO00555 2505 aa1.02□□□□□ -2.25
CCDC54-201ENST00000261058 SONP18583 2426 aaKnown RBP1.02□□□□□ -2.25
CCDC54-201ENST00000261058 CFAP54Q96N23 3096 aa1.02□□□□□ -2.25
CCDC54-201ENST00000261058 SPG11Q96JI7 2443 aa1.02□□□□□ -2.25
CCDC54-201ENST00000261058 FLNCQ14315 2725 aa1.01□□□□□ -2.25
CCDC54-201ENST00000261058 SACSQ9NZJ4 4579 aa1.01□□□□□ -2.25
CCDC54-201ENST00000261058 LRBAP50851 2863 aa1.01□□□□□ -2.25
CCDC54-201ENST00000261058 COL7A1Q02388 2944 aa1□□□□□ -2.25
CCDC54-201ENST00000261058 SETXQ7Z333 2677 aaKnown RBP1□□□□□ -2.25
CCDC54-201ENST00000261058 APCP25054 2843 aa1□□□□□ -2.25
CCDC54-201ENST00000261058 ACANP16112 2415 aa1□□□□□ -2.25
CCDC54-201ENST00000261058 LYSTQ99698 3801 aa0.99□□□□□ -2.25
CCDC54-201ENST00000261058 GCN1Q92616 2671 aaKnown RBP0.99□□□□□ -2.25
CCDC54-201ENST00000261058 ANK2Q01484 3957 aa0.99□□□□□ -2.25
CCDC54-201ENST00000261058 MTORP42345 2549 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 DNAH8Q96JB1 4490 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 TRIOO75962 3097 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 COL12A1Q99715 3063 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 UTP20O75691 2785 aaKnown RBP0.98□□□□□ -2.25
CCDC54-201ENST00000261058 ZZEF1O43149 2961 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 C5orf42Q9H799 3197 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 NIPBLQ6KC79 2804 aaeCLIP0.98□□□□□ -2.25
CCDC54-201ENST00000261058 BOD1L1Q8NFC6 3051 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 U3KQA8 63 aa0.98□□□□□ -2.25
CCDC54-201ENST00000261058 CFAP46Q8IYW2 2715 aa0.97□□□□□ -2.25
CCDC54-201ENST00000261058 HTTP42858 3142 aa0.97□□□□□ -2.25
CCDC54-201ENST00000261058 RELNP78509 3460 aa0.97□□□□□ -2.25
CCDC54-201ENST00000261058 ATMQ13315 3056 aa0.97□□□□□ -2.25
CCDC54-201ENST00000261058 DEFB4AO15263 64 aa0.97□□□□□ -2.25
CCDC54-201ENST00000261058 DNAH12Q6ZR08 3092 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 KMT2AQ03164 3969 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 VPS13BQ7Z7G8 4022 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 SPENQ96T58 3664 aaKnown RBP0.96□□□□□ -2.26
CCDC54-201ENST00000261058 BSNQ9UPA5 3926 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 DMXL1Q9Y485 3027 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 FBN2P35556 2912 aa0.96□□□□□ -2.26
CCDC54-201ENST00000261058 DYNC2H1Q8NCM8 4307 aaKnown RBP0.95□□□□□ -2.26
CCDC54-201ENST00000261058 MKI67P46013 3256 aaKnown RBP0.95□□□□□ -2.26
CCDC54-201ENST00000261058 SZT2Q5T011 3432 aa0.95□□□□□ -2.26
CCDC54-201ENST00000261058 FRAS1Q86XX4 4008 aa0.95□□□□□ -2.26
CCDC54-201ENST00000261058 NSD1Q96L73 2696 aaPredicted RBP0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms