RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 hDV103S1A0JD37 113 aa11.05□□□□□ -0.64
PDLIM4-201ENST00000253754 LINC00208Q96KT6 92 aa11.05□□□□□ -0.64
PDLIM4-201ENST00000253754 A0A1B0GVY2 172 aa11.04□□□□□ -0.64
PDLIM4-201ENST00000253754 MP68P56378 58 aa11.04□□□□□ -0.64
PDLIM4-201ENST00000253754 IGHV6-1A0A0B4J1U7 121 aa11.03□□□□□ -0.64
PDLIM4-201ENST00000253754 H0Y9P7 68 aa11.03□□□□□ -0.64
PDLIM4-201ENST00000253754 PRR4Q16378 134 aa11.02□□□□□ -0.65
PDLIM4-201ENST00000253754 C8orf17Q9NRJ1 99 aa11.01□□□□□ -0.65
PDLIM4-201ENST00000253754 TRAV22A0A0B4J277 110 aa10.99□□□□□ -0.65
PDLIM4-201ENST00000253754 A0A1B0GVX0 72 aa10.99□□□□□ -0.65
PDLIM4-201ENST00000253754 A0A087X002 238 aa10.98□□□□□ -0.65
PDLIM4-201ENST00000253754 NOTCH2NLQ7Z3S9 236 aa10.98□□□□□ -0.65
PDLIM4-201ENST00000253754 PMAIP1Q13794 54 aa10.98□□□□□ -0.65
PDLIM4-201ENST00000253754 ASB16-AS1Q495Z4 193 aa10.98□□□□□ -0.65
PDLIM4-201ENST00000253754 SPINK6Q6UWN8 80 aa10.97□□□□□ -0.65
PDLIM4-201ENST00000253754 VPS13BQ7Z7G8 4022 aa10.96□□□□□ -0.65
PDLIM4-201ENST00000253754 CDK2AP2O75956 126 aa10.96□□□□□ -0.66
PDLIM4-201ENST00000253754 Q1T7F1 81 aa10.95□□□□□ -0.66
PDLIM4-201ENST00000253754 C1orf64Q8NEQ6 169 aa10.93□□□□□ -0.66
PDLIM4-201ENST00000253754 NDUFS5O43920 106 aa10.91□□□□□ -0.66
PDLIM4-201ENST00000253754 KRTAP13-2Q52LG2 175 aa10.91□□□□□ -0.66
PDLIM4-201ENST00000253754 APOBP04114 4563 aaKnown RBP10.9□□□□□ -0.66
PDLIM4-201ENST00000253754 H3BPC8 53 aa10.89□□□□□ -0.67
PDLIM4-201ENST00000253754 SSBP3-AS1Q7Z2R9 100 aa10.89□□□□□ -0.67
PDLIM4-201ENST00000253754 CD164Q04900 197 aa10.87□□□□□ -0.67
PDLIM4-201ENST00000253754 MRPL34Q9BQ48 92 aaKnown RBP10.87□□□□□ -0.67
PDLIM4-201ENST00000253754 FAT1Q14517 4588 aa10.86□□□□□ -0.67
PDLIM4-201ENST00000253754 CYP4F30PQ9H0H9 118 aa10.86□□□□□ -0.67
PDLIM4-201ENST00000253754 SMR3BP02814 79 aaPredicted RBP10.86□□□□□ -0.67
PDLIM4-201ENST00000253754 TP53AIP1Q9HCN2 124 aa10.85□□□□□ -0.67
PDLIM4-201ENST00000253754 KIAA1109Q2LD37 5005 aa10.84□□□□□ -0.67
PDLIM4-201ENST00000253754 KRTAP1-4P0C5Y4 121 aa10.82□□□□□ -0.68
PDLIM4-201ENST00000253754 PCOTHQ58A44 107 aa10.81□□□□□ -0.68
PDLIM4-201ENST00000253754 SPANXA2-OT1Q8N9U9 137 aa10.78□□□□□ -0.68
PDLIM4-201ENST00000253754 HSPG2P98160 4391 aa10.76□□□□□ -0.69
PDLIM4-201ENST00000253754 Q5W150 140 aa10.74□□□□□ -0.69
PDLIM4-201ENST00000253754 RYR1P21817 5038 aa10.71□□□□□ -0.69
PDLIM4-201ENST00000253754 PLA2G1BP04054 148 aaKnown RBP10.71□□□□□ -0.69
PDLIM4-201ENST00000253754 PSPHP1O15172 72 aa10.7□□□□□ -0.7
PDLIM4-201ENST00000253754 IGLV7-46A0A075B6I9 117 aa10.69□□□□□ -0.7
PDLIM4-201ENST00000253754 C8orf87E5RJ46 101 aa10.68□□□□□ -0.7
PDLIM4-201ENST00000253754 LINC00313P59037 77 aa10.67□□□□□ -0.7
PDLIM4-201ENST00000253754 KRTAP13-3Q3SY46 172 aa10.67□□□□□ -0.7
PDLIM4-201ENST00000253754 KRTAP10-4P60372 401 aaPredicted RBP10.65□□□□□ -0.7
PDLIM4-201ENST00000253754 TYMSOSQ8TAI1 123 aa10.65□□□□□ -0.7
PDLIM4-201ENST00000253754 KRTAP17-1Q9BYP8 105 aa10.63□□□□□ -0.71
PDLIM4-201ENST00000253754 A8MUN3 132 aa10.63□□□□□ -0.71
PDLIM4-201ENST00000253754 Q5VV11 94 aa10.63□□□□□ -0.71
PDLIM4-201ENST00000253754 RETNLBQ9BQ08 111 aa10.62□□□□□ -0.71
PDLIM4-201ENST00000253754 LIMD2Q9BT23 127 aa10.61□□□□□ -0.71
PDLIM4-201ENST00000253754 KTN1-AS1Q86SY8 53 aa10.61□□□□□ -0.71
PDLIM4-201ENST00000253754 COA5Q86WW8 74 aa10.61□□□□□ -0.71
PDLIM4-201ENST00000253754 Q8N9P0 234 aaPredicted RBP10.61□□□□□ -0.71
PDLIM4-201ENST00000253754 PRR26Q8N8Z3 221 aa10.6□□□□□ -0.71
PDLIM4-201ENST00000253754 C4orf48Q5BLP8 95 aa10.59□□□□□ -0.71
PDLIM4-201ENST00000253754 LOC101927531A0A1B0GV80 90 aa10.59□□□□□ -0.71
PDLIM4-201ENST00000253754 KRTAP16-1A8MUX0 517 aa10.57□□□□□ -0.72
PDLIM4-201ENST00000253754 FAM229AH3BQW9 127 aa10.57□□□□□ -0.72
PDLIM4-201ENST00000253754 A8MU10 97 aa10.56□□□□□ -0.72
PDLIM4-201ENST00000253754 SPINK1P00995 79 aa10.53□□□□□ -0.72
PDLIM4-201ENST00000253754 BIRC6Q9NR09 4857 aa10.53□□□□□ -0.72
PDLIM4-201ENST00000253754 RBM12B-AS1Q9P1G2 102 aa10.53□□□□□ -0.72
PDLIM4-201ENST00000253754 Q5VSD8 79 aa10.51□□□□□ -0.73
PDLIM4-201ENST00000253754 HRES1P13985 223 aa10.5□□□□□ -0.73
PDLIM4-201ENST00000253754 LINC00304Q8N9R0 145 aa10.5□□□□□ -0.73
PDLIM4-201ENST00000253754 MYCBP2O75592 4640 aa10.49□□□□□ -0.73
PDLIM4-201ENST00000253754 ATP11AUNQ6ZP68 121 aa10.49□□□□□ -0.73
PDLIM4-201ENST00000253754 FLG2Q5D862 2391 aaPredicted RBP10.49□□□□□ -0.73
PDLIM4-201ENST00000253754 CHKB-CPT1BH3BT56 60 aa10.47□□□□□ -0.73
PDLIM4-201ENST00000253754 LRP1Q07954 4544 aaKnown RBP10.47□□□□□ -0.73
PDLIM4-201ENST00000253754 Q75L30 129 aa10.45□□□□□ -0.74
PDLIM4-201ENST00000253754 A6NN06 94 aa10.45□□□□□ -0.74
PDLIM4-201ENST00000253754 IGKV2-30P06310 120 aa10.42□□□□□ -0.74
PDLIM4-201ENST00000253754 LCA10Q71F78 164 aa10.42□□□□□ -0.74
PDLIM4-201ENST00000253754 KRTAP4-5Q9BYR2 181 aa10.41□□□□□ -0.74
PDLIM4-201ENST00000253754 PKHD1L1Q86WI1 4243 aa10.41□□□□□ -0.74
PDLIM4-201ENST00000253754 PRR15LQ9BU68 103 aa10.41□□□□□ -0.74
PDLIM4-201ENST00000253754 ABCA13Q86UQ4 5058 aa10.4□□□□□ -0.74
PDLIM4-201ENST00000253754 SPAG11AQ6PDA7 123 aa10.4□□□□□ -0.75
PDLIM4-201ENST00000253754 IGKV2D-30A0A075B6S6 120 aa10.37□□□□□ -0.75
PDLIM4-201ENST00000253754 RPS29P62273 56 aaKnown RBP10.37□□□□□ -0.75
PDLIM4-201ENST00000253754 Q8N1X5 172 aa10.36□□□□□ -0.75
PDLIM4-201ENST00000253754 SPTSSBQ8NFR3 76 aa10.36□□□□□ -0.75
PDLIM4-201ENST00000253754 CDC42SE1Q9NRR8 79 aa10.35□□□□□ -0.75
PDLIM4-201ENST00000253754 HERC2O95714 4834 aa10.35□□□□□ -0.75
PDLIM4-201ENST00000253754 DMAC1Q96GE9 116 aa10.33□□□□□ -0.76
PDLIM4-201ENST00000253754 C7orf65Q6ZTY9 151 aa10.32□□□□□ -0.76
PDLIM4-201ENST00000253754 A6NED7 52 aa10.31□□□□□ -0.76
PDLIM4-201ENST00000253754 ACYP2P14621 99 aa10.31□□□□□ -0.76
PDLIM4-201ENST00000253754 C9orf92A6NGG3 77 aa10.3□□□□□ -0.76
PDLIM4-201ENST00000253754 LINC01558Q9Y6Z2 57 aa10.27□□□□□ -0.76
PDLIM4-201ENST00000253754 TNXBP22105 4242 aa10.26□□□□□ -0.77
PDLIM4-201ENST00000253754 PCLOQ9Y6V0 5065 aa10.25□□□□□ -0.77
PDLIM4-201ENST00000253754 FAT3Q8TDW7 4589 aa10.25□□□□□ -0.77
PDLIM4-201ENST00000253754 KRTAP10-8P60410 259 aa10.23□□□□□ -0.77
PDLIM4-201ENST00000253754 DMBT1Q9UGM3 2413 aaPredicted RBP10.2□□□□□ -0.78
PDLIM4-201ENST00000253754 C20orf166-AS1Q96NR2 134 aa10.14□□□□□ -0.79
PDLIM4-201ENST00000253754 A8MUU9 505 aa10.13□□□□□ -0.79
PDLIM4-201ENST00000253754 SPINK7P58062 85 aa10.11□□□□□ -0.79
PDLIM4-201ENST00000253754 MT1HL1P0DM35 61 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms