RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 KRTAP13-2Q52LG2 175 aa13.38□□□□□ -0.27
HOXD9-201ENST00000249499 Q5XG85 94 aa13.38□□□□□ -0.27
HOXD9-201ENST00000249499 H3BPC8 53 aa13.38□□□□□ -0.27
HOXD9-201ENST00000249499 TP53AIP1Q9HCN2 124 aa13.33□□□□□ -0.27
HOXD9-201ENST00000249499 IGHV6-1A0A0B4J1U7 121 aa13.33□□□□□ -0.28
HOXD9-201ENST00000249499 SPINK6Q6UWN8 80 aa13.32□□□□□ -0.28
HOXD9-201ENST00000249499 OXTP01178 125 aa13.29□□□□□ -0.28
HOXD9-201ENST00000249499 H0Y9P7 68 aa13.28□□□□□ -0.28
HOXD9-201ENST00000249499 KIAA1109Q2LD37 5005 aa13.28□□□□□ -0.28
HOXD9-201ENST00000249499 MRPL34Q9BQ48 92 aaKnown RBP13.27□□□□□ -0.29
HOXD9-201ENST00000249499 PLA2G1BP04054 148 aaKnown RBP13.25□□□□□ -0.29
HOXD9-201ENST00000249499 LIMD2Q9BT23 127 aa13.25□□□□□ -0.29
HOXD9-201ENST00000249499 TRAV22A0A0B4J277 110 aa13.25□□□□□ -0.29
HOXD9-201ENST00000249499 C8orf87E5RJ46 101 aa13.25□□□□□ -0.29
HOXD9-201ENST00000249499 LINC00208Q96KT6 92 aa13.25□□□□□ -0.29
HOXD9-201ENST00000249499 VPS13BQ7Z7G8 4022 aa13.21□□□□□ -0.29
HOXD9-201ENST00000249499 TYMSOSQ8TAI1 123 aa13.19□□□□□ -0.3
HOXD9-201ENST00000249499 C1orf195Q5TG92 126 aa13.18□□□□□ -0.3
HOXD9-201ENST00000249499 APOBP04114 4563 aaKnown RBP13.17□□□□□ -0.3
HOXD9-201ENST00000249499 C4orf48Q5BLP8 95 aa13.17□□□□□ -0.3
HOXD9-201ENST00000249499 NOTCH2NLQ7Z3S9 236 aa13.17□□□□□ -0.3
HOXD9-201ENST00000249499 SPINK1P00995 79 aa13.16□□□□□ -0.3
HOXD9-201ENST00000249499 C1orf64Q8NEQ6 169 aa13.16□□□□□ -0.3
HOXD9-201ENST00000249499 NDUFS5O43920 106 aa13.14□□□□□ -0.31
HOXD9-201ENST00000249499 RYR1P21817 5038 aa13.14□□□□□ -0.31
HOXD9-201ENST00000249499 SMIM26A0A096LP01 95 aa13.12□□□□□ -0.31
HOXD9-201ENST00000249499 RPS29P62273 56 aaKnown RBP13.12□□□□□ -0.31
HOXD9-201ENST00000249499 SPANXA2-OT1Q8N9U9 137 aa13.11□□□□□ -0.31
HOXD9-201ENST00000249499 CYP4F30PQ9H0H9 118 aa13.11□□□□□ -0.31
HOXD9-201ENST00000249499 SMR3BP02814 79 aaPredicted RBP13.1□□□□□ -0.31
HOXD9-201ENST00000249499 HSPG2P98160 4391 aa13.1□□□□□ -0.31
HOXD9-201ENST00000249499 SPAG11AQ6PDA7 123 aa13.09□□□□□ -0.31
HOXD9-201ENST00000249499 LINC00313P59037 77 aa13.08□□□□□ -0.32
HOXD9-201ENST00000249499 KRTAP10-4P60372 401 aaPredicted RBP13.08□□□□□ -0.32
HOXD9-201ENST00000249499 HERC2O95714 4834 aa13.05□□□□□ -0.32
HOXD9-201ENST00000249499 LINC00304Q8N9R0 145 aa13.04□□□□□ -0.32
HOXD9-201ENST00000249499 PRR26Q8N8Z3 221 aa13.04□□□□□ -0.32
HOXD9-201ENST00000249499 Q8N9P0 234 aaPredicted RBP13□□□□□ -0.33
HOXD9-201ENST00000249499 KRTAP13-3Q3SY46 172 aa12.97□□□□□ -0.33
HOXD9-201ENST00000249499 LOC101927531A0A1B0GV80 90 aa12.96□□□□□ -0.33
HOXD9-201ENST00000249499 FP248Q71RG6 208 aaPredicted RBP12.96□□□□□ -0.33
HOXD9-201ENST00000249499 KRTAP17-1Q9BYP8 105 aa12.96□□□□□ -0.33
HOXD9-201ENST00000249499 PRR4Q16378 134 aa12.95□□□□□ -0.34
HOXD9-201ENST00000249499 FAT1Q14517 4588 aa12.94□□□□□ -0.34
HOXD9-201ENST00000249499 IGLV7-46A0A075B6I9 117 aa12.93□□□□□ -0.34
HOXD9-201ENST00000249499 KRTAP16-1A8MUX0 517 aa12.93□□□□□ -0.34
HOXD9-201ENST00000249499 FAM229AH3BQW9 127 aa12.92□□□□□ -0.34
HOXD9-201ENST00000249499 C4orf26Q17RF5 130 aa12.91□□□□□ -0.34
HOXD9-201ENST00000249499 Q5W150 140 aa12.91□□□□□ -0.34
HOXD9-201ENST00000249499 PCOTHQ58A44 107 aa12.87□□□□□ -0.35
HOXD9-201ENST00000249499 ABCA13Q86UQ4 5058 aa12.82□□□□□ -0.36
HOXD9-201ENST00000249499 PCLOQ9Y6V0 5065 aa12.8□□□□□ -0.36
HOXD9-201ENST00000249499 KRTAP4-5Q9BYR2 181 aa12.78□□□□□ -0.36
HOXD9-201ENST00000249499 SVIPQ8NHG7 77 aa12.78□□□□□ -0.36
HOXD9-201ENST00000249499 PKHD1L1Q86WI1 4243 aa12.77□□□□□ -0.36
HOXD9-201ENST00000249499 MPLKIPQ8TAP9 179 aa12.77□□□□□ -0.37
HOXD9-201ENST00000249499 Q1T7F1 81 aa12.74□□□□□ -0.37
HOXD9-201ENST00000249499 Q8N1X5 172 aa12.74□□□□□ -0.37
HOXD9-201ENST00000249499 IGKV2-30P06310 120 aa12.72□□□□□ -0.37
HOXD9-201ENST00000249499 COA5Q86WW8 74 aa12.7□□□□□ -0.38
HOXD9-201ENST00000249499 Q5VSD8 79 aa12.69□□□□□ -0.38
HOXD9-201ENST00000249499 V9GYY9 64 aa12.69□□□□□ -0.38
HOXD9-201ENST00000249499 RETNLBQ9BQ08 111 aa12.63□□□□□ -0.39
HOXD9-201ENST00000249499 KRTAP10-8P60410 259 aa12.61□□□□□ -0.39
HOXD9-201ENST00000249499 HRES1P13985 223 aa12.6□□□□□ -0.39
HOXD9-201ENST00000249499 C20orf166-AS1Q96NR2 134 aa12.58□□□□□ -0.4
HOXD9-201ENST00000249499 A8MUU9 505 aa12.57□□□□□ -0.4
HOXD9-201ENST00000249499 DMAC1Q96GE9 116 aa12.55□□□□□ -0.4
HOXD9-201ENST00000249499 FLG2Q5D862 2391 aaPredicted RBP12.54□□□□□ -0.4
HOXD9-201ENST00000249499 ACYP2P14621 99 aa12.53□□□□□ -0.4
HOXD9-201ENST00000249499 MYCBP2O75592 4640 aa12.53□□□□□ -0.4
HOXD9-201ENST00000249499 IGKV2D-30A0A075B6S6 120 aa12.51□□□□□ -0.41
HOXD9-201ENST00000249499 C9orf92A6NGG3 77 aa12.49□□□□□ -0.41
HOXD9-201ENST00000249499 C7orf65Q6ZTY9 151 aa12.48□□□□□ -0.41
HOXD9-201ENST00000249499 PSPHP1O15172 72 aa12.45□□□□□ -0.42
HOXD9-201ENST00000249499 LRP1Q07954 4544 aaKnown RBP12.44□□□□□ -0.42
HOXD9-201ENST00000249499 TNXBP22105 4242 aa12.4□□□□□ -0.42
HOXD9-201ENST00000249499 A8MUN3 132 aa12.4□□□□□ -0.42
HOXD9-201ENST00000249499 Q75L30 129 aa12.4□□□□□ -0.42
HOXD9-201ENST00000249499 PRO0628Q9UI54 55 aa12.4□□□□□ -0.42
HOXD9-201ENST00000249499 BRK1Q8WUW1 75 aa12.38□□□□□ -0.43
HOXD9-201ENST00000249499 FAT3Q8TDW7 4589 aa12.37□□□□□ -0.43
HOXD9-201ENST00000249499 PRR15LQ9BU68 103 aa12.36□□□□□ -0.43
HOXD9-201ENST00000249499 LINC01558Q9Y6Z2 57 aa12.36□□□□□ -0.43
HOXD9-201ENST00000249499 CHKB-CPT1BH3BT56 60 aa12.35□□□□□ -0.43
HOXD9-201ENST00000249499 Q5VV11 94 aa12.34□□□□□ -0.43
HOXD9-201ENST00000249499 MT1HL1P0DM35 61 aa12.28□□□□□ -0.44
HOXD9-201ENST00000249499 DMBT1Q9UGM3 2413 aaPredicted RBP12.23□□□□□ -0.45
HOXD9-201ENST00000249499 HERC1Q15751 4861 aa12.23□□□□□ -0.45
HOXD9-201ENST00000249499 SPINK7P58062 85 aa12.2□□□□□ -0.46
HOXD9-201ENST00000249499 RPL37P61927 97 aaKnown RBP12.16□□□□□ -0.46
HOXD9-201ENST00000249499 ATP11AUNQ6ZP68 121 aa12.16□□□□□ -0.46
HOXD9-201ENST00000249499 XP32Q5T750 250 aa12.11□□□□□ -0.47
HOXD9-201ENST00000249499 A6NED7 52 aa12.1□□□□□ -0.47
HOXD9-201ENST00000249499 J3QL48 77 aa12.08□□□□□ -0.48
HOXD9-201ENST00000249499 SPTSSBQ8NFR3 76 aa12.02□□□□□ -0.48
HOXD9-201ENST00000249499 A0A1B0GU69 56 aa12.02□□□□□ -0.49
HOXD9-201ENST00000249499 COX6B2Q6YFQ2 88 aa12□□□□□ -0.49
HOXD9-201ENST00000249499 KRTAP3-1Q9BYR8 98 aa12□□□□□ -0.49
HOXD9-201ENST00000249499 TPRXLQ17RH7 258 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms